| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228504
Identifier: 21228504
GI number: 21228504
Start: 2862852
End: 2863730
Strand: Reverse
Name: 21228504
Synonym: MM_2402
Alternate gene names: NA
Gene position: 2863730-2862852 (Counterclockwise)
Preceding gene: 21228505
Following gene: 21228503
Centisome position: 69.91
GC content: 47.55
Gene sequence:
>879_bases ATGGTAACAATTGGGCTTTCGAGAGACAAGGATGTCCTGAAGTCAGTCAGGACAGCAGTGGAGCTTGCAGGAGGACTTGG AATCAAAGAAGGGGATACAGTATTGATCCGACCCAATGCAAATACTGCGGATCCTGCTCCTGGATCGACAAGTCCTGAGG TTTTGAGGGGCGCGATAAGGGAGGTAAAAAGATACAATCCGGGAAAAATAATTGTGGCTGAGAAGTCGATGACGACCCTG GATACTGAAAAAGTGCTTAAAAAACTGGGGTTATGGCAGGTAGCAGAGGGGGAAGGGGTTGATGAGATCCTGACATTCGA CCACCTGAAACGTGAACATGTCGAGCCAGAGAAGGCTTATTCCTGGCCTTTTGGATTTGATGTGCCTGAATTTCTGGGAT CTGTGGATTACACAATCGCTCTTCCGGTAATCAAGACCCACTGGACTGCTATATTTACAATGGGACTCAAGTCCCAGATA AGCATAACCGCAGACAGAGACAGGAGGCAACTCCCTCACGGGCAGGGTATGGATATGCTTTTCGGAAATATGATTGCCGA ATCCAACCTTGTTTATAAGCCTGATTTCTATATATCGGATGCTACAAAGTGCTTTGTGACCGAAGGTCCGAATACAGGTA CTTTGCGGGAACCGGGGATTGTCCTTGCAAGCCCGGATGTGATTGCAAATGATGTTACAGGGCTTGCCCTCCTTAAAACA CTGGGCACGGTTCCGAAAATCCAGAGAAATTCAGTCTGGGCTCAGCCCCAGATAAAAAGGGCTGTAGAACTGGGGCTGGG AGTGAAAAACAGGGAAGAAATCACGGTAAAGGGCCTGGGAATTGAAGAGATAAATAAAATTATCGCCAGTCTTGCCTGA
Upstream 100 bases:
>100_bases GTGTCACTGGCAGATTATTTTTAATCGGACTTCAAAGCGGCTATAGAAATTATACGATGTTTTTATACCTCGGGTTACAA TTACTTTATAGGAATTCGAT
Downstream 100 bases:
>100_bases TCCATCTTTCATTGCAGGGTCCGATTGCCTTGGGAGTCCGAAAGATAATCTGAATATTCAATGCCATTCAAATATGCTGA TATATCACCATAATTTATTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 292; Mature: 292
Protein sequence:
>292_residues MVTIGLSRDKDVLKSVRTAVELAGGLGIKEGDTVLIRPNANTADPAPGSTSPEVLRGAIREVKRYNPGKIIVAEKSMTTL DTEKVLKKLGLWQVAEGEGVDEILTFDHLKREHVEPEKAYSWPFGFDVPEFLGSVDYTIALPVIKTHWTAIFTMGLKSQI SITADRDRRQLPHGQGMDMLFGNMIAESNLVYKPDFYISDATKCFVTEGPNTGTLREPGIVLASPDVIANDVTGLALLKT LGTVPKIQRNSVWAQPQIKRAVELGLGVKNREEITVKGLGIEEINKIIASLA
Sequences:
>Translated_292_residues MVTIGLSRDKDVLKSVRTAVELAGGLGIKEGDTVLIRPNANTADPAPGSTSPEVLRGAIREVKRYNPGKIIVAEKSMTTL DTEKVLKKLGLWQVAEGEGVDEILTFDHLKREHVEPEKAYSWPFGFDVPEFLGSVDYTIALPVIKTHWTAIFTMGLKSQI SITADRDRRQLPHGQGMDMLFGNMIAESNLVYKPDFYISDATKCFVTEGPNTGTLREPGIVLASPDVIANDVTGLALLKT LGTVPKIQRNSVWAQPQIKRAVELGLGVKNREEITVKGLGIEEINKIIASLA >Mature_292_residues MVTIGLSRDKDVLKSVRTAVELAGGLGIKEGDTVLIRPNANTADPAPGSTSPEVLRGAIREVKRYNPGKIIVAEKSMTTL DTEKVLKKLGLWQVAEGEGVDEILTFDHLKREHVEPEKAYSWPFGFDVPEFLGSVDYTIALPVIKTHWTAIFTMGLKSQI SITADRDRRQLPHGQGMDMLFGNMIAESNLVYKPDFYISDATKCFVTEGPNTGTLREPGIVLASPDVIANDVTGLALLKT LGTVPKIQRNSVWAQPQIKRAVELGLGVKNREEITVKGLGIEEINKIIASLA
Specific function: Unknown
COG id: COG2006
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31887; Mature: 31887
Theoretical pI: Translated: 6.54; Mature: 6.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVTIGLSRDKDVLKSVRTAVELAGGLGIKEGDTVLIRPNANTADPAPGSTSPEVLRGAIR CEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHH EVKRYNPGKIIVAEKSMTTLDTEKVLKKLGLWQVAEGEGVDEILTFDHLKREHVEPEKAY HHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHCCCHHHHC SWPFGFDVPEFLGSVDYTIALPVIKTHWTAIFTMGLKSQISITADRDRRQLPHGQGMDML CCCCCCCHHHHHCCCCEEEEECHHHHHHHHHHEECCCCEEEEEECCHHHCCCCCCCHHHH FGNMIAESNLVYKPDFYISDATKCFVTEGPNTGTLREPGIVLASPDVIANDVTGLALLKT HHHHHHCCCEEECCCEEECCCCEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHH LGTVPKIQRNSVWAQPQIKRAVELGLGVKNREEITVKGLGIEEINKIIASLA HCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHCC >Mature Secondary Structure MVTIGLSRDKDVLKSVRTAVELAGGLGIKEGDTVLIRPNANTADPAPGSTSPEVLRGAIR CEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHH EVKRYNPGKIIVAEKSMTTLDTEKVLKKLGLWQVAEGEGVDEILTFDHLKREHVEPEKAY HHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHCCCHHHHC SWPFGFDVPEFLGSVDYTIALPVIKTHWTAIFTMGLKSQISITADRDRRQLPHGQGMDML CCCCCCCHHHHHCCCCEEEEECHHHHHHHHHHEECCCCEEEEEECCHHHCCCCCCCHHHH FGNMIAESNLVYKPDFYISDATKCFVTEGPNTGTLREPGIVLASPDVIANDVTGLALLKT HHHHHHCCCEEECCCEEECCCCEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHH LGTVPKIQRNSVWAQPQIKRAVELGLGVKNREEITVKGLGIEEINKIIASLA HCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA