| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228219
Identifier: 21228219
GI number: 21228219
Start: 2528662
End: 2531085
Strand: Direct
Name: 21228219
Synonym: MM_2117
Alternate gene names: NA
Gene position: 2528662-2531085 (Clockwise)
Preceding gene: 21228218
Following gene: 21228220
Centisome position: 61.73
GC content: 43.36
Gene sequence:
>2424_bases ATGCCACACTTAAAAAAATGTGTTTTTGTAGACGATTTGCTTGCAGTTACTATTCTTTCATGTCTGGGAGTTATTTTTGT ACTTGTTCCTCCATTCAATGAAACATTTCTTAGAATTCCTGTAGCGCTGTCCCTCTTTTTTTTCGTTCCCGGTTATGCTT TTATATCCGCACTCTTTCCTGGTAATAAAGAAATCAGCGGGATAGAACGTTTTACATTAAGTGTTGGCTTCAGTCTTGTA CTTACAGTTTTTGACGGCTTTCTAATAAGCCTGCTTCCCTGGGGCTACCGCCCTGCCCCGATAGTTATATCCATTCTTGG GATCACGACTTTCTTCAGTATTCTTGCAATTTTTACACGAAAATTAAAAGATGAAAGCGAGCAGTTCTCTTTTTCATTAA AAGAATTCATAAAATCCATTCAGTCGGATGAGGTTGACGAAGAGCCTGAAGACCCTGAAGAGCCTGAAGAAATGACTTCT CCAGCCGAAGTCAGGCGTTTTCACAGGTCAAAAAGCAAAGTTAAAGCAAAGGGTTTGAAGTACTCTTCGGGTACTGAGGC TAAAACCAAAATCAGAAAAAAGCCCCTGCCTCCGGAAATTGAAAAGGCTCTCGTAATTGCTTTGATAGGCTCTATTATTA TCTCAAGTGCAATGCTCGCATATGCCAAGATGACCCGGGAAAAGGAGACTTTTACAATGCTGTATCTCCTTGGTCCCGAC GGAAAAGCCGAAGGTTATCCGAATGAGAGCTTCATCAATGTCCCTGTTAACGTCACAGTAGGAATTGAAAACCATGAACT TCAGAGTGTAAACTATATCCTCCAGATGAAAGTCGATGAGGAGGTAATTCAGGAGCTTAATGTTCCTTTGAAAGACGGAG AGGTATGGCAGAAGAATTTGACTTACACGCGTCACAGCCTGAAAAATGACAGGTCCAAACTTGAGTTTGCTCTTTTTAAG GAGAAACCGGATTATTTCTCTTACAGGTCTGTCCATCTTTATTTGGATAATAATAACACCTTCACTCATCTGGTCGATGA GAAGTACACTGATGCCTCATCGCTTCCGGTGATTAAAAATGGAGAGATGGAATCTTCAGAAATATGGAACTTTACTTCAA ATACTGAGTATATAACAGGTTCTTATGTAAGTGGGTCCGGAGTAAACTCCTCCCTCGCATACAGAATAAGCAGCTCCTAT AATGGAAGCCTTTTTGATCAGCCAGGGCAATCCGGTGAAATCTCTCAAAATATAACATGTGATGAAGACACCATGGCTGT GCTCTCGGCATACGTGATAGATAACTTCAACTTAACTTCTAAGGAAGACTCTCAGCTAAAATACGTTGCAGTTAATGGAG ACACCGTGTGGACAGACGGGGTCAGCGAAGCGGAAGGGTGGCAGCACCTTGAAATTCCGGTATCTCTTCAGGCAGGAGAG AACAACCTCTCATTCGGTTTGAGGCAGATGCCGGGTGAAATCGTACCTGTTGACGTTTTCTGGGATAGAATTTCCTTTAA ACCTCTTTCAGAACTATCTGCTTATATTTCGGAGACAAATACTGTCGAAACCGTACCTCCAACCTCAAGTGTGCTGGGGC TTCCTGCATTCACGGACAACAAAACCTTTACGGTTTCCTGGAACGGGACAGATGACCTTTCTGGAATTGCTTATTATTCC ATAGACTCAAGCACTGACGGGGTTAACTGGGAGCCATGGATTTCAAAGACAACAGATAACTCTTCCAGCTTTACCGGAAA GGATAACCAGACCTATTACTTCCGTTCAAGAGCTGTCGATAGGGCAGGAAATGAAGAGCCTGAACATCCGGAACCCGATA CCCAGACTCAAATTTACACCGGCGCCCCCAGGGTCATGCTGGACATCTTCCCTAACCCCTGCAAGACTGCCACAACCTTT AATGTAACATATCCGGTGCCTCTCCAGTCCGCAGTATGCCTGGTTACAAGGGACGGTTTTGAGTCCGAATCCTGCGAGCT GACAACTTCGGATAACATTACATGGACGGGTAATTACATTGCAAGGAACGGAGACTACTTCAGAGTAGAAGCTGTGTGTA CGGATGTCTTTGGAAATACGGTCTCCACTCTCGATGAACTCTTTGTCGATCGCTCAATTTCAAACTTTACAATTGAGCTT ACCCCTAGAACCATAAATAAGGGAGACCTGGAAATCAACGTTACTCCCTCAACCACTTTAAAATCCAAACCCTCAGTTTC AGTCTCGGGTAGTCCAGCGGTTAATGTCACCTATCTGACATACTCGGACGGGTCTTACTACTATAAAGCAAGAATTAAGT CCGAACTGAACGAAGGAGAACATAAAGTATCGGTAAATGGTTATGACCTGGAATCCGAACAGATGACAGGCAACACCACT TTTATAGTTGACCATTCTGGTTGA
Upstream 100 bases:
>100_bases TACAGGTCACAGGTTTTTGCTCCCGGGTTATAAAGTCTCGGAAAAATATTTTTAATATTGGGAAAATATTATATCTTTTG TTGAATTACTTCATAGTAGA
Downstream 100 bases:
>100_bases GCAGTTGCTTTGCTGGATAATCTGTACAATGCCAGTTTGATCAACTGACACTATTTTCTTCTATGTTTTTTACATCCTTA AATTTATACTATTTAATTTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 807; Mature: 806
Protein sequence:
>807_residues MPHLKKCVFVDDLLAVTILSCLGVIFVLVPPFNETFLRIPVALSLFFFVPGYAFISALFPGNKEISGIERFTLSVGFSLV LTVFDGFLISLLPWGYRPAPIVISILGITTFFSILAIFTRKLKDESEQFSFSLKEFIKSIQSDEVDEEPEDPEEPEEMTS PAEVRRFHRSKSKVKAKGLKYSSGTEAKTKIRKKPLPPEIEKALVIALIGSIIISSAMLAYAKMTREKETFTMLYLLGPD GKAEGYPNESFINVPVNVTVGIENHELQSVNYILQMKVDEEVIQELNVPLKDGEVWQKNLTYTRHSLKNDRSKLEFALFK EKPDYFSYRSVHLYLDNNNTFTHLVDEKYTDASSLPVIKNGEMESSEIWNFTSNTEYITGSYVSGSGVNSSLAYRISSSY NGSLFDQPGQSGEISQNITCDEDTMAVLSAYVIDNFNLTSKEDSQLKYVAVNGDTVWTDGVSEAEGWQHLEIPVSLQAGE NNLSFGLRQMPGEIVPVDVFWDRISFKPLSELSAYISETNTVETVPPTSSVLGLPAFTDNKTFTVSWNGTDDLSGIAYYS IDSSTDGVNWEPWISKTTDNSSSFTGKDNQTYYFRSRAVDRAGNEEPEHPEPDTQTQIYTGAPRVMLDIFPNPCKTATTF NVTYPVPLQSAVCLVTRDGFESESCELTTSDNITWTGNYIARNGDYFRVEAVCTDVFGNTVSTLDELFVDRSISNFTIEL TPRTINKGDLEINVTPSTTLKSKPSVSVSGSPAVNVTYLTYSDGSYYYKARIKSELNEGEHKVSVNGYDLESEQMTGNTT FIVDHSG
Sequences:
>Translated_807_residues MPHLKKCVFVDDLLAVTILSCLGVIFVLVPPFNETFLRIPVALSLFFFVPGYAFISALFPGNKEISGIERFTLSVGFSLV LTVFDGFLISLLPWGYRPAPIVISILGITTFFSILAIFTRKLKDESEQFSFSLKEFIKSIQSDEVDEEPEDPEEPEEMTS PAEVRRFHRSKSKVKAKGLKYSSGTEAKTKIRKKPLPPEIEKALVIALIGSIIISSAMLAYAKMTREKETFTMLYLLGPD GKAEGYPNESFINVPVNVTVGIENHELQSVNYILQMKVDEEVIQELNVPLKDGEVWQKNLTYTRHSLKNDRSKLEFALFK EKPDYFSYRSVHLYLDNNNTFTHLVDEKYTDASSLPVIKNGEMESSEIWNFTSNTEYITGSYVSGSGVNSSLAYRISSSY NGSLFDQPGQSGEISQNITCDEDTMAVLSAYVIDNFNLTSKEDSQLKYVAVNGDTVWTDGVSEAEGWQHLEIPVSLQAGE NNLSFGLRQMPGEIVPVDVFWDRISFKPLSELSAYISETNTVETVPPTSSVLGLPAFTDNKTFTVSWNGTDDLSGIAYYS IDSSTDGVNWEPWISKTTDNSSSFTGKDNQTYYFRSRAVDRAGNEEPEHPEPDTQTQIYTGAPRVMLDIFPNPCKTATTF NVTYPVPLQSAVCLVTRDGFESESCELTTSDNITWTGNYIARNGDYFRVEAVCTDVFGNTVSTLDELFVDRSISNFTIEL TPRTINKGDLEINVTPSTTLKSKPSVSVSGSPAVNVTYLTYSDGSYYYKARIKSELNEGEHKVSVNGYDLESEQMTGNTT FIVDHSG >Mature_806_residues PHLKKCVFVDDLLAVTILSCLGVIFVLVPPFNETFLRIPVALSLFFFVPGYAFISALFPGNKEISGIERFTLSVGFSLVL TVFDGFLISLLPWGYRPAPIVISILGITTFFSILAIFTRKLKDESEQFSFSLKEFIKSIQSDEVDEEPEDPEEPEEMTSP AEVRRFHRSKSKVKAKGLKYSSGTEAKTKIRKKPLPPEIEKALVIALIGSIIISSAMLAYAKMTREKETFTMLYLLGPDG KAEGYPNESFINVPVNVTVGIENHELQSVNYILQMKVDEEVIQELNVPLKDGEVWQKNLTYTRHSLKNDRSKLEFALFKE KPDYFSYRSVHLYLDNNNTFTHLVDEKYTDASSLPVIKNGEMESSEIWNFTSNTEYITGSYVSGSGVNSSLAYRISSSYN GSLFDQPGQSGEISQNITCDEDTMAVLSAYVIDNFNLTSKEDSQLKYVAVNGDTVWTDGVSEAEGWQHLEIPVSLQAGEN NLSFGLRQMPGEIVPVDVFWDRISFKPLSELSAYISETNTVETVPPTSSVLGLPAFTDNKTFTVSWNGTDDLSGIAYYSI DSSTDGVNWEPWISKTTDNSSSFTGKDNQTYYFRSRAVDRAGNEEPEHPEPDTQTQIYTGAPRVMLDIFPNPCKTATTFN VTYPVPLQSAVCLVTRDGFESESCELTTSDNITWTGNYIARNGDYFRVEAVCTDVFGNTVSTLDELFVDRSISNFTIELT PRTINKGDLEINVTPSTTLKSKPSVSVSGSPAVNVTYLTYSDGSYYYKARIKSELNEGEHKVSVNGYDLESEQMTGNTTF IVDHSG
Specific function: Unknown
COG id: COG4743
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 89982; Mature: 89850
Theoretical pI: Translated: 4.43; Mature: 4.43
Prosite motif: PS50853 FN3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHLKKCVFVDDLLAVTILSCLGVIFVLVPPFNETFLRIPVALSLFFFVPGYAFISALFP CCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHCC GNKEISGIERFTLSVGFSLVLTVFDGFLISLLPWGYRPAPIVISILGITTFFSILAIFTR CCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH KLKDESEQFSFSLKEFIKSIQSDEVDEEPEDPEEPEEMTSPAEVRRFHRSKSKVKAKGLK HHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCC YSSGTEAKTKIRKKPLPPEIEKALVIALIGSIIISSAMLAYAKMTREKETFTMLYLLGPD CCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC GKAEGYPNESFINVPVNVTVGIENHELQSVNYILQMKVDEEVIQELNVPLKDGEVWQKNL CCCCCCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEECCHHHHHHCCCCCCCCCHHHHCC TYTRHSLKNDRSKLEFALFKEKPDYFSYRSVHLYLDNNNTFTHLVDEKYTDASSLPVIKN HHHHHHHHCCHHHEEEEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCCCCCCCCEEEC GEMESSEIWNFTSNTEYITGSYVSGSGVNSSLAYRISSSYNGSLFDQPGQSGEISQNITC CCCCCHHEEEECCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC DEDTMAVLSAYVIDNFNLTSKEDSQLKYVAVNGDTVWTDGVSEAEGWQHLEIPVSLQAGE CHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCEEEEEEEEEECCC NNLSFGLRQMPGEIVPVDVFWDRISFKPLSELSAYISETNTVETVPPTSSVLGLPAFTDN CCCCCCHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCCEEECCCCCHHEECCEECCC KTFTVSWNGTDDLSGIAYYSIDSSTDGVNWEPWISKTTDNSSSFTGKDNQTYYFRSRAVD CEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHH RAGNEEPEHPEPDTQTQIYTGAPRVMLDIFPNPCKTATTFNVTYPVPLQSAVCLVTRDGF CCCCCCCCCCCCCCCCEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEEECCC ESESCELTTSDNITWTGNYIARNGDYFRVEAVCTDVFGNTVSTLDELFVDRSISNFTIEL CCCCCEEEECCCEEECCCEEEECCCEEEEEEEEHHHHCCHHHHHHHHHHCCCCCCEEEEE TPRTINKGDLEINVTPSTTLKSKPSVSVSGSPAVNVTYLTYSDGSYYYKARIKSELNEGE ECCCCCCCCEEEEECCCCCCCCCCCEEECCCCEEEEEEEEECCCCEEEEEEEHHHCCCCC HKVSVNGYDLESEQMTGNTTFIVDHSG EEEEECCCCCCCCCCCCCEEEEEECCC >Mature Secondary Structure PHLKKCVFVDDLLAVTILSCLGVIFVLVPPFNETFLRIPVALSLFFFVPGYAFISALFP CCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHCC GNKEISGIERFTLSVGFSLVLTVFDGFLISLLPWGYRPAPIVISILGITTFFSILAIFTR CCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH KLKDESEQFSFSLKEFIKSIQSDEVDEEPEDPEEPEEMTSPAEVRRFHRSKSKVKAKGLK HHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCC YSSGTEAKTKIRKKPLPPEIEKALVIALIGSIIISSAMLAYAKMTREKETFTMLYLLGPD CCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC GKAEGYPNESFINVPVNVTVGIENHELQSVNYILQMKVDEEVIQELNVPLKDGEVWQKNL CCCCCCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEECCHHHHHHCCCCCCCCCHHHHCC TYTRHSLKNDRSKLEFALFKEKPDYFSYRSVHLYLDNNNTFTHLVDEKYTDASSLPVIKN HHHHHHHHCCHHHEEEEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCCCCCCCCEEEC GEMESSEIWNFTSNTEYITGSYVSGSGVNSSLAYRISSSYNGSLFDQPGQSGEISQNITC CCCCCHHEEEECCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC DEDTMAVLSAYVIDNFNLTSKEDSQLKYVAVNGDTVWTDGVSEAEGWQHLEIPVSLQAGE CHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCEEEEEEEEEECCC NNLSFGLRQMPGEIVPVDVFWDRISFKPLSELSAYISETNTVETVPPTSSVLGLPAFTDN CCCCCCHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCCEEECCCCCHHEECCEECCC KTFTVSWNGTDDLSGIAYYSIDSSTDGVNWEPWISKTTDNSSSFTGKDNQTYYFRSRAVD CEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHH RAGNEEPEHPEPDTQTQIYTGAPRVMLDIFPNPCKTATTFNVTYPVPLQSAVCLVTRDGF CCCCCCCCCCCCCCCCEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEEECCC ESESCELTTSDNITWTGNYIARNGDYFRVEAVCTDVFGNTVSTLDELFVDRSISNFTIEL CCCCCEEEECCCEEECCCEEEECCCEEEEEEEEHHHHCCHHHHHHHHHHCCCCCCEEEEE TPRTINKGDLEINVTPSTTLKSKPSVSVSGSPAVNVTYLTYSDGSYYYKARIKSELNEGE ECCCCCCCCEEEEECCCCCCCCCCCEEECCCCEEEEEEEEECCCCEEEEEEEHHHCCCCC HKVSVNGYDLESEQMTGNTTFIVDHSG EEEEECCCCCCCCCCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA