| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is yxjM [H]
Identifier: 21240909
GI number: 21240909
Start: 158735
End: 159961
Strand: Direct
Name: yxjM [H]
Synonym: XAC0135
Alternate gene names: 21240909
Gene position: 158735-159961 (Clockwise)
Preceding gene: 21240908
Following gene: 21240910
Centisome position: 3.07
GC content: 68.38
Gene sequence:
>1227_bases GTGCCGGTGTGCGCACGCGCTGCAGCCGCGACAGGGGCCGCAGGTCATCGATCCCACCTGCCAGAAGTCACCTTCTGCCT GCGCACCATTGCCGAGCGCCTGCATGGCGGTCAGCATCGCCGCATGAACTCTTCCTTCTGCCACCTGTTGCACCCCCTGC GTCTGGCCGCTGCGTTCACCATTGCCGCGGTCGCGCTGTCGTTCATGCCCGATGCGTCTGCCCACGGCGCCTGGCGCTGG GGCGCACTGGCCGGCTTCACCGCATTGTTCGTGTTGCACACCGTGTTGCCGCAAACGCATGCATTGCGCACGGTGGCCAC CCTGCTGCAGGCGGTGTTGGCATTGCTGCTGGTCTGGATAGAGCCGCGTGCCGGCACCGCGCCGGTCCTGCTGGTGATGC TGGTGGCGCAGGCGGGCATGACCTGGCCGCCGTTGCGCGTGCTGCTGCTGGCGCTGGCGTTGAACGCTGGCATGTACGCG GTGCTGGTGCACGCAGGCTTCGATCGCGCCTTGTTGATCGTCAGCATCTATGCCGGCTTCCAGGCCTTTGCCGCACTCAC CGCGCATTACGCCCGCAGTGCCGAGCGGGCGCGCGACGCCTTGGCCTACGTCAACGCCGATCTGCTGGCCACCCGCGCGT TGCTGGCCGACAGTGCGCGCGATGCCGAGCGTTTGCGGCTGGCGCGCGAGTTGCACGATGTGGCCGGGCACAAGCTCACC GCCATGCGCATCAATCTGCGCCTGCTCAGCGCCGACCCGGCCCTGGCACAGCGCGACGAGGTAGCGGTGGTGGAACAGTT GTCGGCCGAACTGCTGTCGGACATCCGCAACGTGGTGCAATCGCTGCGCGACGACCAGGGCCTGGACCTGCAGACTGCCT TGCGTGCACTGGCCGCCCCGTTCCCGCGCCCGACGCTGCGCCTGCAGATCGATGCCGACGTGCGTGTCACCGATGCGCGC GTGGCCGAGCTGCTGCTGCGGCTGGTGCAGGAAGCGCTGACCAACGCCGTGCGGCATGCCGATGCCGATGAAGTGGCCGT GCACCTGCACTGCGAAGGCGCACAGCTGCACGTGGACATCTGCGACGATGGCCGCCGCGCCGAGCGCATCCGCGAAGGCA ACGGCATTACCGGCATGCGCGAACGCCTGGCCGCACTGCACGGCCAGCTGGACCTTGGCCGCACACCCACGGGCGGCATG CATCTGATCGCGAGACTACCGGTATGA
Upstream 100 bases:
>100_bases GCAAGCGGCCTCCGCTGCCGGCCGTCGCCGCCCCGCACCGGATTGAGCGCAGCCAGCAGAACGGAAGCGGACCGGGCATG ACCTGCGGCCCCGGGGTGGT
Downstream 100 bases:
>100_bases GTTCACGTCGTATTGCCCTGGCCGACGACCAGATCCTGGTGCGCGCCGGCCTGCGCGCGTTGCTGCAGCAGCAGGGCGTG GAGGTGGTGTGCGAGGCCGA
Product: two-component system sensor protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 408; Mature: 407
Protein sequence:
>408_residues MPVCARAAAATGAAGHRSHLPEVTFCLRTIAERLHGGQHRRMNSSFCHLLHPLRLAAAFTIAAVALSFMPDASAHGAWRW GALAGFTALFVLHTVLPQTHALRTVATLLQAVLALLLVWIEPRAGTAPVLLVMLVAQAGMTWPPLRVLLLALALNAGMYA VLVHAGFDRALLIVSIYAGFQAFAALTAHYARSAERARDALAYVNADLLATRALLADSARDAERLRLARELHDVAGHKLT AMRINLRLLSADPALAQRDEVAVVEQLSAELLSDIRNVVQSLRDDQGLDLQTALRALAAPFPRPTLRLQIDADVRVTDAR VAELLLRLVQEALTNAVRHADADEVAVHLHCEGAQLHVDICDDGRRAERIREGNGITGMRERLAALHGQLDLGRTPTGGM HLIARLPV
Sequences:
>Translated_408_residues MPVCARAAAATGAAGHRSHLPEVTFCLRTIAERLHGGQHRRMNSSFCHLLHPLRLAAAFTIAAVALSFMPDASAHGAWRW GALAGFTALFVLHTVLPQTHALRTVATLLQAVLALLLVWIEPRAGTAPVLLVMLVAQAGMTWPPLRVLLLALALNAGMYA VLVHAGFDRALLIVSIYAGFQAFAALTAHYARSAERARDALAYVNADLLATRALLADSARDAERLRLARELHDVAGHKLT AMRINLRLLSADPALAQRDEVAVVEQLSAELLSDIRNVVQSLRDDQGLDLQTALRALAAPFPRPTLRLQIDADVRVTDAR VAELLLRLVQEALTNAVRHADADEVAVHLHCEGAQLHVDICDDGRRAERIREGNGITGMRERLAALHGQLDLGRTPTGGM HLIARLPV >Mature_407_residues PVCARAAAATGAAGHRSHLPEVTFCLRTIAERLHGGQHRRMNSSFCHLLHPLRLAAAFTIAAVALSFMPDASAHGAWRWG ALAGFTALFVLHTVLPQTHALRTVATLLQAVLALLLVWIEPRAGTAPVLLVMLVAQAGMTWPPLRVLLLALALNAGMYAV LVHAGFDRALLIVSIYAGFQAFAALTAHYARSAERARDALAYVNADLLATRALLADSARDAERLRLARELHDVAGHKLTA MRINLRLLSADPALAQRDEVAVVEQLSAELLSDIRNVVQSLRDDQGLDLQTALRALAAPFPRPTLRLQIDADVRVTDARV AELLLRLVQEALTNAVRHADADEVAVHLHCEGAQLHVDICDDGRRAERIREGNGITGMRERLAALHGQLDLGRTPTGGMH LIARLPV
Specific function: Probable member of the two-component regulatory system yxjM/yxjL. May activate yxjL by phosphorylation [H]
COG id: COG4585
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI87082311, Length=190, Percent_Identity=33.1578947368421, Blast_Score=64, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011712 [H]
Pfam domain/function: PF02518 HATPase_c; PF07730 HisKA_3 [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 44150; Mature: 44019
Theoretical pI: Translated: 8.53; Mature: 8.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVCARAAAATGAAGHRSHLPEVTFCLRTIAERLHGGQHRRMNSSFCHLLHPLRLAAAFT CCCCHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH IAAVALSFMPDASAHGAWRWGALAGFTALFVLHTVLPQTHALRTVATLLQAVLALLLVWI HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC EPRAGTAPVLLVMLVAQAGMTWPPLRVLLLALALNAGMYAVLVHAGFDRALLIVSIYAGF CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHEECCCCHHHHHHHHHHHH QAFAALTAHYARSAERARDALAYVNADLLATRALLADSARDAERLRLARELHDVAGHKLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEE AMRINLRLLSADPALAQRDEVAVVEQLSAELLSDIRNVVQSLRDDQGLDLQTALRALAAP EEEEEEEEEECCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC FPRPTLRLQIDADVRVTDARVAELLLRLVQEALTNAVRHADADEVAVHLHCEGAQLHVDI CCCCCEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEE CDDGRRAERIREGNGITGMRERLAALHGQLDLGRTPTGGMHLIARLPV CCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC >Mature Secondary Structure PVCARAAAATGAAGHRSHLPEVTFCLRTIAERLHGGQHRRMNSSFCHLLHPLRLAAAFT CCCHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH IAAVALSFMPDASAHGAWRWGALAGFTALFVLHTVLPQTHALRTVATLLQAVLALLLVWI HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC EPRAGTAPVLLVMLVAQAGMTWPPLRVLLLALALNAGMYAVLVHAGFDRALLIVSIYAGF CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHEECCCCHHHHHHHHHHHH QAFAALTAHYARSAERARDALAYVNADLLATRALLADSARDAERLRLARELHDVAGHKLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEE AMRINLRLLSADPALAQRDEVAVVEQLSAELLSDIRNVVQSLRDDQGLDLQTALRALAAP EEEEEEEEEECCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC FPRPTLRLQIDADVRVTDARVAELLLRLVQEALTNAVRHADADEVAVHLHCEGAQLHVDI CCCCCEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEE CDDGRRAERIREGNGITGMRERLAALHGQLDLGRTPTGGMHLIARLPV CCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8978088; 8969509; 9384377 [H]