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The map label for this gene is rps6e [H]

Identifier: 21228564

GI number: 21228564

Start: 2937367

End: 2937777

Strand: Reverse

Name: rps6e [H]

Synonym: MM_2462

Alternate gene names: 21228564

Gene position: 2937777-2937367 (Counterclockwise)

Preceding gene: 21228565

Following gene: 21228562

Centisome position: 71.72

GC content: 49.88

Gene sequence:

>411_bases
ATGGCAAATTTCAAAGTTGTAGTTTCTGATCCAAAAGAAGCACGTGCTTACCAGATCGATATTAAGGATGCTGAAGCAAA
CGCATTAATCGGAAAGTCAATTGGGGACGTTGTTGACGGTTCCATTTTCGGGCTCGCCGGTTACAAAGTCCAGATTACCG
GTGGCTGCGACGGCAGCGGTTTCGTTATGAAGCCGGACCTTCCGGGCCCCAGAAGACAGAGAATCCTTACCGCAACAGGT
GTAGGTTATGTTCCCAAGCTTCCGGGACAGCGCAGGAGAAAAATGATGCGCGGAAAGGAAATTGCTCCCGACATAGTCCA
GGTCAACGCCAAGGTAGTCGAATACGGAAGCAAGTCCATAAAAGCCCTTCTCGGCCTTGAAACCGCAGAAGAAGCTCCAG
CAGCAGAATAA

Upstream 100 bases:

>100_bases
CATATTCAGGATGCAGCAGGACGGGTAAGAATTCCGGATAACTCAGATAAAAAGCAAGGTAAAGGAATTATTAAAAATAA
ATCTGATTGGAGGATTTCAC

Downstream 100 bases:

>100_bases
TTTCAAATTCCGCCTTCGGGCGGGATTTAATAACTCTTTGATTTTCATTTGTAAATTCTTTTTTTTCTAACTCTTAAGTT
TTTTTACATTCTTTGCGCTT

Product: 30S ribosomal protein S6e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MANFKVVVSDPKEARAYQIDIKDAEANALIGKSIGDVVDGSIFGLAGYKVQITGGCDGSGFVMKPDLPGPRRQRILTATG
VGYVPKLPGQRRRKMMRGKEIAPDIVQVNAKVVEYGSKSIKALLGLETAEEAPAAE

Sequences:

>Translated_136_residues
MANFKVVVSDPKEARAYQIDIKDAEANALIGKSIGDVVDGSIFGLAGYKVQITGGCDGSGFVMKPDLPGPRRQRILTATG
VGYVPKLPGQRRRKMMRGKEIAPDIVQVNAKVVEYGSKSIKALLGLETAEEAPAAE
>Mature_135_residues
ANFKVVVSDPKEARAYQIDIKDAEANALIGKSIGDVVDGSIFGLAGYKVQITGGCDGSGFVMKPDLPGPRRQRILTATGV
GYVPKLPGQRRRKMMRGKEIAPDIVQVNAKVVEYGSKSIKALLGLETAEEAPAAE

Specific function: Unknown

COG id: COG2125

COG function: function code J; Ribosomal protein S6E (S10)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S6e family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001377
- InterPro:   IPR020924
- InterPro:   IPR018282 [H]

Pfam domain/function: PF01092 Ribosomal_S6e [H]

EC number: NA

Molecular weight: Translated: 14473; Mature: 14342

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS00578 RIBOSOMAL_S6E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANFKVVVSDPKEARAYQIDIKDAEANALIGKSIGDVVDGSIFGLAGYKVQITGGCDGSG
CCCEEEEEECCCCCEEEEEEECCCCCCEEECCCCCHHHCCCEEEEECEEEEEECCCCCCC
FVMKPDLPGPRRQRILTATGVGYVPKLPGQRRRKMMRGKEIAPDIVQVNAKVVEYGSKSI
EEECCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHEEECCCHHH
KALLGLETAEEAPAAE
HHHHCCCCCCCCCCCC
>Mature Secondary Structure 
ANFKVVVSDPKEARAYQIDIKDAEANALIGKSIGDVVDGSIFGLAGYKVQITGGCDGSG
CCEEEEEECCCCCEEEEEEECCCCCCEEECCCCCHHHCCCEEEEECEEEEEECCCCCCC
FVMKPDLPGPRRQRILTATGVGYVPKLPGQRRRKMMRGKEIAPDIVQVNAKVVEYGSKSI
EEECCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHEEECCCHHH
KALLGLETAEEAPAAE
HHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11932238 [H]