| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228649
Identifier: 21228649
GI number: 21228649
Start: 3033143
End: 3033943
Strand: Reverse
Name: 21228649
Synonym: MM_2547
Alternate gene names: NA
Gene position: 3033943-3033143 (Counterclockwise)
Preceding gene: 21228651
Following gene: 21228648
Centisome position: 74.06
GC content: 43.82
Gene sequence:
>801_bases ATGAAACTGGAATCTGTAAAATTAGCTTATTTTTCACCTACCGGAACAACAAAAGCGGTTGTTCAGGGAATTGCACATGG CATTAATCCAAGCACCGTAGAATTAATTGATATTACCCGACCGGCTGCAAGAAAACAACCCTTGCAGACATCGGAAAATG AATTACTTATAGTTGGAGTTCCCGTATATATGGGGAGAGTGCCGGCATTACTAAATGAATGGCTGAACGCAATTCAGGCT CATAATACGCCAACGGTCTGTGTTGTTGTCTATGGTAACCGCGTGTATGACGATGCACTGCTCGAACTAAAAAATATTGT AACTAAATGTGGGTGTATACCCATTGCCTGTGCAGCATATATCGGGGAACACTCATTCTCAAATTCCGAGACACCAACAG CACAGGGACGCCCAGATAAAGATGACTTAAACCACGCAGAAGCATTCGGACAGAAAATACATGAAAAACTGCAATCCATT TCATCAACCTCTCAGGATTCTGATGTGCAGGTGCCTGGAACTTATCCTTATGGTGGGGTTACAGAATTGTGGACTGTTGA TTTTATCGCAGTCAGTGATGATTGTTCGCAGTGCGGAACCTGTGCAGAGGTGTGCCCAGTTGGTGCTATCGATCCAGAAA ATAGTAATTTGACTGATACAGGAAAATGCATTACCTGCTGTGCGTGTATCAAGAACTGTCCTCAAAACGCCAGGTCGATG AAACCCGGGCTGGTCAAGGACGCATCTGTGCGCCTTCATACACTCTATAGTCAGCGAAAAGAGCCTGAATTTTTTATCTA A
Upstream 100 bases:
>100_bases ATACTTTTAGCTAACTCACAGTTATTCACTAACCAATAGTTATTTAATCACCCATAGTTATATTATATCCCGGAGTTACA CAATAGATGGAGTAAATAAA
Downstream 100 bases:
>100_bases TGAATATATCCCGGATATACGGGTTAAATGGAGTGGAATTATGGGAATAGCCGATAGAAGGCAACGGGAAAAGGAACAGA GAAGGACCGAGATTATCGAT
Product: putative ferredoxin
Products: NA
Alternate protein names: 4Fe-4S Ferredoxin; Flavodoxin; Flavodoxin/Nitric Oxide Synthase; Iron-Sulfur Proteins
Number of amino acids: Translated: 266; Mature: 266
Protein sequence:
>266_residues MKLESVKLAYFSPTGTTKAVVQGIAHGINPSTVELIDITRPAARKQPLQTSENELLIVGVPVYMGRVPALLNEWLNAIQA HNTPTVCVVVYGNRVYDDALLELKNIVTKCGCIPIACAAYIGEHSFSNSETPTAQGRPDKDDLNHAEAFGQKIHEKLQSI SSTSQDSDVQVPGTYPYGGVTELWTVDFIAVSDDCSQCGTCAEVCPVGAIDPENSNLTDTGKCITCCACIKNCPQNARSM KPGLVKDASVRLHTLYSQRKEPEFFI
Sequences:
>Translated_266_residues MKLESVKLAYFSPTGTTKAVVQGIAHGINPSTVELIDITRPAARKQPLQTSENELLIVGVPVYMGRVPALLNEWLNAIQA HNTPTVCVVVYGNRVYDDALLELKNIVTKCGCIPIACAAYIGEHSFSNSETPTAQGRPDKDDLNHAEAFGQKIHEKLQSI SSTSQDSDVQVPGTYPYGGVTELWTVDFIAVSDDCSQCGTCAEVCPVGAIDPENSNLTDTGKCITCCACIKNCPQNARSM KPGLVKDASVRLHTLYSQRKEPEFFI >Mature_266_residues MKLESVKLAYFSPTGTTKAVVQGIAHGINPSTVELIDITRPAARKQPLQTSENELLIVGVPVYMGRVPALLNEWLNAIQA HNTPTVCVVVYGNRVYDDALLELKNIVTKCGCIPIACAAYIGEHSFSNSETPTAQGRPDKDDLNHAEAFGQKIHEKLQSI SSTSQDSDVQVPGTYPYGGVTELWTVDFIAVSDDCSQCGTCAEVCPVGAIDPENSNLTDTGKCITCCACIKNCPQNARSM KPGLVKDASVRLHTLYSQRKEPEFFI
Specific function: Unknown
COG id: COG2221
COG function: function code C; Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28806; Mature: 28806
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: PS00198 4FE4S_FERREDOXIN ; PS50902 FLAVODOXIN_LIKE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.9 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 4.9 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLESVKLAYFSPTGTTKAVVQGIAHGINPSTVELIDITRPAARKQPLQTSENELLIVGV CCCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHCCCCCCCCCCEEEEEC PVYMGRVPALLNEWLNAIQAHNTPTVCVVVYGNRVYDDALLELKNIVTKCGCIPIACAAY HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHH IGEHSFSNSETPTAQGRPDKDDLNHAEAFGQKIHEKLQSISSTSQDSDVQVPGTYPYGGV HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCC TELWTVDFIAVSDDCSQCGTCAEVCPVGAIDPENSNLTDTGKCITCCACIKNCPQNARSM CHHEEEEEEEECCCHHHHCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHC KPGLVKDASVRLHTLYSQRKEPEFFI CCCCCCCCHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MKLESVKLAYFSPTGTTKAVVQGIAHGINPSTVELIDITRPAARKQPLQTSENELLIVGV CCCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHCCCCCCCCCCEEEEEC PVYMGRVPALLNEWLNAIQAHNTPTVCVVVYGNRVYDDALLELKNIVTKCGCIPIACAAY HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHH IGEHSFSNSETPTAQGRPDKDDLNHAEAFGQKIHEKLQSISSTSQDSDVQVPGTYPYGGV HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCC TELWTVDFIAVSDDCSQCGTCAEVCPVGAIDPENSNLTDTGKCITCCACIKNCPQNARSM CHHEEEEEEEECCCHHHHCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHC KPGLVKDASVRLHTLYSQRKEPEFFI CCCCCCCCHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA