Definition Methanosarcina mazei Go1 chromosome, complete genome.
Accession NC_003901
Length 4,096,345

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The map label for this gene is 21228395

Identifier: 21228395

GI number: 21228395

Start: 2735284

End: 2736504

Strand: Reverse

Name: 21228395

Synonym: MM_2293

Alternate gene names: NA

Gene position: 2736504-2735284 (Counterclockwise)

Preceding gene: 21228396

Following gene: 21228394

Centisome position: 66.8

GC content: 45.78

Gene sequence:

>1221_bases
ATGAGCGCGGAAGGCATCGCCGAAAATATCCCACCTGGCTACAAACAGACGGAGGTGGGGGTGATACCGGAGGATTGGAA
TGATCCAAAACTCGAAGATATTGTAAAAGAGGAATCTCCAATCTGCTATGGTATCGTTCAAGTTGGCTCTTACACAGCAA
ACGGTATTCCTGTGCTTGCTATCAAGAATCTTAACTCTGACTATACCACCAACATTCATCGCGCATCAGTTGAAGTAGAA
CGTCCCTATCTCAGAAGCCGTGTTTATCCAGAAGATGTTCTGATTTCAGTAAAAGGAACAACAGGACGTATTGGGATTGT
ACCACTTGGATTTTACGGGAACATCAGCCGTGACCTTGCCCGACTTCATCTTCGTGAAGGTATTGTTCCTAAGTTCATCT
TCCAAATGCTTCAATCTAACTTGATGCAACAGCATCTAGGGGTGGCTGTTGTTGGTACAACGCGAATGGAACTTTCGATT
TCTATCTTGAAAAAGGTCAGAATTCCATTCCCACCCACTAAAGCCGAACAAGAATCCATCGCCGAAGCCCTTTCCTATAC
GGATGCCTTCATCGAATCCCTTGAGCAGCTCATCGCCAAGAAACGCCAGATTAAACAGGGCGCCATGCAGGAGTTGCTGA
CTGGGAAGAGAAGGCTTCCGGGGTTTAGTAAGGAATGGGAAACGAAGCCTTTGGGCGATGTTGCTGAGATTACCATGGGA
CAATCTCCAAGCTCGGCAAACTACAATAGCAAAGGAGAAGGGTTACCGTTAATCCAAGGAAATGCCGACATCTTTAACCG
TAAAACTATCAAGAGAGTCTTTACAACCGAGATTACAAGAAGAGGCAAATGTGGGGATATTATTATGTCCGTTCGTGCAC
CTGTAGGAGAAGTTTCACGGGCTGAATTCGATATCTGCCTCGGTCGTGGTGTATGTGCAATCCGTTACTCAAACAATTTC
CTCTATCATACCCTAATCTCAAAAGAGTCTACTTGGGCAAAGCTATCAAAAGGCTCTACTTTTGATTCAGTGAATTCAGC
AGATGTAAAGGCTTTTGACATCGAATTACCGACAGACTCTGCTGAACAAGAAGCCATCGCCACTATTCTCTCCGACATGG
ATGCGGAAATCACCGCACTGGAAGAAAAGCTTGCCAAAGCCCGCCAGATCAAGCAGGGTATGATGCAGGAACTGCTTACA
GGGAGGACTCGATTGGTATGA

Upstream 100 bases:

>100_bases
TCGCCGAACGCTACGAAATCCCGATGCCGCAGATGACTGACCGCGTGGCTGAACTGGAAGCAAAAGTGAACCGACACTTG
GAGAGGATGGGGTTTAGGCT

Downstream 100 bases:

>100_bases
ACATCGGCAAGCCCGAACGAGCCACCCAGGACCGAATAATTTCTCTTTTTCACGATGAGCTTGGCTACAGCTACCTAGGG
AACTGGATTGACCGTGAAGG

Product: type I restriction-modification system specificity subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MSAEGIAENIPPGYKQTEVGVIPEDWNDPKLEDIVKEESPICYGIVQVGSYTANGIPVLAIKNLNSDYTTNIHRASVEVE
RPYLRSRVYPEDVLISVKGTTGRIGIVPLGFYGNISRDLARLHLREGIVPKFIFQMLQSNLMQQHLGVAVVGTTRMELSI
SILKKVRIPFPPTKAEQESIAEALSYTDAFIESLEQLIAKKRQIKQGAMQELLTGKRRLPGFSKEWETKPLGDVAEITMG
QSPSSANYNSKGEGLPLIQGNADIFNRKTIKRVFTTEITRRGKCGDIIMSVRAPVGEVSRAEFDICLGRGVCAIRYSNNF
LYHTLISKESTWAKLSKGSTFDSVNSADVKAFDIELPTDSAEQEAIATILSDMDAEITALEEKLAKARQIKQGMMQELLT
GRTRLV

Sequences:

>Translated_406_residues
MSAEGIAENIPPGYKQTEVGVIPEDWNDPKLEDIVKEESPICYGIVQVGSYTANGIPVLAIKNLNSDYTTNIHRASVEVE
RPYLRSRVYPEDVLISVKGTTGRIGIVPLGFYGNISRDLARLHLREGIVPKFIFQMLQSNLMQQHLGVAVVGTTRMELSI
SILKKVRIPFPPTKAEQESIAEALSYTDAFIESLEQLIAKKRQIKQGAMQELLTGKRRLPGFSKEWETKPLGDVAEITMG
QSPSSANYNSKGEGLPLIQGNADIFNRKTIKRVFTTEITRRGKCGDIIMSVRAPVGEVSRAEFDICLGRGVCAIRYSNNF
LYHTLISKESTWAKLSKGSTFDSVNSADVKAFDIELPTDSAEQEAIATILSDMDAEITALEEKLAKARQIKQGMMQELLT
GRTRLV
>Mature_405_residues
SAEGIAENIPPGYKQTEVGVIPEDWNDPKLEDIVKEESPICYGIVQVGSYTANGIPVLAIKNLNSDYTTNIHRASVEVER
PYLRSRVYPEDVLISVKGTTGRIGIVPLGFYGNISRDLARLHLREGIVPKFIFQMLQSNLMQQHLGVAVVGTTRMELSIS
ILKKVRIPFPPTKAEQESIAEALSYTDAFIESLEQLIAKKRQIKQGAMQELLTGKRRLPGFSKEWETKPLGDVAEITMGQ
SPSSANYNSKGEGLPLIQGNADIFNRKTIKRVFTTEITRRGKCGDIIMSVRAPVGEVSRAEFDICLGRGVCAIRYSNNFL
YHTLISKESTWAKLSKGSTFDSVNSADVKAFDIELPTDSAEQEAIATILSDMDAEITALEEKLAKARQIKQGMMQELLTG
RTRLV

Specific function: Unknown

COG id: COG0732

COG function: function code V; Restriction endonuclease S subunits

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ0130 and MJ1218 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000055 [H]

Pfam domain/function: PF01420 Methylase_S [H]

EC number: NA

Molecular weight: Translated: 44969; Mature: 44838

Theoretical pI: Translated: 7.45; Mature: 7.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAEGIAENIPPGYKQTEVGVIPEDWNDPKLEDIVKEESPICYGIVQVGSYTANGIPVLA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEECCCCCCCEEEEE
IKNLNSDYTTNIHRASVEVERPYLRSRVYPEDVLISVKGTTGRIGIVPLGFYGNISRDLA
EECCCCCCCCCEEEEEEEECCHHHHHCCCCCCEEEEEECCCCEEEEEEECCCCCHHHHHH
RLHLREGIVPKFIFQMLQSNLMQQHLGVAVVGTTRMELSISILKKVRIPFPPTKAEQESI
HHHHHHCCHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHH
AEALSYTDAFIESLEQLIAKKRQIKQGAMQELLTGKRRLPGFSKEWETKPLGDVAEITMG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCC
QSPSSANYNSKGEGLPLIQGNADIFNRKTIKRVFTTEITRRGKCGDIIMSVRAPVGEVSR
CCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHEECCCCCCHHHH
AEFDICLGRGVCAIRYSNNFLYHTLISKESTWAKLSKGSTFDSVNSADVKAFDIELPTDS
HHHHEEECCCEEEEEECCCEEEEEEECCCCHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
AEQEAIATILSDMDAEITALEEKLAKARQIKQGMMQELLTGRTRLV
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCC
>Mature Secondary Structure 
SAEGIAENIPPGYKQTEVGVIPEDWNDPKLEDIVKEESPICYGIVQVGSYTANGIPVLA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEECCCCCCCEEEEE
IKNLNSDYTTNIHRASVEVERPYLRSRVYPEDVLISVKGTTGRIGIVPLGFYGNISRDLA
EECCCCCCCCCEEEEEEEECCHHHHHCCCCCCEEEEEECCCCEEEEEEECCCCCHHHHHH
RLHLREGIVPKFIFQMLQSNLMQQHLGVAVVGTTRMELSISILKKVRIPFPPTKAEQESI
HHHHHHCCHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHH
AEALSYTDAFIESLEQLIAKKRQIKQGAMQELLTGKRRLPGFSKEWETKPLGDVAEITMG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCC
QSPSSANYNSKGEGLPLIQGNADIFNRKTIKRVFTTEITRRGKCGDIIMSVRAPVGEVSR
CCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHEECCCCCCHHHH
AEFDICLGRGVCAIRYSNNFLYHTLISKESTWAKLSKGSTFDSVNSADVKAFDIELPTDS
HHHHEEECCCEEEEEECCCEEEEEEECCCCHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
AEQEAIATILSDMDAEITALEEKLAKARQIKQGMMQELLTGRTRLV
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]