| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228716
Identifier: 21228716
GI number: 21228716
Start: 3114765
End: 3116618
Strand: Reverse
Name: 21228716
Synonym: MM_2614
Alternate gene names: NA
Gene position: 3116618-3114765 (Counterclockwise)
Preceding gene: 21228717
Following gene: 21228715
Centisome position: 76.08
GC content: 44.01
Gene sequence:
>1854_bases TTGAGATTTTCGAAAGGCTCTGCTGAACCTGTCAGAGAAGTAAATACTAATTCTGCGGTCTTAAAAATAGCTATAACAAC TGTTATTCTGCTTGTCTTTCTCTGTCTGGTGCCTTCAGCCAGTGCTAGAGACTATGCTCTGGAAGAAGCAGGAACGAATA TAACTATAGATTCCAGAGGCCTGGTCCATGTTGAAGAATCGATTTCATACGCATTTGACGGAGATTACAGTGAAGTATTT AGAATCCTGGAAGTGCCGTCCGGGGAATCAATCCAGAATATTACAGGACATTGTTCAGATGAGGCTTGCAGGTTCAGAGT AGAAGAGACTTCCAGAGGCTATGAGCTGATAGGCGAACTTCCTTCCCCCACTCCACAAAAAGTGACTTTTTTTATTTCTT ATGACCATTACGGCGCAGTCAAGGTCCACAGCGATATTTCGGAATTCCATTATAAGCTCTGGGGTGAAGAATGGGAAAAG CCCCTCGGAAACCTGAGAGGAAACATTACGCTCCCTGTGGAAAGCGAGAATGAGCTTCAGTACTGGATCCATCCGACCGG CTATACCCGGAATATCGATGTGGAAAAAAATGTGGTAAATTTAAGGACAAAAGAAATTCCTTCATATCAATGGTATGAAA TCAGGGTTGTTTTTCCAAGGATAGAGTCTCCCGATTCCAGCTTTGTCAAGATAGACGATGCAGAGGGCCTTGAAGAAATT CTTGCTATTGAAAATGAATATCAGCAAAAAGGCTCGATTTTAAAAGGCCTTTACGGGCTGATAATTTTATCCACTCTCAT TGCCCTTGCACTGCCACTTTTCATTTATTTGAGGTACGGGAGAGAACCGGAAATTGGTTACGAAGCAATATATGAAAGAG AGCCGCCTACGGCATCCAGACCAGCAGTTGTCAATGCCATTATGCGGGGAAAAATAGGCACCCCCACGATGGACGGGTTT ACTGCTACGGTAATGAACCTTGCTAACCTTGGTTACATTTCTCTCAGGACTGTAAAATCTGAAGAACGAAGGGCACTGAG CCTTTTCAAATCCGAGGATGAAGACATTTTAATTGAAATTGCCAGCCCGGTGTCGTATTCAGGAGCTAGGGGAGACCTCC CGAAACTGGAAGACTTCGAGAAAGACGTGCTCAACTTATTGAAAAAACATTCTTCAGGAAACAAAATTTCATGGGCCAGG TTGAAAAAAGAACTTGGAAAAGGAACCGGCTTCTATGAATTTATCACTGCATGGAATAAGAAGGTTGAAAAGCATGTCGT GATTGAGAAACTCTTCCGGTCAACAGGAAATAAATACATGGTTATTTTCAGCATTGCAATTCTGATCGTAGCAATTGCTT ATTTTATCATACTATCCAATTATTTCCCTTCAGATGCATTTCCCCTTGCATCCAGTGCCAATTTGCTGGTGGCTTTTATA ACAGTCTTTTCAGTAATCATGATAATTTTCTCCAGCGCGTTTGAAAAAGTCCTCGGGCGCTGGACTCCTGAAGGAAGGCT CTATTATAAAAAATGGGCTAACTTCAAAAAATACCTCACAGATTTTTCCGCGCTCAAGGAACATCCCCCGGAATCAATCG AACTCTGGGACTCATATCTTGTTTATGCAACCGCCCTTGGAGTCGCAGAAGAAGTCCTTAAAAATATGTCCTTAGTCGTT CCTGCTGAACAGCTTAAAGCAAGCCACTTTTACTATGTGCACCACAGCTATGGCCAGTTCGGTTCCGGGTTTGGGAATGC TTACACATCATCTGCCCCATCTTCGAGCGGAAGCGGAGGCGGAGTGGGCGGTGTTGGAGGCGGCTCGGGCGGTGGAGGAG GAGGAGCCCGATAA
Upstream 100 bases:
>100_bases GTCTCTTTTGGTCTCTTTTTTATTTTCGTTCTGTTTATTTACATAAAACTCCAATAAAATATTAATATCCAAAAGATAAT ATAGAGTTGGAGGATTCCGG
Downstream 100 bases:
>100_bases AATACTTTTGAAGAAAACCGTGGTCAAAGTAACTGAAGAAAGAAGGAAAACGTGACAGGAGAAACAGTGATGGAAGGAAG CAGTTAACGAAGGAGAAGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 617; Mature: 617
Protein sequence:
>617_residues MRFSKGSAEPVREVNTNSAVLKIAITTVILLVFLCLVPSASARDYALEEAGTNITIDSRGLVHVEESISYAFDGDYSEVF RILEVPSGESIQNITGHCSDEACRFRVEETSRGYELIGELPSPTPQKVTFFISYDHYGAVKVHSDISEFHYKLWGEEWEK PLGNLRGNITLPVESENELQYWIHPTGYTRNIDVEKNVVNLRTKEIPSYQWYEIRVVFPRIESPDSSFVKIDDAEGLEEI LAIENEYQQKGSILKGLYGLIILSTLIALALPLFIYLRYGREPEIGYEAIYEREPPTASRPAVVNAIMRGKIGTPTMDGF TATVMNLANLGYISLRTVKSEERRALSLFKSEDEDILIEIASPVSYSGARGDLPKLEDFEKDVLNLLKKHSSGNKISWAR LKKELGKGTGFYEFITAWNKKVEKHVVIEKLFRSTGNKYMVIFSIAILIVAIAYFIILSNYFPSDAFPLASSANLLVAFI TVFSVIMIIFSSAFEKVLGRWTPEGRLYYKKWANFKKYLTDFSALKEHPPESIELWDSYLVYATALGVAEEVLKNMSLVV PAEQLKASHFYYVHHSYGQFGSGFGNAYTSSAPSSSGSGGGVGGVGGGSGGGGGGAR
Sequences:
>Translated_617_residues MRFSKGSAEPVREVNTNSAVLKIAITTVILLVFLCLVPSASARDYALEEAGTNITIDSRGLVHVEESISYAFDGDYSEVF RILEVPSGESIQNITGHCSDEACRFRVEETSRGYELIGELPSPTPQKVTFFISYDHYGAVKVHSDISEFHYKLWGEEWEK PLGNLRGNITLPVESENELQYWIHPTGYTRNIDVEKNVVNLRTKEIPSYQWYEIRVVFPRIESPDSSFVKIDDAEGLEEI LAIENEYQQKGSILKGLYGLIILSTLIALALPLFIYLRYGREPEIGYEAIYEREPPTASRPAVVNAIMRGKIGTPTMDGF TATVMNLANLGYISLRTVKSEERRALSLFKSEDEDILIEIASPVSYSGARGDLPKLEDFEKDVLNLLKKHSSGNKISWAR LKKELGKGTGFYEFITAWNKKVEKHVVIEKLFRSTGNKYMVIFSIAILIVAIAYFIILSNYFPSDAFPLASSANLLVAFI TVFSVIMIIFSSAFEKVLGRWTPEGRLYYKKWANFKKYLTDFSALKEHPPESIELWDSYLVYATALGVAEEVLKNMSLVV PAEQLKASHFYYVHHSYGQFGSGFGNAYTSSAPSSSGSGGGVGGVGGGSGGGGGGAR >Mature_617_residues MRFSKGSAEPVREVNTNSAVLKIAITTVILLVFLCLVPSASARDYALEEAGTNITIDSRGLVHVEESISYAFDGDYSEVF RILEVPSGESIQNITGHCSDEACRFRVEETSRGYELIGELPSPTPQKVTFFISYDHYGAVKVHSDISEFHYKLWGEEWEK PLGNLRGNITLPVESENELQYWIHPTGYTRNIDVEKNVVNLRTKEIPSYQWYEIRVVFPRIESPDSSFVKIDDAEGLEEI LAIENEYQQKGSILKGLYGLIILSTLIALALPLFIYLRYGREPEIGYEAIYEREPPTASRPAVVNAIMRGKIGTPTMDGF TATVMNLANLGYISLRTVKSEERRALSLFKSEDEDILIEIASPVSYSGARGDLPKLEDFEKDVLNLLKKHSSGNKISWAR LKKELGKGTGFYEFITAWNKKVEKHVVIEKLFRSTGNKYMVIFSIAILIVAIAYFIILSNYFPSDAFPLASSANLLVAFI TVFSVIMIIFSSAFEKVLGRWTPEGRLYYKKWANFKKYLTDFSALKEHPPESIELWDSYLVYATALGVAEEVLKNMSLVV PAEQLKASHFYYVHHSYGQFGSGFGNAYTSSAPSSSGSGGGVGGVGGGSGGGGGGAR
Specific function: Unknown
COG id: COG4907
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018702 [H]
Pfam domain/function: PF09972 DUF2207 [H]
EC number: NA
Molecular weight: Translated: 68602; Mature: 68602
Theoretical pI: Translated: 5.70; Mature: 5.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFSKGSAEPVREVNTNSAVLKIAITTVILLVFLCLVPSASARDYALEEAGTNITIDSRG CCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEECCCC LVHVEESISYAFDGDYSEVFRILEVPSGESIQNITGHCSDEACRFRVEETSRGYELIGEL CEEECCCCCEECCCCHHHHHHHHCCCCCCCHHHCCCCCCCHHHEEEEHHCCCCHHHHCCC PSPTPQKVTFFISYDHYGAVKVHSDISEFHYKLWGEEWEKPLGNLRGNITLPVESENELQ CCCCCCEEEEEEEECCCCEEEECCCHHHHHHHHCCHHHHHHHHCCCCCEEEEECCCCCEE YWIHPTGYTRNIDVEKNVVNLRTKEIPSYQWYEIRVVFPRIESPDSSFVKIDDAEGLEEI EEECCCCCEECCCCCCCCEEEEHHCCCCCEEEEEEEEEECCCCCCCCEEEEECCCCHHHH LAIENEYQQKGSILKGLYGLIILSTLIALALPLFIYLRYGREPEIGYEAIYEREPPTASR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCC PAVVNAIMRGKIGTPTMDGFTATVMNLANLGYISLRTVKSEERRALSLFKSEDEDILIEI CHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCCEEEEE ASPVSYSGARGDLPKLEDFEKDVLNLLKKHSSGNKISWARLKKELGKGTGFYEFITAWNK ECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHH KVEKHVVIEKLFRSTGNKYMVIFSIAILIVAIAYFIILSNYFPSDAFPLASSANLLVAFI HHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH TVFSVIMIIFSSAFEKVLGRWTPEGRLYYKKWANFKKYLTDFSALKEHPPESIELWDSYL HHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH VYATALGVAEEVLKNMSLVVPAEQLKASHFYYVHHSYGQFGSGFGNAYTSSAPSSSGSGG HHHHHHHHHHHHHHCCEEEECHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC GVGGVGGGSGGGGGGAR CCCCCCCCCCCCCCCCC >Mature Secondary Structure MRFSKGSAEPVREVNTNSAVLKIAITTVILLVFLCLVPSASARDYALEEAGTNITIDSRG CCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEECCCC LVHVEESISYAFDGDYSEVFRILEVPSGESIQNITGHCSDEACRFRVEETSRGYELIGEL CEEECCCCCEECCCCHHHHHHHHCCCCCCCHHHCCCCCCCHHHEEEEHHCCCCHHHHCCC PSPTPQKVTFFISYDHYGAVKVHSDISEFHYKLWGEEWEKPLGNLRGNITLPVESENELQ CCCCCCEEEEEEEECCCCEEEECCCHHHHHHHHCCHHHHHHHHCCCCCEEEEECCCCCEE YWIHPTGYTRNIDVEKNVVNLRTKEIPSYQWYEIRVVFPRIESPDSSFVKIDDAEGLEEI EEECCCCCEECCCCCCCCEEEEHHCCCCCEEEEEEEEEECCCCCCCCEEEEECCCCHHHH LAIENEYQQKGSILKGLYGLIILSTLIALALPLFIYLRYGREPEIGYEAIYEREPPTASR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCC PAVVNAIMRGKIGTPTMDGFTATVMNLANLGYISLRTVKSEERRALSLFKSEDEDILIEI CHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCCEEEEE ASPVSYSGARGDLPKLEDFEKDVLNLLKKHSSGNKISWARLKKELGKGTGFYEFITAWNK ECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHH KVEKHVVIEKLFRSTGNKYMVIFSIAILIVAIAYFIILSNYFPSDAFPLASSANLLVAFI HHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH TVFSVIMIIFSSAFEKVLGRWTPEGRLYYKKWANFKKYLTDFSALKEHPPESIELWDSYL HHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH VYATALGVAEEVLKNMSLVVPAEQLKASHFYYVHHSYGQFGSGFGNAYTSSAPSSSGSGG HHHHHHHHHHHHHHCCEEEECHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC GVGGVGGGSGGGGGGAR CCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]