Definition Methanosarcina mazei Go1 chromosome, complete genome.
Accession NC_003901
Length 4,096,345

Click here to switch to the map view.

The map label for this gene is 21228717

Identifier: 21228717

GI number: 21228717

Start: 3116875

End: 3118887

Strand: Reverse

Name: 21228717

Synonym: MM_2615

Alternate gene names: NA

Gene position: 3118887-3116875 (Counterclockwise)

Preceding gene: 21228733

Following gene: 21228716

Centisome position: 76.14

GC content: 41.33

Gene sequence:

>2013_bases
TTGCTGATTGTTCCTTTTCTGTCACCTCAGACAAGTGCAAGAGATTACACCCTGGAAGAAGCGACAGCGAATATTACTAT
TTACCCGGAAGGCGCAGTTCACGTTGAAGAATCGGTTTCCTACACTTTTGATGGAGATTACAACTATGTTTACAGAATGA
TCAGGACATCAACAGAGGAATCCATTCGGAATATTAAGGGTTACTGTTCTGACGATGCATGCAAATTCAGAGTTGAAAGG
ATTTCTGAAGGATACAGGTTAATAGGCGATCTTCCGGAACATACTCCGGAAAATTTGACCTTTTATGTATCTTATGACCA
TTACGGAGCGGTCAAAGTCCACGATGACGTTTCCGAATTTCGCAGACAATGGGGCGAAGAATGGGAGAAGCCGCTTGGAA
ACCTGAAAGTAAACATTACCTTTCCGCTAAAAAACGACAGTGAAATCCTTTACTGGACTCACCCTGCCGGCTATACGCAG
GAAGAGAACTTAAATCATAATGTCCTCAATTTAAAGACAGAAGAGATCCCCTCTTCTTACGATTATAAAGTCAGAGTGGT
TTTTCCGAAAATAGAATCACCAGATTCCAGCTCTGTCCGGATAGATAACGAGAAAAATCTTGAAAAAATACTGGCTGAGG
AAAAAGAATATCGACAGAAAGAGTTGAAGTTAGAAGGGCTTTATGACATAACCCTTTACTTCCTGTTCTTCGTCCTTGTG
ATTCCTGTCTTTATATACCTGATATACGGGAGAGAACTGAAAACAGGTTTAGAAGAGAAAACAGGTTACGAAGGGGAAAC
AAACTCTGAGGAGAAAACAAACTCTGAGGGGAAAACAAACCCTGAAGAGAAAACAGATCACGAAATGGAAACAAACTCTG
AAGAGGGGGCAGGTCACGAAAAGGAAACAGGTCATGAAGACAGATCAGATCACGAAAGTAAAACAGATTACAAGAGGAAA
ATACGTTTAATAGAAATATATAAACGAAAGCCAGACGAGGATTTCAGACCTGCCGTTGTCAACGCTATTATGAAAGGGAG
ACTGGGAATCCCCACAATTGACGGATTTACTGCCACATTCATGGACCTTGCTAATCGTGGTTATATTTCTCTGAGGAATT
CAGGACCCGAAGAGGCAGACTCATCAAACATTTCAGGGTCAGAGCCAGAAGACTTCATGATAGAACTCAACCATGAAATG
TGTCCCGAAATTAAAGGAAAGTATTATGAAATTGAAGGAAAACATCCCGAAGTTAGAGGAAGCAAATCCGAACTGAAAGA
ATCCGAGCTGATAGACTTTGAAAAAGATATACTCAAGCTGTTAAATGATCACTCTTCCGAAAGAAAAGTCTCCTGGAGAG
AATTCAGAAAGGAGCTCGAAGGTACAGAGGAGTTTTATAAGTTTATAATGTCATGGGGGAAAAAAGTTCGGAAACATAGT
GAAATTGACAGGTTTTTCCAGTCAACAGGAAGTACATATATGAACCTGTTTTCCCGGGCTATTCTTGCATCTGCGATTGT
TTATTATATTGCGCTTTCAGGATATTTTCCTTCAAGCGAGTTTCCGGGAGTGTCAAAGGTTAATACGCTGACCGCTTTGA
TAGGGATCTGGGGATTTATTATGACAAAAAACTCAGAGATATTTGTAAAGGTATTCGGGCGCTGGACATCTGAAGGGAAG
CTCTACTATGAACTCTGGGGCAATTTTAGAGAATATATCACGGACCAGTCTGCTCTCAAAAATTGTCCTCCCGAATCCGT
GAAAATATGGGATTCGTATCTGGTGTATGCAGCTTCCCTGGGAGTTGCAAAGCAGGCTTTTAGAAATATGTCCCTTATTG
TTCCTTTTGAAAAGCTTGAAGAGAGCAGTTTCCGCCCTATAAGCTACCATTATTATGATCATTCCGTGCACGGATTTGAA
AATGCCTGTTCTTCACCCAATCAGGGCGTGGATGGAACAGAAAGAAGCAGTAAGAGCAGCAGTTTTAAGGAGAGGGGCGA
CGGGCCTGAATAA

Upstream 100 bases:

>100_bases
TCTATTGAGGCTCTCGAATGGTTCTTTTGAACCTGCCAGAGGATCAAATGTCGCCAGAGGATCAGGTGTCAATTCAATAG
CACTGAAAATATTTCTTCTT

Downstream 100 bases:

>100_bases
GTTACTTCAGTACCTTAATAAGTACTCTGTAATAGTACTCTGTAATAGTACTCTGTAATAATAGAGACCACTGTAAAACT
GAGAAAACAAATTGAAAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 670; Mature: 670

Protein sequence:

>670_residues
MLIVPFLSPQTSARDYTLEEATANITIYPEGAVHVEESVSYTFDGDYNYVYRMIRTSTEESIRNIKGYCSDDACKFRVER
ISEGYRLIGDLPEHTPENLTFYVSYDHYGAVKVHDDVSEFRRQWGEEWEKPLGNLKVNITFPLKNDSEILYWTHPAGYTQ
EENLNHNVLNLKTEEIPSSYDYKVRVVFPKIESPDSSSVRIDNEKNLEKILAEEKEYRQKELKLEGLYDITLYFLFFVLV
IPVFIYLIYGRELKTGLEEKTGYEGETNSEEKTNSEGKTNPEEKTDHEMETNSEEGAGHEKETGHEDRSDHESKTDYKRK
IRLIEIYKRKPDEDFRPAVVNAIMKGRLGIPTIDGFTATFMDLANRGYISLRNSGPEEADSSNISGSEPEDFMIELNHEM
CPEIKGKYYEIEGKHPEVRGSKSELKESELIDFEKDILKLLNDHSSERKVSWREFRKELEGTEEFYKFIMSWGKKVRKHS
EIDRFFQSTGSTYMNLFSRAILASAIVYYIALSGYFPSSEFPGVSKVNTLTALIGIWGFIMTKNSEIFVKVFGRWTSEGK
LYYELWGNFREYITDQSALKNCPPESVKIWDSYLVYAASLGVAKQAFRNMSLIVPFEKLEESSFRPISYHYYDHSVHGFE
NACSSPNQGVDGTERSSKSSSFKERGDGPE

Sequences:

>Translated_670_residues
MLIVPFLSPQTSARDYTLEEATANITIYPEGAVHVEESVSYTFDGDYNYVYRMIRTSTEESIRNIKGYCSDDACKFRVER
ISEGYRLIGDLPEHTPENLTFYVSYDHYGAVKVHDDVSEFRRQWGEEWEKPLGNLKVNITFPLKNDSEILYWTHPAGYTQ
EENLNHNVLNLKTEEIPSSYDYKVRVVFPKIESPDSSSVRIDNEKNLEKILAEEKEYRQKELKLEGLYDITLYFLFFVLV
IPVFIYLIYGRELKTGLEEKTGYEGETNSEEKTNSEGKTNPEEKTDHEMETNSEEGAGHEKETGHEDRSDHESKTDYKRK
IRLIEIYKRKPDEDFRPAVVNAIMKGRLGIPTIDGFTATFMDLANRGYISLRNSGPEEADSSNISGSEPEDFMIELNHEM
CPEIKGKYYEIEGKHPEVRGSKSELKESELIDFEKDILKLLNDHSSERKVSWREFRKELEGTEEFYKFIMSWGKKVRKHS
EIDRFFQSTGSTYMNLFSRAILASAIVYYIALSGYFPSSEFPGVSKVNTLTALIGIWGFIMTKNSEIFVKVFGRWTSEGK
LYYELWGNFREYITDQSALKNCPPESVKIWDSYLVYAASLGVAKQAFRNMSLIVPFEKLEESSFRPISYHYYDHSVHGFE
NACSSPNQGVDGTERSSKSSSFKERGDGPE
>Mature_670_residues
MLIVPFLSPQTSARDYTLEEATANITIYPEGAVHVEESVSYTFDGDYNYVYRMIRTSTEESIRNIKGYCSDDACKFRVER
ISEGYRLIGDLPEHTPENLTFYVSYDHYGAVKVHDDVSEFRRQWGEEWEKPLGNLKVNITFPLKNDSEILYWTHPAGYTQ
EENLNHNVLNLKTEEIPSSYDYKVRVVFPKIESPDSSSVRIDNEKNLEKILAEEKEYRQKELKLEGLYDITLYFLFFVLV
IPVFIYLIYGRELKTGLEEKTGYEGETNSEEKTNSEGKTNPEEKTDHEMETNSEEGAGHEKETGHEDRSDHESKTDYKRK
IRLIEIYKRKPDEDFRPAVVNAIMKGRLGIPTIDGFTATFMDLANRGYISLRNSGPEEADSSNISGSEPEDFMIELNHEM
CPEIKGKYYEIEGKHPEVRGSKSELKESELIDFEKDILKLLNDHSSERKVSWREFRKELEGTEEFYKFIMSWGKKVRKHS
EIDRFFQSTGSTYMNLFSRAILASAIVYYIALSGYFPSSEFPGVSKVNTLTALIGIWGFIMTKNSEIFVKVFGRWTSEGK
LYYELWGNFREYITDQSALKNCPPESVKIWDSYLVYAASLGVAKQAFRNMSLIVPFEKLEESSFRPISYHYYDHSVHGFE
NACSSPNQGVDGTERSSKSSSFKERGDGPE

Specific function: Unknown

COG id: COG4907

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 77398; Mature: 77398

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS00018 EF_HAND_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIVPFLSPQTSARDYTLEEATANITIYPEGAVHVEESVSYTFDGDYNYVYRMIRTSTEE
CEEECCCCCCCCCCCEEEHHCCEEEEEECCCCEEEECCCEEEECCCHHHHHHHHHHHHHH
SIRNIKGYCSDDACKFRVERISEGYRLIGDLPEHTPENLTFYVSYDHYGAVKVHDDVSEF
HHHHHCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCEEEEEEECCCCEEEECCCHHHH
RRQWGEEWEKPLGNLKVNITFPLKNDSEILYWTHPAGYTQEENLNHNVLNLKTEEIPSSY
HHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHCCCCC
DYKVRVVFPKIESPDSSSVRIDNEKNLEKILAEEKEYRQKELKLEGLYDITLYFLFFVLV
CEEEEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
IPVFIYLIYGRELKTGLEEKTGYEGETNSEEKTNSEGKTNPEEKTDHEMETNSEEGAGHE
HHHHHHHHHCHHHHHCHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCHHCCCCCCCCCCC
KETGHEDRSDHESKTDYKRKIRLIEIYKRKPDEDFRPAVVNAIMKGRLGIPTIDGFTATF
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHH
MDLANRGYISLRNSGPEEADSSNISGSEPEDFMIELNHEMCPEIKGKYYEIEGKHPEVRG
HHHHCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECHHHCCCCCCCEEEECCCCCCCCC
SKSELKESELIDFEKDILKLLNDHSSERKVSWREFRKELEGTEEFYKFIMSWGKKVRKHS
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
EIDRFFQSTGSTYMNLFSRAILASAIVYYIALSGYFPSSEFPGVSKVNTLTALIGIWGFI
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
MTKNSEIFVKVFGRWTSEGKLYYELWGNFREYITDQSALKNCPPESVKIWDSYLVYAASL
HCCCCEEEEEEEECCCCCCEEEEHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHH
GVAKQAFRNMSLIVPFEKLEESSFRPISYHYYDHSVHGFENACSSPNQGVDGTERSSKSS
HHHHHHHCCCEEEEEHHHHCCCCCCCEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCC
SFKERGDGPE
CHHHCCCCCC
>Mature Secondary Structure
MLIVPFLSPQTSARDYTLEEATANITIYPEGAVHVEESVSYTFDGDYNYVYRMIRTSTEE
CEEECCCCCCCCCCCEEEHHCCEEEEEECCCCEEEECCCEEEECCCHHHHHHHHHHHHHH
SIRNIKGYCSDDACKFRVERISEGYRLIGDLPEHTPENLTFYVSYDHYGAVKVHDDVSEF
HHHHHCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCEEEEEEECCCCEEEECCCHHHH
RRQWGEEWEKPLGNLKVNITFPLKNDSEILYWTHPAGYTQEENLNHNVLNLKTEEIPSSY
HHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHCCCCC
DYKVRVVFPKIESPDSSSVRIDNEKNLEKILAEEKEYRQKELKLEGLYDITLYFLFFVLV
CEEEEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
IPVFIYLIYGRELKTGLEEKTGYEGETNSEEKTNSEGKTNPEEKTDHEMETNSEEGAGHE
HHHHHHHHHCHHHHHCHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCHHCCCCCCCCCCC
KETGHEDRSDHESKTDYKRKIRLIEIYKRKPDEDFRPAVVNAIMKGRLGIPTIDGFTATF
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHH
MDLANRGYISLRNSGPEEADSSNISGSEPEDFMIELNHEMCPEIKGKYYEIEGKHPEVRG
HHHHCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECHHHCCCCCCCEEEECCCCCCCCC
SKSELKESELIDFEKDILKLLNDHSSERKVSWREFRKELEGTEEFYKFIMSWGKKVRKHS
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
EIDRFFQSTGSTYMNLFSRAILASAIVYYIALSGYFPSSEFPGVSKVNTLTALIGIWGFI
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
MTKNSEIFVKVFGRWTSEGKLYYELWGNFREYITDQSALKNCPPESVKIWDSYLVYAASL
HCCCCEEEEEEEECCCCCCEEEEHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHH
GVAKQAFRNMSLIVPFEKLEESSFRPISYHYYDHSVHGFENACSSPNQGVDGTERSSKSS
HHHHHHHCCCEEEEEHHHHCCCCCCCEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCC
SFKERGDGPE
CHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA