| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227975
Identifier: 21227975
GI number: 21227975
Start: 2225553
End: 2226770
Strand: Reverse
Name: 21227975
Synonym: MM_1873
Alternate gene names: NA
Gene position: 2226770-2225553 (Counterclockwise)
Preceding gene: 21227984
Following gene: 21227974
Centisome position: 54.36
GC content: 47.04
Gene sequence:
>1218_bases ATGAAAGTAGTCCTTGATCCCGTGCATGGTTATATCGAACTGGATGAAGTTGTTCAGGAGCTTCTGGACACCCCACAGAT ACAGCGCCTCAGGAGAGTCAGGCAGCTTGGATTTTCAAACCTTGTATATCCGGGAGCAAACCATACACGTTTTGAACACT CACTCGGAACCATGCACCTTGCCTCCATGCTGATGAAAAACCTCGACTCAATTGACGAGGATAAAAAACTGGAGATAAGG GTTGCCTCCCTTTTGCATGATGTGGGGCACGGCCCATTTTCCCATGTAACAGAGAATGTTATTTATAAATATACCCGGCG CCGGCATGACGAGATAAAGGAAATCCTGGGGAAAGGGGAAATAAAAGAAATCCTGAAAAAATACGGGATTTACCCCGGTG AACTTGCAAAGCACGTCGAAGGCGAGACATCTTTGGGGCAGATTTTAAGCAGTGAGATCGATGTGGACAGGATGGACTAC CTTGTCCGGGATGCACATTATACCGGCGTTGCTTTCGGAGTTGTGGACTACAACCGCCTGATTAACCAGATGAGTTTTCA CGAAGACAGGCTTGTTGTTGACCAGGGAGGACTCAAAGCAGCCGAATCTCTCCTGGTCTCACGCTTCTGGATGAATACCT CGGTTTATTATCACCATGTTACCAGAATATCTGAAGCCATGTGCTCAAAAGCAGTTGAGCATATGATCGAGGACGGGGAA ATGGACCCGTTCCGGCTAAGGCAGATGGACGATATAGACTTAATAGCCGCAATGCGAAGCTCAAAGGGGTATGGAGGAGA ACTTGCAAGGCGGCTCGATTCACGCAACCTCTATAAACGGGCGCTCTATACAGGGCTTGAGGATGCAGGGAAAGGAGTAC TCAAACACCGGGATAAAATAGAGAGAGCAGAGAAGGAAATCGCAGAACTTGCCGGAGTGGACCAGGAATGTGTGCTTGTG GACATCCCGAAAACCCCTGAAATGCTTGAAATGAAAGCAATGATAAAAACAGACCATAAACTAGTCTCCCTTAACGAAGC TTCGCACTTCGTATCCATATTGCAGGAGGCTCACATGGACAACTGGAGAATGGGAGTTTACTGCCCGAGGGAACACTGTG AAGCTGTGGGGAAGGCTGCAAAGGAATACTTTAACATAAAAAAAGTCACAAAACAATTCAAGCTGAGCGATCTGGAAAAT ACTAAAGTGCAGGAGTAA
Upstream 100 bases:
>100_bases ATATAGCATTCGGGCAGCAGGTGCCCTGTAATTTACATCTTAAGTAATAGCATCAAAGTAATAGATACAGCAATATATAA TGACATCTGTCTAAAGATTA
Downstream 100 bases:
>100_bases AATTTTTGTTTACCGTTACAAGGAAAGCCAGCAGGATAGAAATCACTCTCGAAGTGAAAAAACTGGGGGAAGACTACCTA TTAACCCTGACCGGCGGAAA
Product: phosphohydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 405; Mature: 405
Protein sequence:
>405_residues MKVVLDPVHGYIELDEVVQELLDTPQIQRLRRVRQLGFSNLVYPGANHTRFEHSLGTMHLASMLMKNLDSIDEDKKLEIR VASLLHDVGHGPFSHVTENVIYKYTRRRHDEIKEILGKGEIKEILKKYGIYPGELAKHVEGETSLGQILSSEIDVDRMDY LVRDAHYTGVAFGVVDYNRLINQMSFHEDRLVVDQGGLKAAESLLVSRFWMNTSVYYHHVTRISEAMCSKAVEHMIEDGE MDPFRLRQMDDIDLIAAMRSSKGYGGELARRLDSRNLYKRALYTGLEDAGKGVLKHRDKIERAEKEIAELAGVDQECVLV DIPKTPEMLEMKAMIKTDHKLVSLNEASHFVSILQEAHMDNWRMGVYCPREHCEAVGKAAKEYFNIKKVTKQFKLSDLEN TKVQE
Sequences:
>Translated_405_residues MKVVLDPVHGYIELDEVVQELLDTPQIQRLRRVRQLGFSNLVYPGANHTRFEHSLGTMHLASMLMKNLDSIDEDKKLEIR VASLLHDVGHGPFSHVTENVIYKYTRRRHDEIKEILGKGEIKEILKKYGIYPGELAKHVEGETSLGQILSSEIDVDRMDY LVRDAHYTGVAFGVVDYNRLINQMSFHEDRLVVDQGGLKAAESLLVSRFWMNTSVYYHHVTRISEAMCSKAVEHMIEDGE MDPFRLRQMDDIDLIAAMRSSKGYGGELARRLDSRNLYKRALYTGLEDAGKGVLKHRDKIERAEKEIAELAGVDQECVLV DIPKTPEMLEMKAMIKTDHKLVSLNEASHFVSILQEAHMDNWRMGVYCPREHCEAVGKAAKEYFNIKKVTKQFKLSDLEN TKVQE >Mature_405_residues MKVVLDPVHGYIELDEVVQELLDTPQIQRLRRVRQLGFSNLVYPGANHTRFEHSLGTMHLASMLMKNLDSIDEDKKLEIR VASLLHDVGHGPFSHVTENVIYKYTRRRHDEIKEILGKGEIKEILKKYGIYPGELAKHVEGETSLGQILSSEIDVDRMDY LVRDAHYTGVAFGVVDYNRLINQMSFHEDRLVVDQGGLKAAESLLVSRFWMNTSVYYHHVTRISEAMCSKAVEHMIEDGE MDPFRLRQMDDIDLIAAMRSSKGYGGELARRLDSRNLYKRALYTGLEDAGKGVLKHRDKIERAEKEIAELAGVDQECVLV DIPKTPEMLEMKAMIKTDHKLVSLNEASHFVSILQEAHMDNWRMGVYCPREHCEAVGKAAKEYFNIKKVTKQFKLSDLEN TKVQE
Specific function: Unknown
COG id: COG1078
COG function: function code R; HD superfamily phosphohydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HD domain [H]
Homologues:
Organism=Homo sapiens, GI38016914, Length=276, Percent_Identity=31.8840579710145, Blast_Score=128, Evalue=8e-30, Organism=Caenorhabditis elegans, GI17537829, Length=311, Percent_Identity=29.5819935691318, Blast_Score=99, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17537827, Length=311, Percent_Identity=29.5819935691318, Blast_Score=99, Evalue=5e-21, Organism=Drosophila melanogaster, GI221512937, Length=194, Percent_Identity=29.8969072164948, Blast_Score=66, Evalue=4e-11, Organism=Drosophila melanogaster, GI24666702, Length=194, Percent_Identity=29.8969072164948, Blast_Score=66, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003607 - InterPro: IPR006675 - InterPro: IPR011991 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46443; Mature: 46443
Theoretical pI: Translated: 6.56; Mature: 6.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVVLDPVHGYIELDEVVQELLDTPQIQRLRRVRQLGFSNLVYPGANHTRFEHSLGTMHL CCEEEECCCCCEEHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH ASMLMKNLDSIDEDKKLEIRVASLLHDVGHGPFSHVTENVIYKYTRRRHDEIKEILGKGE HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCH IKEILKKYGIYPGELAKHVEGETSLGQILSSEIDVDRMDYLVRDAHYTGVAFGVVDYNRL HHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEHHHHHHHH INQMSFHEDRLVVDQGGLKAAESLLVSRFWMNTSVYYHHVTRISEAMCSKAVEHMIEDGE HHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC MDPFRLRQMDDIDLIAAMRSSKGYGGELARRLDSRNLYKRALYTGLEDAGKGVLKHRDKI CCHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHH ERAEKEIAELAGVDQECVLVDIPKTPEMLEMKAMIKTDHKLVSLNEASHFVSILQEAHMD HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCC NWRMGVYCPREHCEAVGKAAKEYFNIKKVTKQFKLSDLENTKVQE CCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MKVVLDPVHGYIELDEVVQELLDTPQIQRLRRVRQLGFSNLVYPGANHTRFEHSLGTMHL CCEEEECCCCCEEHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH ASMLMKNLDSIDEDKKLEIRVASLLHDVGHGPFSHVTENVIYKYTRRRHDEIKEILGKGE HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCH IKEILKKYGIYPGELAKHVEGETSLGQILSSEIDVDRMDYLVRDAHYTGVAFGVVDYNRL HHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEHHHHHHHH INQMSFHEDRLVVDQGGLKAAESLLVSRFWMNTSVYYHHVTRISEAMCSKAVEHMIEDGE HHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC MDPFRLRQMDDIDLIAAMRSSKGYGGELARRLDSRNLYKRALYTGLEDAGKGVLKHRDKI CCHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHH ERAEKEIAELAGVDQECVLVDIPKTPEMLEMKAMIKTDHKLVSLNEASHFVSILQEAHMD HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCC NWRMGVYCPREHCEAVGKAAKEYFNIKKVTKQFKLSDLENTKVQE CCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]