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The map label for this gene is 21227922

Identifier: 21227922

GI number: 21227922

Start: 2172057

End: 2172614

Strand: Direct

Name: 21227922

Synonym: MM_1820

Alternate gene names: NA

Gene position: 2172057-2172614 (Clockwise)

Preceding gene: 21227921

Following gene: 21227923

Centisome position: 53.02

GC content: 41.04

Gene sequence:

>558_bases
ATGGTGAAAGCGTTGATAAGGACATTTATCGCAGTGGAGCTTGACCCTGGTTTCGGGGGGAAAATCCGCCAGGTTCAGGA
AAGGTTTTCAGAGTTTGACCTGAAGTTTGTTAACCCCGAAATTGTTCATATAACCCTGAAGTTTCTGGGCGATATTAAAG
AATCAAAGGTTCCATCCATTGCTGCAGCTCTTGATTCCATTATGTGCGAGCCTTTCGAAGCAAAAATCGGGGGTCTCGGG
GTTTTTCCTAAGCCTTCAAACCCTAAAGTCCTGTGGCTGGGAGCAGAAGGAAACTTTGAAACTCTTCACAATGATGTGGA
AACAGTACTGAAACCCTTCGGGTTCAAAGAGGACGAAAGAGGTTTTACTGCCCATGCAACTCTTGCAAGGGTAAAATCTC
TAAATAAAGATCAAAAAAATTCTTTTATAAATATCCTTAAAGAATTAAAGAATATCGAGATTGGAAGTATGCAGGTGAAC
AAAGTTCTTCTTAAAAAAAGTACTCTTACTCCTGAAGGTCCTATCTATGAGACTCTGCATACGGTATACCTTGACTGA

Upstream 100 bases:

>100_bases
CACGAGTTTACAATTCTTCAGGGTATCTATATTCCGGATCTGTTTTTTCGGAAATATAAACCCATAGAAACGTTTTTCTG
TTTCTTCTTTCTAATTTATA

Downstream 100 bases:

>100_bases
TTAACTTTTTTAGGAAATTTAACCGCCCTTTCAGCTCTGACCGGTTCTTTTCTACCTGTCAGTCTTTTTCTGTGTTCTGA
TAATTATTGTCTCATAAAAC

Product: tRNA nucleotidyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MVKALIRTFIAVELDPGFGGKIRQVQERFSEFDLKFVNPEIVHITLKFLGDIKESKVPSIAAALDSIMCEPFEAKIGGLG
VFPKPSNPKVLWLGAEGNFETLHNDVETVLKPFGFKEDERGFTAHATLARVKSLNKDQKNSFINILKELKNIEIGSMQVN
KVLLKKSTLTPEGPIYETLHTVYLD

Sequences:

>Translated_185_residues
MVKALIRTFIAVELDPGFGGKIRQVQERFSEFDLKFVNPEIVHITLKFLGDIKESKVPSIAAALDSIMCEPFEAKIGGLG
VFPKPSNPKVLWLGAEGNFETLHNDVETVLKPFGFKEDERGFTAHATLARVKSLNKDQKNSFINILKELKNIEIGSMQVN
KVLLKKSTLTPEGPIYETLHTVYLD
>Mature_185_residues
MVKALIRTFIAVELDPGFGGKIRQVQERFSEFDLKFVNPEIVHITLKFLGDIKESKVPSIAAALDSIMCEPFEAKIGGLG
VFPKPSNPKVLWLGAEGNFETLHNDVETVLKPFGFKEDERGFTAHATLARVKSLNKDQKNSFINILKELKNIEIGSMQVN
KVLLKKSTLTPEGPIYETLHTVYLD

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0097 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004175
- InterPro:   IPR014051
- InterPro:   IPR009097 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: NA

Molecular weight: Translated: 20685; Mature: 20685

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKALIRTFIAVELDPGFGGKIRQVQERFSEFDLKFVNPEIVHITLKFLGDIKESKVPSI
CHHHHHHHHHHEEECCCCCHHHHHHHHHHHHCCEEECCCEEEEEHHHHHHCHHHCCCCHH
AAALDSIMCEPFEAKIGGLGVFPKPSNPKVLWLGAEGNFETLHNDVETVLKPFGFKEDER
HHHHHHHHCCCHHHCCCCEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCC
GFTAHATLARVKSLNKDQKNSFINILKELKNIEIGSMQVNKVLLKKSTLTPEGPIYETLH
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHH
TVYLD
HHCCC
>Mature Secondary Structure
MVKALIRTFIAVELDPGFGGKIRQVQERFSEFDLKFVNPEIVHITLKFLGDIKESKVPSI
CHHHHHHHHHHEEECCCCCHHHHHHHHHHHHCCEEECCCEEEEEHHHHHHCHHHCCCCHH
AAALDSIMCEPFEAKIGGLGVFPKPSNPKVLWLGAEGNFETLHNDVETVLKPFGFKEDER
HHHHHHHHCCCHHHCCCCEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCC
GFTAHATLARVKSLNKDQKNSFINILKELKNIEIGSMQVNKVLLKKSTLTPEGPIYETLH
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHH
TVYLD
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]