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The map label for this gene is yggB [C]

Identifier: 21228193

GI number: 21228193

Start: 2495440

End: 2496612

Strand: Reverse

Name: yggB [C]

Synonym: MM_2091

Alternate gene names: 21228193

Gene position: 2496612-2495440 (Counterclockwise)

Preceding gene: 21228197

Following gene: 21228191

Centisome position: 60.95

GC content: 44.67

Gene sequence:

>1173_bases
GTGAGTATTATTACAGCAGCAGTTACTCTTTTTCTGATTTTTGCAGTTGACCGCTTGCTTGCGAAAACAAAACTTACCTT
TGCCGACGTCAAATTTGCAAAGCAGCTGATCCAGTTTATCATCCTCAGCATTGGCCTTATTCTGGTCGTGTTCAGTCTCC
CGATTGCAGGAGAGTACAAGGAATCTATTCTCGGCCTGCTCGGTATCATCACCGGTGCTGCAGTTGCGCTGTCCTCCACG
ACTTTTATTGCCAATGCGATGTCCGGGATCATGCTAAGAATTATAAAGCCTTTCCGGATTGGGGATTACATTGAAAGTGA
GAACATCTTCGGGAGAGTTACCGACATCCATATTCTTCACACCGAAATCCAGTCGATAGACAGGGACCTGGTAACTTTCC
CAAACCTCAAACTGGTCTCTAATTCTTTAAAAACAATCAGGACTTCAGGCACCGTAATCTCTACCTGCGTTTCCCTGGGT
TATGATGTCCCCCGCCAGAAGATAGAAAAAAACCTGCTCCTTGCCGCAGAAAAAGCCGGACTTGAAACTCCCTTCGTGCA
CATTCTGGAGCTTGGAGACTTTTCAGTCACATACAAGGTTGGGGGGCTTTTAAAGAATGTGGAAAACCTGATAACAGCCC
GTTCTGATTTTAAAAAGGCTGTCCTTGATTCCCTTCATGAAGACCGCATCGAAATCGTCTCACCCACTTTCATGAACCAG
AGAGTCCTGAAAGAAGGGGCTATCTTCATTCCTCCTGAAGAGCCTGCAGAAGTCGGAAAAACGGAAAAGTTCCCCGAAAA
GAAACCAGAAGAAGTAATTTTTGATAAAGCGATAGAAGCTGAGATCCTGGGAAAGATCGGGTATCTCCTGGAATTACTGG
AAAAGAAGGGAAAAGAACTTGAACAGCAGGTCAGCAGCATACCTGAAGAAGATGGAAAAGCCGATTTAAAGACAAAACTG
GAGTTCCTGAAAGACAAAACAGGAGAAATAAAAGCCGAACTCGAAGTACTGAAAAAACAGATCGAAGAAACAGAAGAAAA
ACCCGAGCCTGAAATACGTTTAAGGCAGCTCCAGAGCCTTAACCTGAGAACCGACCGCCTGGACATCCGACGGAAAAAAC
TGGAAGAAGAACTTGAAAGAATTCTGGAAAAGGGGGAAGCAAAAAAAGCTTGA

Upstream 100 bases:

>100_bases
GAAAAGAACAGCTGGATAAAGTCATAAAGATAGTGAGAAAAGGCAATATTAAGGGGGAGAAAAGCTGAGCTATTTATCCT
GGATCTTTGGGGATTATCTG

Downstream 100 bases:

>100_bases
AGGAGTTCAGAGTTTAAAAAAGCTTGATAAATACAGTCCAGGATCACTCATCGATGGTATAGTTATTATCGCTTTTTTTT
ACTTCCTTCATCAGTACTCC

Product: putative transport channel protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 389

Protein sequence:

>390_residues
MSIITAAVTLFLIFAVDRLLAKTKLTFADVKFAKQLIQFIILSIGLILVVFSLPIAGEYKESILGLLGIITGAAVALSST
TFIANAMSGIMLRIIKPFRIGDYIESENIFGRVTDIHILHTEIQSIDRDLVTFPNLKLVSNSLKTIRTSGTVISTCVSLG
YDVPRQKIEKNLLLAAEKAGLETPFVHILELGDFSVTYKVGGLLKNVENLITARSDFKKAVLDSLHEDRIEIVSPTFMNQ
RVLKEGAIFIPPEEPAEVGKTEKFPEKKPEEVIFDKAIEAEILGKIGYLLELLEKKGKELEQQVSSIPEEDGKADLKTKL
EFLKDKTGEIKAELEVLKKQIEETEEKPEPEIRLRQLQSLNLRTDRLDIRRKKLEEELERILEKGEAKKA

Sequences:

>Translated_390_residues
MSIITAAVTLFLIFAVDRLLAKTKLTFADVKFAKQLIQFIILSIGLILVVFSLPIAGEYKESILGLLGIITGAAVALSST
TFIANAMSGIMLRIIKPFRIGDYIESENIFGRVTDIHILHTEIQSIDRDLVTFPNLKLVSNSLKTIRTSGTVISTCVSLG
YDVPRQKIEKNLLLAAEKAGLETPFVHILELGDFSVTYKVGGLLKNVENLITARSDFKKAVLDSLHEDRIEIVSPTFMNQ
RVLKEGAIFIPPEEPAEVGKTEKFPEKKPEEVIFDKAIEAEILGKIGYLLELLEKKGKELEQQVSSIPEEDGKADLKTKL
EFLKDKTGEIKAELEVLKKQIEETEEKPEPEIRLRQLQSLNLRTDRLDIRRKKLEEELERILEKGEAKKA
>Mature_389_residues
SIITAAVTLFLIFAVDRLLAKTKLTFADVKFAKQLIQFIILSIGLILVVFSLPIAGEYKESILGLLGIITGAAVALSSTT
FIANAMSGIMLRIIKPFRIGDYIESENIFGRVTDIHILHTEIQSIDRDLVTFPNLKLVSNSLKTIRTSGTVISTCVSLGY
DVPRQKIEKNLLLAAEKAGLETPFVHILELGDFSVTYKVGGLLKNVENLITARSDFKKAVLDSLHEDRIEIVSPTFMNQR
VLKEGAIFIPPEEPAEVGKTEKFPEKKPEEVIFDKAIEAEILGKIGYLLELLEKKGKELEQQVSSIPEEDGKADLKTKLE
FLKDKTGEIKAELEVLKKQIEETEEKPEPEIRLRQLQSLNLRTDRLDIRRKKLEEELERILEKGEAKKA

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014
- InterPro:   IPR008910 [H]

Pfam domain/function: PF00924 MS_channel; PF05552 TM_helix [H]

EC number: NA

Molecular weight: Translated: 43723; Mature: 43592

Theoretical pI: Translated: 5.65; Mature: 5.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIITAAVTLFLIFAVDRLLAKTKLTFADVKFAKQLIQFIILSIGLILVVFSLPIAGEYK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
ESILGLLGIITGAAVALSSTTFIANAMSGIMLRIIKPFRIGDYIESENIFGRVTDIHILH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCEEHHHHHHHH
TEIQSIDRDLVTFPNLKLVSNSLKTIRTSGTVISTCVSLGYDVPRQKIEKNLLLAAEKAG
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
LETPFVHILELGDFSVTYKVGGLLKNVENLITARSDFKKAVLDSLHEDRIEIVSPTFMNQ
CCCCHHHHEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHH
RVLKEGAIFIPPEEPAEVGKTEKFPEKKPEEVIFDKAIEAEILGKIGYLLELLEKKGKEL
HHHHCCCEECCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQQVSSIPEEDGKADLKTKLEFLKDKTGEIKAELEVLKKQIEETEEKPEPEIRLRQLQSL
HHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
NLRTDRLDIRRKKLEEELERILEKGEAKKA
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SIITAAVTLFLIFAVDRLLAKTKLTFADVKFAKQLIQFIILSIGLILVVFSLPIAGEYK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
ESILGLLGIITGAAVALSSTTFIANAMSGIMLRIIKPFRIGDYIESENIFGRVTDIHILH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCEEHHHHHHHH
TEIQSIDRDLVTFPNLKLVSNSLKTIRTSGTVISTCVSLGYDVPRQKIEKNLLLAAEKAG
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
LETPFVHILELGDFSVTYKVGGLLKNVENLITARSDFKKAVLDSLHEDRIEIVSPTFMNQ
CCCCHHHHEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHH
RVLKEGAIFIPPEEPAEVGKTEKFPEKKPEEVIFDKAIEAEILGKIGYLLELLEKKGKEL
HHHHCCCEECCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQQVSSIPEEDGKADLKTKLEFLKDKTGEIKAELEVLKKQIEETEEKPEPEIRLRQLQSL
HHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
NLRTDRLDIRRKKLEEELERILEKGEAKKA
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12522265 [H]