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The map label for this gene is rpl30e

Identifier: 21228371

GI number: 21228371

Start: 2694492

End: 2694803

Strand: Reverse

Name: rpl30e

Synonym: MM_2269

Alternate gene names: 21228371

Gene position: 2694803-2694492 (Counterclockwise)

Preceding gene: 21228372

Following gene: 21228370

Centisome position: 65.79

GC content: 43.91

Gene sequence:

>312_bases
TTGAGACGAGAGTTGATGAAAATGAAGATTAATGTTGATAAATCTCTTATTAAGGCTGTGAAAACAGGAAAAGTAATAAT
CGGAGCCAACAGGACCGTTGATGCAGCAGAAAATGGCTCAGCAAAAATGGTGGTTCTGGCATCAAACTGCCCGGCAGATA
TTAAGAAGAAAGTTCAGGAAACAAATGTTCCGGTTCTTGAATACGAAGGCACAAGTGTGGAACTCGGGCCCGTATGCGGA
AAGCCGTTCACGATTGCAGCCATGGCAATCCTTGATGCAGGCGAATCAGATATACTTGCAGCTACAGCTTGA

Upstream 100 bases:

>100_bases
ATAACCAGAAAATTGATATAAGGCATCAGGTATTTAGAGTACCATATACTCACCGAGCTTGGAATCTTTATTTAGAAAGA
GATAGAGTAGACGAGCGAAT

Downstream 100 bases:

>100_bases
GAAAAAGGAGTTGCAGCGTCTTGGGTGAAATAAGACTTACTGCAGAAAGCATCCAGTACATTGCATTGTTTGAAAACATG
ACACGGGCCAAGATACTTGA

Product: 50S ribosomal protein L30e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 103; Mature: 103

Protein sequence:

>103_residues
MRRELMKMKINVDKSLIKAVKTGKVIIGANRTVDAAENGSAKMVVLASNCPADIKKKVQETNVPVLEYEGTSVELGPVCG
KPFTIAAMAILDAGESDILAATA

Sequences:

>Translated_103_residues
MRRELMKMKINVDKSLIKAVKTGKVIIGANRTVDAAENGSAKMVVLASNCPADIKKKVQETNVPVLEYEGTSVELGPVCG
KPFTIAAMAILDAGESDILAATA
>Mature_103_residues
MRRELMKMKINVDKSLIKAVKTGKVIIGANRTVDAAENGSAKMVVLASNCPADIKKKVQETNVPVLEYEGTSVELGPVCG
KPFTIAAMAILDAGESDILAATA

Specific function: Unknown

COG id: COG1911

COG function: function code J; Ribosomal protein L30E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L30e family

Homologues:

Organism=Homo sapiens, GI4506631, Length=93, Percent_Identity=35.4838709677419, Blast_Score=72, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17508679, Length=93, Percent_Identity=34.4086021505376, Blast_Score=69, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6321408, Length=97, Percent_Identity=30.9278350515464, Blast_Score=60, Evalue=4e-11,
Organism=Drosophila melanogaster, GI17864264, Length=84, Percent_Identity=38.0952380952381, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24585096, Length=84, Percent_Identity=38.0952380952381, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL30E_METMA (Q8PUR3)

Other databases:

- EMBL:   AE008384
- RefSeq:   NP_634293.1
- ProteinModelPortal:   Q8PUR3
- SMR:   Q8PUR3
- GeneID:   1480611
- GenomeReviews:   AE008384_GR
- KEGG:   mma:MM_2269
- NMPDR:   fig|192952.1.peg.2269
- HOGENOM:   HBG553631
- OMA:   KYFRVCT
- ProtClustDB:   PRK01018
- BioCyc:   MMAZ192952:MM2269-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00481
- InterPro:   IPR000231
- InterPro:   IPR022991
- InterPro:   IPR004038
- PANTHER:   PTHR11449

Pfam domain/function: PF01248 Ribosomal_L7Ae

EC number: NA

Molecular weight: Translated: 10860; Mature: 10860

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: PS00709 RIBOSOMAL_L30E_1; PS00993 RIBOSOMAL_L30E_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRELMKMKINVDKSLIKAVKTGKVIIGANRTVDAAENGSAKMVVLASNCPADIKKKVQE
CCCCEEEEEECCCHHHHHHHHCCCEEEECCCEECCCCCCCEEEEEEECCCCHHHHHHHHH
TNVPVLEYEGTSVELGPVCGKPFTIAAMAILDAGESDILAATA
CCCCEEEECCCEEEECCCCCCCHHHEEEEEECCCCCCEEEECC
>Mature Secondary Structure
MRRELMKMKINVDKSLIKAVKTGKVIIGANRTVDAAENGSAKMVVLASNCPADIKKKVQE
CCCCEEEEEECCCHHHHHHHHCCCEEEECCCEECCCCCCCEEEEEEECCCCHHHHHHHHH
TNVPVLEYEGTSVELGPVCGKPFTIAAMAILDAGESDILAATA
CCCCEEEECCCEEEECCCCCCCHHHEEEEEECCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12125824