| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228717
Identifier: 21228717
GI number: 21228717
Start: 3116875
End: 3118887
Strand: Reverse
Name: 21228717
Synonym: MM_2615
Alternate gene names: NA
Gene position: 3118887-3116875 (Counterclockwise)
Preceding gene: 21228733
Following gene: 21228716
Centisome position: 76.14
GC content: 41.33
Gene sequence:
>2013_bases TTGCTGATTGTTCCTTTTCTGTCACCTCAGACAAGTGCAAGAGATTACACCCTGGAAGAAGCGACAGCGAATATTACTAT TTACCCGGAAGGCGCAGTTCACGTTGAAGAATCGGTTTCCTACACTTTTGATGGAGATTACAACTATGTTTACAGAATGA TCAGGACATCAACAGAGGAATCCATTCGGAATATTAAGGGTTACTGTTCTGACGATGCATGCAAATTCAGAGTTGAAAGG ATTTCTGAAGGATACAGGTTAATAGGCGATCTTCCGGAACATACTCCGGAAAATTTGACCTTTTATGTATCTTATGACCA TTACGGAGCGGTCAAAGTCCACGATGACGTTTCCGAATTTCGCAGACAATGGGGCGAAGAATGGGAGAAGCCGCTTGGAA ACCTGAAAGTAAACATTACCTTTCCGCTAAAAAACGACAGTGAAATCCTTTACTGGACTCACCCTGCCGGCTATACGCAG GAAGAGAACTTAAATCATAATGTCCTCAATTTAAAGACAGAAGAGATCCCCTCTTCTTACGATTATAAAGTCAGAGTGGT TTTTCCGAAAATAGAATCACCAGATTCCAGCTCTGTCCGGATAGATAACGAGAAAAATCTTGAAAAAATACTGGCTGAGG AAAAAGAATATCGACAGAAAGAGTTGAAGTTAGAAGGGCTTTATGACATAACCCTTTACTTCCTGTTCTTCGTCCTTGTG ATTCCTGTCTTTATATACCTGATATACGGGAGAGAACTGAAAACAGGTTTAGAAGAGAAAACAGGTTACGAAGGGGAAAC AAACTCTGAGGAGAAAACAAACTCTGAGGGGAAAACAAACCCTGAAGAGAAAACAGATCACGAAATGGAAACAAACTCTG AAGAGGGGGCAGGTCACGAAAAGGAAACAGGTCATGAAGACAGATCAGATCACGAAAGTAAAACAGATTACAAGAGGAAA ATACGTTTAATAGAAATATATAAACGAAAGCCAGACGAGGATTTCAGACCTGCCGTTGTCAACGCTATTATGAAAGGGAG ACTGGGAATCCCCACAATTGACGGATTTACTGCCACATTCATGGACCTTGCTAATCGTGGTTATATTTCTCTGAGGAATT CAGGACCCGAAGAGGCAGACTCATCAAACATTTCAGGGTCAGAGCCAGAAGACTTCATGATAGAACTCAACCATGAAATG TGTCCCGAAATTAAAGGAAAGTATTATGAAATTGAAGGAAAACATCCCGAAGTTAGAGGAAGCAAATCCGAACTGAAAGA ATCCGAGCTGATAGACTTTGAAAAAGATATACTCAAGCTGTTAAATGATCACTCTTCCGAAAGAAAAGTCTCCTGGAGAG AATTCAGAAAGGAGCTCGAAGGTACAGAGGAGTTTTATAAGTTTATAATGTCATGGGGGAAAAAAGTTCGGAAACATAGT GAAATTGACAGGTTTTTCCAGTCAACAGGAAGTACATATATGAACCTGTTTTCCCGGGCTATTCTTGCATCTGCGATTGT TTATTATATTGCGCTTTCAGGATATTTTCCTTCAAGCGAGTTTCCGGGAGTGTCAAAGGTTAATACGCTGACCGCTTTGA TAGGGATCTGGGGATTTATTATGACAAAAAACTCAGAGATATTTGTAAAGGTATTCGGGCGCTGGACATCTGAAGGGAAG CTCTACTATGAACTCTGGGGCAATTTTAGAGAATATATCACGGACCAGTCTGCTCTCAAAAATTGTCCTCCCGAATCCGT GAAAATATGGGATTCGTATCTGGTGTATGCAGCTTCCCTGGGAGTTGCAAAGCAGGCTTTTAGAAATATGTCCCTTATTG TTCCTTTTGAAAAGCTTGAAGAGAGCAGTTTCCGCCCTATAAGCTACCATTATTATGATCATTCCGTGCACGGATTTGAA AATGCCTGTTCTTCACCCAATCAGGGCGTGGATGGAACAGAAAGAAGCAGTAAGAGCAGCAGTTTTAAGGAGAGGGGCGA CGGGCCTGAATAA
Upstream 100 bases:
>100_bases TCTATTGAGGCTCTCGAATGGTTCTTTTGAACCTGCCAGAGGATCAAATGTCGCCAGAGGATCAGGTGTCAATTCAATAG CACTGAAAATATTTCTTCTT
Downstream 100 bases:
>100_bases GTTACTTCAGTACCTTAATAAGTACTCTGTAATAGTACTCTGTAATAGTACTCTGTAATAATAGAGACCACTGTAAAACT GAGAAAACAAATTGAAAGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 670; Mature: 670
Protein sequence:
>670_residues MLIVPFLSPQTSARDYTLEEATANITIYPEGAVHVEESVSYTFDGDYNYVYRMIRTSTEESIRNIKGYCSDDACKFRVER ISEGYRLIGDLPEHTPENLTFYVSYDHYGAVKVHDDVSEFRRQWGEEWEKPLGNLKVNITFPLKNDSEILYWTHPAGYTQ EENLNHNVLNLKTEEIPSSYDYKVRVVFPKIESPDSSSVRIDNEKNLEKILAEEKEYRQKELKLEGLYDITLYFLFFVLV IPVFIYLIYGRELKTGLEEKTGYEGETNSEEKTNSEGKTNPEEKTDHEMETNSEEGAGHEKETGHEDRSDHESKTDYKRK IRLIEIYKRKPDEDFRPAVVNAIMKGRLGIPTIDGFTATFMDLANRGYISLRNSGPEEADSSNISGSEPEDFMIELNHEM CPEIKGKYYEIEGKHPEVRGSKSELKESELIDFEKDILKLLNDHSSERKVSWREFRKELEGTEEFYKFIMSWGKKVRKHS EIDRFFQSTGSTYMNLFSRAILASAIVYYIALSGYFPSSEFPGVSKVNTLTALIGIWGFIMTKNSEIFVKVFGRWTSEGK LYYELWGNFREYITDQSALKNCPPESVKIWDSYLVYAASLGVAKQAFRNMSLIVPFEKLEESSFRPISYHYYDHSVHGFE NACSSPNQGVDGTERSSKSSSFKERGDGPE
Sequences:
>Translated_670_residues MLIVPFLSPQTSARDYTLEEATANITIYPEGAVHVEESVSYTFDGDYNYVYRMIRTSTEESIRNIKGYCSDDACKFRVER ISEGYRLIGDLPEHTPENLTFYVSYDHYGAVKVHDDVSEFRRQWGEEWEKPLGNLKVNITFPLKNDSEILYWTHPAGYTQ EENLNHNVLNLKTEEIPSSYDYKVRVVFPKIESPDSSSVRIDNEKNLEKILAEEKEYRQKELKLEGLYDITLYFLFFVLV IPVFIYLIYGRELKTGLEEKTGYEGETNSEEKTNSEGKTNPEEKTDHEMETNSEEGAGHEKETGHEDRSDHESKTDYKRK IRLIEIYKRKPDEDFRPAVVNAIMKGRLGIPTIDGFTATFMDLANRGYISLRNSGPEEADSSNISGSEPEDFMIELNHEM CPEIKGKYYEIEGKHPEVRGSKSELKESELIDFEKDILKLLNDHSSERKVSWREFRKELEGTEEFYKFIMSWGKKVRKHS EIDRFFQSTGSTYMNLFSRAILASAIVYYIALSGYFPSSEFPGVSKVNTLTALIGIWGFIMTKNSEIFVKVFGRWTSEGK LYYELWGNFREYITDQSALKNCPPESVKIWDSYLVYAASLGVAKQAFRNMSLIVPFEKLEESSFRPISYHYYDHSVHGFE NACSSPNQGVDGTERSSKSSSFKERGDGPE >Mature_670_residues MLIVPFLSPQTSARDYTLEEATANITIYPEGAVHVEESVSYTFDGDYNYVYRMIRTSTEESIRNIKGYCSDDACKFRVER ISEGYRLIGDLPEHTPENLTFYVSYDHYGAVKVHDDVSEFRRQWGEEWEKPLGNLKVNITFPLKNDSEILYWTHPAGYTQ EENLNHNVLNLKTEEIPSSYDYKVRVVFPKIESPDSSSVRIDNEKNLEKILAEEKEYRQKELKLEGLYDITLYFLFFVLV IPVFIYLIYGRELKTGLEEKTGYEGETNSEEKTNSEGKTNPEEKTDHEMETNSEEGAGHEKETGHEDRSDHESKTDYKRK IRLIEIYKRKPDEDFRPAVVNAIMKGRLGIPTIDGFTATFMDLANRGYISLRNSGPEEADSSNISGSEPEDFMIELNHEM CPEIKGKYYEIEGKHPEVRGSKSELKESELIDFEKDILKLLNDHSSERKVSWREFRKELEGTEEFYKFIMSWGKKVRKHS EIDRFFQSTGSTYMNLFSRAILASAIVYYIALSGYFPSSEFPGVSKVNTLTALIGIWGFIMTKNSEIFVKVFGRWTSEGK LYYELWGNFREYITDQSALKNCPPESVKIWDSYLVYAASLGVAKQAFRNMSLIVPFEKLEESSFRPISYHYYDHSVHGFE NACSSPNQGVDGTERSSKSSSFKERGDGPE
Specific function: Unknown
COG id: COG4907
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 77398; Mature: 77398
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: PS00018 EF_HAND_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLIVPFLSPQTSARDYTLEEATANITIYPEGAVHVEESVSYTFDGDYNYVYRMIRTSTEE CEEECCCCCCCCCCCEEEHHCCEEEEEECCCCEEEECCCEEEECCCHHHHHHHHHHHHHH SIRNIKGYCSDDACKFRVERISEGYRLIGDLPEHTPENLTFYVSYDHYGAVKVHDDVSEF HHHHHCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCEEEEEEECCCCEEEECCCHHHH RRQWGEEWEKPLGNLKVNITFPLKNDSEILYWTHPAGYTQEENLNHNVLNLKTEEIPSSY HHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHCCCCC DYKVRVVFPKIESPDSSSVRIDNEKNLEKILAEEKEYRQKELKLEGLYDITLYFLFFVLV CEEEEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH IPVFIYLIYGRELKTGLEEKTGYEGETNSEEKTNSEGKTNPEEKTDHEMETNSEEGAGHE HHHHHHHHHCHHHHHCHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCHHCCCCCCCCCCC KETGHEDRSDHESKTDYKRKIRLIEIYKRKPDEDFRPAVVNAIMKGRLGIPTIDGFTATF CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHH MDLANRGYISLRNSGPEEADSSNISGSEPEDFMIELNHEMCPEIKGKYYEIEGKHPEVRG HHHHCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECHHHCCCCCCCEEEECCCCCCCCC SKSELKESELIDFEKDILKLLNDHSSERKVSWREFRKELEGTEEFYKFIMSWGKKVRKHS CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH EIDRFFQSTGSTYMNLFSRAILASAIVYYIALSGYFPSSEFPGVSKVNTLTALIGIWGFI HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH MTKNSEIFVKVFGRWTSEGKLYYELWGNFREYITDQSALKNCPPESVKIWDSYLVYAASL HCCCCEEEEEEEECCCCCCEEEEHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHH GVAKQAFRNMSLIVPFEKLEESSFRPISYHYYDHSVHGFENACSSPNQGVDGTERSSKSS HHHHHHHCCCEEEEEHHHHCCCCCCCEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCC SFKERGDGPE CHHHCCCCCC >Mature Secondary Structure MLIVPFLSPQTSARDYTLEEATANITIYPEGAVHVEESVSYTFDGDYNYVYRMIRTSTEE CEEECCCCCCCCCCCEEEHHCCEEEEEECCCCEEEECCCEEEECCCHHHHHHHHHHHHHH SIRNIKGYCSDDACKFRVERISEGYRLIGDLPEHTPENLTFYVSYDHYGAVKVHDDVSEF HHHHHCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCEEEEEEECCCCEEEECCCHHHH RRQWGEEWEKPLGNLKVNITFPLKNDSEILYWTHPAGYTQEENLNHNVLNLKTEEIPSSY HHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHCCCCC DYKVRVVFPKIESPDSSSVRIDNEKNLEKILAEEKEYRQKELKLEGLYDITLYFLFFVLV CEEEEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH IPVFIYLIYGRELKTGLEEKTGYEGETNSEEKTNSEGKTNPEEKTDHEMETNSEEGAGHE HHHHHHHHHCHHHHHCHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCHHCCCCCCCCCCC KETGHEDRSDHESKTDYKRKIRLIEIYKRKPDEDFRPAVVNAIMKGRLGIPTIDGFTATF CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHH MDLANRGYISLRNSGPEEADSSNISGSEPEDFMIELNHEMCPEIKGKYYEIEGKHPEVRG HHHHCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECHHHCCCCCCCEEEECCCCCCCCC SKSELKESELIDFEKDILKLLNDHSSERKVSWREFRKELEGTEEFYKFIMSWGKKVRKHS CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH EIDRFFQSTGSTYMNLFSRAILASAIVYYIALSGYFPSSEFPGVSKVNTLTALIGIWGFI HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH MTKNSEIFVKVFGRWTSEGKLYYELWGNFREYITDQSALKNCPPESVKIWDSYLVYAASL HCCCCEEEEEEEECCCCCCEEEEHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHH GVAKQAFRNMSLIVPFEKLEESSFRPISYHYYDHSVHGFENACSSPNQGVDGTERSSKSS HHHHHHHCCCEEEEEHHHHCCCCCCCEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCC SFKERGDGPE CHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA