| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228684
Identifier: 21228684
GI number: 21228684
Start: 3071434
End: 3071946
Strand: Reverse
Name: 21228684
Synonym: MM_2582
Alternate gene names: NA
Gene position: 3071946-3071434 (Counterclockwise)
Preceding gene: 21228685
Following gene: 21228682
Centisome position: 74.99
GC content: 48.15
Gene sequence:
>513_bases ATGATAAGTGAAGTTGACATGGACGACAATTTTCTTGGCCTGCGAGCCAGAGATGAGTTTTACTCGGGAAAACACATCCA CAGGGCTTCCCAGCTCATTCTCCTTGACCCTGAAAACAGGATTCTCCTGCAGAAAAGGTCGCCAGGAAAATTCTGGTTCC CAAACCGCTATACATACTCTGTCAGCGGTACTGTTGCAGATGAGTCCTACGAAGCCTGCATTGCTCGGGAGATGCTTGAA GAAATAGGGATTTCCGTCCCTTTCAGGAGATTATTCAAGATCCCCTGCATCCGGGAAAACAAAGGGGCTTACCATACCAT ATTCTCAGGCAGATGCTCGGAAGAGGCTGCAAGCCTTATCCGGCATGACCTGGAAGAAGCTACATCCATTGAGTGGGTGG AACTCGAAGAACTGCACAGGGCTGTTAAAGCAGAGCCCGGCAACTATACTCCCGCCCTCAGGGAAGGAATAATAAAGATC TTTAAAGAAGGGTGCGAAAAATATCTGTTCTGA
Upstream 100 bases:
>100_bases TTATGCTTTATTTCACCGAAAACTTTTTTGGACTCTTTTTCTATAAAATAGAAGAACAGAGTCAGAGTAAGGTTAGACAA GGAGGCTTTTTCTGGTAGAA
Downstream 100 bases:
>100_bases TGCTCATTATCTAAAAATTAATGGAAACAGTATTCATCACATATTTATAACTTCACGCTGCTGTGTGACAGCTTCAAGAC CTATCTTCACCCGGCATCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 170; Mature: 170
Protein sequence:
>170_residues MISEVDMDDNFLGLRARDEFYSGKHIHRASQLILLDPENRILLQKRSPGKFWFPNRYTYSVSGTVADESYEACIAREMLE EIGISVPFRRLFKIPCIRENKGAYHTIFSGRCSEEAASLIRHDLEEATSIEWVELEELHRAVKAEPGNYTPALREGIIKI FKEGCEKYLF
Sequences:
>Translated_170_residues MISEVDMDDNFLGLRARDEFYSGKHIHRASQLILLDPENRILLQKRSPGKFWFPNRYTYSVSGTVADESYEACIAREMLE EIGISVPFRRLFKIPCIRENKGAYHTIFSGRCSEEAASLIRHDLEEATSIEWVELEELHRAVKAEPGNYTPALREGIIKI FKEGCEKYLF >Mature_170_residues MISEVDMDDNFLGLRARDEFYSGKHIHRASQLILLDPENRILLQKRSPGKFWFPNRYTYSVSGTVADESYEACIAREMLE EIGISVPFRRLFKIPCIRENKGAYHTIFSGRCSEEAASLIRHDLEEATSIEWVELEELHRAVKAEPGNYTPALREGIIKI FKEGCEKYLF
Specific function: Unknown
COG id: COG0494
COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19677; Mature: 19677
Theoretical pI: Translated: 5.68; Mature: 5.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISEVDMDDNFLGLRARDEFYSGKHIHRASQLILLDPENRILLQKRSPGKFWFPNRYTYS CCCCCCCCCCEEEEEECCHHCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCEEEE VSGTVADESYEACIAREMLEEIGISVPFRRLFKIPCIRENKGAYHTIFSGRCSEEAASLI ECCEECCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEECCCCCEEEEECCCCCHHHHHHH RHDLEEATSIEWVELEELHRAVKAEPGNYTPALREGIIKIFKEGCEKYLF HHHHHHHCCCCCEEHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MISEVDMDDNFLGLRARDEFYSGKHIHRASQLILLDPENRILLQKRSPGKFWFPNRYTYS CCCCCCCCCCEEEEEECCHHCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCEEEE VSGTVADESYEACIAREMLEEIGISVPFRRLFKIPCIRENKGAYHTIFSGRCSEEAASLI ECCEECCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEECCCCCEEEEECCCCCHHHHHHH RHDLEEATSIEWVELEELHRAVKAEPGNYTPALREGIIKIFKEGCEKYLF HHHHHHHCCCCCEEHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA