Definition Methanosarcina mazei Go1 chromosome, complete genome.
Accession NC_003901
Length 4,096,345

Click here to switch to the map view.

The map label for this gene is 21228628

Identifier: 21228628

GI number: 21228628

Start: 3012290

End: 3012985

Strand: Reverse

Name: 21228628

Synonym: MM_2526

Alternate gene names: NA

Gene position: 3012985-3012290 (Counterclockwise)

Preceding gene: 21228629

Following gene: 21228626

Centisome position: 73.55

GC content: 46.26

Gene sequence:

>696_bases
ATGAAAAAAGTTGTAACCCTCCAGCATATTTATGGAAAAAACCGGGAAACGATGGCTGAACTCCTGAAAACCCTGGTTGA
GAATGAATTGAAAGACCTCGAAGTAAAGGTTGATGTATCCATTACCCCGGAAAACTGGGCAGAATTCTCCCTTGAAGGGG
AAGACGAAGAGGTATCAGCAAACCTCCTGGAGTCCAGATACGGAAGCCCTGCAAAAAAAGCCGAACCCGGAAAGATATAT
ATGGGTTTTCTTCAGGCTTTTCCTGAAGATTCTTTTATTGTCAATATCGGAGTCCCTGTGCAGGTTGAAGCTGAAGAACT
CAAAGCACTGGGAACCGGGAAGCCAAAACAGCTTGCTTCAAGGTTTGGCCTGATCCCTCACCTGCCTGTTGAAATAGAGG
TGCTGGAGGCAAATAAAAAGATAAAAGCCCGCTTCACTAAAAAACAGCTTGACCTCTGGTGGGGCTGGAAAAAAGCAAGC
ACGGACAGAGTTGTCATTAATGCTGCTACCAGATCGGAAATAAAAAGCGCTATAAAAAAGACAGGCCACGGCAGGGATAT
CTACGAAATAGAACGCCTTGGTCTTCTTGAGCATGCAGTCGTATGCCGGGAAACAACAGACGGACCAGGAATTGTGGCAG
CAATAGGCCCTCGCCTGAAGTCAGAGATGGGAGTTGTAATAGGGGATTCCCGTTAA

Upstream 100 bases:

>100_bases
AGAAACAGAAGGGCTCCTTGAATCTTACCTGAAGGGCTCAAAGCCGGAGAATGTTTGATTCCCGCAGTACGATAGAGAAG
AATGAATTGGCAGGAAAAAA

Downstream 100 bases:

>100_bases
CTCTCATTAATGTATGCCTGTGAGCCTGCCTGAAAAATAGGCTCTGGGCATAAAAAGTAAATTTTTAAGAGGAATTCCCT
GAAACGTTTTACGCCAGAAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MKKVVTLQHIYGKNRETMAELLKTLVENELKDLEVKVDVSITPENWAEFSLEGEDEEVSANLLESRYGSPAKKAEPGKIY
MGFLQAFPEDSFIVNIGVPVQVEAEELKALGTGKPKQLASRFGLIPHLPVEIEVLEANKKIKARFTKKQLDLWWGWKKAS
TDRVVINAATRSEIKSAIKKTGHGRDIYEIERLGLLEHAVVCRETTDGPGIVAAIGPRLKSEMGVVIGDSR

Sequences:

>Translated_231_residues
MKKVVTLQHIYGKNRETMAELLKTLVENELKDLEVKVDVSITPENWAEFSLEGEDEEVSANLLESRYGSPAKKAEPGKIY
MGFLQAFPEDSFIVNIGVPVQVEAEELKALGTGKPKQLASRFGLIPHLPVEIEVLEANKKIKARFTKKQLDLWWGWKKAS
TDRVVINAATRSEIKSAIKKTGHGRDIYEIERLGLLEHAVVCRETTDGPGIVAAIGPRLKSEMGVVIGDSR
>Mature_231_residues
MKKVVTLQHIYGKNRETMAELLKTLVENELKDLEVKVDVSITPENWAEFSLEGEDEEVSANLLESRYGSPAKKAEPGKIY
MGFLQAFPEDSFIVNIGVPVQVEAEELKALGTGKPKQLASRFGLIPHLPVEIEVLEANKKIKARFTKKQLDLWWGWKKAS
TDRVVINAATRSEIKSAIKKTGHGRDIYEIERLGLLEHAVVCRETTDGPGIVAAIGPRLKSEMGVVIGDSR

Specific function: Unknown

COG id: COG4044

COG function: function code S; Uncharacterized protein conserved in archaea

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25691; Mature: 25691

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVVTLQHIYGKNRETMAELLKTLVENELKDLEVKVDVSITPENWAEFSLEGEDEEVSA
CCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHCEEEEEEEEECCCCCEEEEECCCCHHHHH
NLLESRYGSPAKKAEPGKIYMGFLQAFPEDSFIVNIGVPVQVEAEELKALGTGKPKQLAS
HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCEEECHHHHHHHCCCCHHHHHH
RFGLIPHLPVEIEVLEANKKIKARFTKKQLDLWWGWKKASTDRVVINAATRSEIKSAIKK
HCCCCCCCCEEEEEEECCCHHHHHHHHHHHHEEECCCCCCCCEEEEECHHHHHHHHHHHH
TGHGRDIYEIERLGLLEHAVVCRETTDGPGIVAAIGPRLKSEMGVVIGDSR
CCCCCCHHHHHHHHHHHHHHHEEECCCCCEEEEECCCHHHCCCCEEEECCC
>Mature Secondary Structure
MKKVVTLQHIYGKNRETMAELLKTLVENELKDLEVKVDVSITPENWAEFSLEGEDEEVSA
CCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHCEEEEEEEEECCCCCEEEEECCCCHHHHH
NLLESRYGSPAKKAEPGKIYMGFLQAFPEDSFIVNIGVPVQVEAEELKALGTGKPKQLAS
HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCEEECHHHHHHHCCCCHHHHHH
RFGLIPHLPVEIEVLEANKKIKARFTKKQLDLWWGWKKASTDRVVINAATRSEIKSAIKK
HCCCCCCCCEEEEEEECCCHHHHHHHHHHHHEEECCCCCCCCEEEEECHHHHHHHHHHHH
TGHGRDIYEIERLGLLEHAVVCRETTDGPGIVAAIGPRLKSEMGVVIGDSR
CCCCCCHHHHHHHHHHHHHHHEEECCCCCEEEEECCCHHHCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA