Click here to switch to the map view.

The map label for this gene is 21228485

Identifier: 21228485

GI number: 21228485

Start: 2841563

End: 2841787

Strand: Direct

Name: 21228485

Synonym: MM_2383

Alternate gene names: NA

Gene position: 2841563-2841787 (Clockwise)

Preceding gene: 21228484

Following gene: 21228486

Centisome position: 69.37

GC content: 41.78

Gene sequence:

>225_bases
TTGTTCCCAAATAAAAAAGTTCAGAAAATTGTTGGATCAAGGATCCAGGTAGAAATGAAAGGCGACCTTAATTTGCTTGA
AGGCACTCTGAAGAGCGTGGACGACTACATGAATCTTCATCTTGTTGATACGATGGAGATAGTTAAAGGGGAAAAAGTCC
GCTCCCTTGGTTCTGTAGTGCTTCGGGGCAATAATATCATACTGATCACTCCTGTCGAAGACTGA

Upstream 100 bases:

>100_bases
GCCCTGACACAATTTGCCCTGCCCGGCTTTGGAAAAAGAGAAGCATTACCCGGGAGTACGGGGAACCGAAAATTCAGAAC
AAATCAGCGAGGGTTTAAAT

Downstream 100 bases:

>100_bases
AACGTCTGAAGAAGGAACCTCATTAGTGTGTGGAAGCAGGCATGGATCTTGAAGAAGAAGCATATAACATAATACGAAGA
CATAAAGACGGCGTTTTCCA

Product: small nuclear riboprotein-like protein

Products: NA

Alternate protein names: Small Ribonucleoprotein; Small Nuclear Ribonucleoprotein LSM Family; Small Nucleolar RNP Sm Protein; Small Nuclear Riboprotein-Like Protein

Number of amino acids: Translated: 74; Mature: 74

Protein sequence:

>74_residues
MFPNKKVQKIVGSRIQVEMKGDLNLLEGTLKSVDDYMNLHLVDTMEIVKGEKVRSLGSVVLRGNNIILITPVED

Sequences:

>Translated_74_residues
MFPNKKVQKIVGSRIQVEMKGDLNLLEGTLKSVDDYMNLHLVDTMEIVKGEKVRSLGSVVLRGNNIILITPVED
>Mature_74_residues
MFPNKKVQKIVGSRIQVEMKGDLNLLEGTLKSVDDYMNLHLVDTMEIVKGEKVRSLGSVVLRGNNIILITPVED

Specific function: Unknown

COG id: COG1958

COG function: function code K; Small nuclear ribonucleoprotein (snRNP) homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8281; Mature: 8281

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFPNKKVQKIVGSRIQVEMKGDLNLLEGTLKSVDDYMNLHLVDTMEIVKGEKVRSLGSVV
CCCCHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHEEEEECHHHHHCCHHHHCCCEEE
LRGNNIILITPVED
EECCCEEEEEECCC
>Mature Secondary Structure
MFPNKKVQKIVGSRIQVEMKGDLNLLEGTLKSVDDYMNLHLVDTMEIVKGEKVRSLGSVV
CCCCHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHEEEEECHHHHHCCHHHHCCCEEE
LRGNNIILITPVED
EECCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA