| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227896
Identifier: 21227896
GI number: 21227896
Start: 2141417
End: 2143972
Strand: Direct
Name: 21227896
Synonym: MM_1794
Alternate gene names: NA
Gene position: 2141417-2143972 (Clockwise)
Preceding gene: 21227895
Following gene: 21227899
Centisome position: 52.28
GC content: 47.69
Gene sequence:
>2556_bases ATGGCACATAGAGATAATCCAGAATTTTTATCGGCAAGCACTATAAAAGGGGACAAGGTCGTCAATACTGCTGGAGAAGA CCTTGGAAAGATTGAAGAATTGATGATCGACGTCGATGACGGAAGAATAGCGTATGCGGCATTGTCTTTTGGCGGGTTCC TGGGTATGGGAAACAAACTATTTGCCATTCCCTGGCAGGCTTTAAAACTCAGGCTTCACGAACATACCTTCTTACTTGAT ATTCCTAAAGAAACACTTGAGAGAGCGGAAGGCTTTGATAAGGACAACTGGCCTGCAGCTGACCGTGAATGGCTCTCCGA TACTTACACTTACTACGGATACCAGCCATACTGGCAAAGAAGGGCAGAGGAGCAGACCGAAATACGGGGCGAGGTAGGTG CAGAAAGGTTATCAAGAGAATCAGCCAGCGAGAACCCCATATTCCTGTCAGCAGATTCCATAAAAGGAAATAAAGTTGTC AATAGGGATGGGAATGATATTGGAAAGATCGACGAAATAATGATCGATCTGCAGGATGGAAATGTGGCATATGCCGCAGT ATCACATGGCGGGATCCTTGGTATAGGCAGCAAATTGTTTGCTATTCCCTGGAAGGCTTTTTCCCTTAGAATCCGTGATA ATGCCTTCATACTTGACATTCCTGAAGAGACCTTTGATAAGGCAGAAGGTTTCGACAAGAGTCACTGGCCTCTAACCCGT CAGGAACTTTCCGGGACTTTCACGCACTATGGGTTTGAACCTTACTGGCAGGCAGCGGCAGTGGGGGCAGGCGTTTCGGC AGGAGTCATGGGTGAGACTGAAGCAGAAAAGATGTCCCGGATGGAAAGAGAGAGGAAAGGGTTGGTAAAAACAGATGAAG AGTTAAAGGCAAGACAGGAAAGGGAAAGACTTGAAGGGTTAAAAGAGACGCAGGAAGAAAAAATCTCCCGTCTGGAACAG GAACGTATGGAACGGGAGAGGCAGACAGAAACTGAACGAGAAAGACTCTCGCGCCTGGAAAAAGAACAGATGGAACTTGA AAATCAGTCACGGGTTGAGAAAGAGAAGCTTGCAGGGCTGGAAAAAGAACTTCAGGAATCTATCAGGCTCGAAGAGACTG AAAAAGTATCCAGGCTTGAGAAAGAGGTGAATCTTTTACAGGGGCAGGAACAGTCCCGCAGAGAGAGACTGGCACAGCTG GAGAGTGAGCGTGCAAGAGTGGGGAAGCTGGAAGAGACCGAAAAAGAGAGGCTCGCCAGGCTTGAAAAAGAGAGGATGGA AGCCGAGAGGCGTGAAGAAAGTGAGAAAGAACGGCTTGCCCGCCTGGAAAAGGAGAGGATGGAAGCTGAAAGAAAAGTAG AGACCGAGCAGGAGAGGCTTGCCAGGCTTGAAAAAGAGAGAACGGAAGCAGAAAAGCGCCATGAGACCGAGAAGGAAAGG CTTGCCGGGTTAGGAACAGGGGGTGTAATGGCAGCAAAAGGAGCGGAAACAGGATATGCAAAAATGGCAAGGACTGAAGG AATAGCAGGAAGGGAAGGCCCTGAATTCTTATCGGCAAGCACTATAAAAGGGAACAAGGTTGTCAATACAGCCGGCGAGG ACCTTGGAAAGATAGAAGAATTAATGATCGACCTTGATGAAGGAAGAATAGGATATGCTGTACTGTCTTTTGGCGGATTC CTCGGTCTGGGCGACAAGTTATTTTCTATTCCCTGGAACTCTCTATCATTGAGAGTACACGAGCATTCCTTCGTACTTGA CGTTCCTAAAGAAACACTTGAAAAAGCAGAAGGTTTTGATAAGGACAACTGGCCTGTAACTACCCGTGAGAGTCTCTCGC AGACCTACAATTACTACGGACACGAACCTTACTGGCAGAGAGAGGCGACTGAAAGGACAGGGCTTCCCGGAGAGATAGGC TCAGAAAGGGTTTCCGGAAAAGATGTTACAGCGGGCAGAGAAAGTCCGGAATTCCTTTCAGCAGGCACTATCAAAGGGGA TAAAGTCATCAATACGGAAGGGGAGGACCTTGGAAAGATTGAAGAATTGATGATCGACCTTGATGATGGAAGAGTGGGAT ATGCTGTACTGTCCTTTGGCGGATTCCTTGGCATGGGAGACAAACTGTTTGCCATCCCCTGGAAGGCACTTTCTTTGAAG GTTCACGAACACGCCTTTGTCCTTAATATTCCTAAAGATGTCCTGAAGGATGCAGAAGGCTTTGATAAGGACAGATGGCC CTTAACCCGTGACAGCCTATTCAGGACCTATACCTACTATGGATACCAGCCGTACTGGCAGAAAAGAGAAACGGCTGAAG TAACCGGAGTGACAGGGGAGACTGCCGAAAGTCCCAGGGAAAGAGAGCCGGCAAGAATGGAGAGACGGGCTCAAAGCGAA AGCCACGGGCAGCTAAAAACCGCAGAGGAAAAAATGGCACAGCAGGATAAAGAAAGAATTAAAAGAATGGAGGAGACCGA GACAGATAAAGAGAAACTTGAACGCCTGGAAAGGGAACGCACGGTAGCAGAAAGAAGGGAGAAGAAATATCAGTAA
Upstream 100 bases:
>100_bases AGTCTGAAAAGTCAGGATGAAGTAGATCCGATATACGTTTTATGTTTTTTTCAGAATACGTGTACTTTAGAACATCTTTT TAATTTAGGGAGTTGGAACT
Downstream 100 bases:
>100_bases TAAAGGATCCGGGGAGGCATTATCTATCTCCCTGAATTCAATTTTTTCTATCTTTTTTTCTTTTTTACATTTTACCGGTC ATGTTTTCTGGAATATACTT
Product: hypothetical protein
Products: NA
Alternate protein names: PRC-Barrel Domain Protein; PRC-Barrel; Antigen
Number of amino acids: Translated: 851; Mature: 850
Protein sequence:
>851_residues MAHRDNPEFLSASTIKGDKVVNTAGEDLGKIEELMIDVDDGRIAYAALSFGGFLGMGNKLFAIPWQALKLRLHEHTFLLD IPKETLERAEGFDKDNWPAADREWLSDTYTYYGYQPYWQRRAEEQTEIRGEVGAERLSRESASENPIFLSADSIKGNKVV NRDGNDIGKIDEIMIDLQDGNVAYAAVSHGGILGIGSKLFAIPWKAFSLRIRDNAFILDIPEETFDKAEGFDKSHWPLTR QELSGTFTHYGFEPYWQAAAVGAGVSAGVMGETEAEKMSRMERERKGLVKTDEELKARQERERLEGLKETQEEKISRLEQ ERMERERQTETERERLSRLEKEQMELENQSRVEKEKLAGLEKELQESIRLEETEKVSRLEKEVNLLQGQEQSRRERLAQL ESERARVGKLEETEKERLARLEKERMEAERREESEKERLARLEKERMEAERKVETEQERLARLEKERTEAEKRHETEKER LAGLGTGGVMAAKGAETGYAKMARTEGIAGREGPEFLSASTIKGNKVVNTAGEDLGKIEELMIDLDEGRIGYAVLSFGGF LGLGDKLFSIPWNSLSLRVHEHSFVLDVPKETLEKAEGFDKDNWPVTTRESLSQTYNYYGHEPYWQREATERTGLPGEIG SERVSGKDVTAGRESPEFLSAGTIKGDKVINTEGEDLGKIEELMIDLDDGRVGYAVLSFGGFLGMGDKLFAIPWKALSLK VHEHAFVLNIPKDVLKDAEGFDKDRWPLTRDSLFRTYTYYGYQPYWQKRETAEVTGVTGETAESPREREPARMERRAQSE SHGQLKTAEEKMAQQDKERIKRMEETETDKEKLERLERERTVAERREKKYQ
Sequences:
>Translated_851_residues MAHRDNPEFLSASTIKGDKVVNTAGEDLGKIEELMIDVDDGRIAYAALSFGGFLGMGNKLFAIPWQALKLRLHEHTFLLD IPKETLERAEGFDKDNWPAADREWLSDTYTYYGYQPYWQRRAEEQTEIRGEVGAERLSRESASENPIFLSADSIKGNKVV NRDGNDIGKIDEIMIDLQDGNVAYAAVSHGGILGIGSKLFAIPWKAFSLRIRDNAFILDIPEETFDKAEGFDKSHWPLTR QELSGTFTHYGFEPYWQAAAVGAGVSAGVMGETEAEKMSRMERERKGLVKTDEELKARQERERLEGLKETQEEKISRLEQ ERMERERQTETERERLSRLEKEQMELENQSRVEKEKLAGLEKELQESIRLEETEKVSRLEKEVNLLQGQEQSRRERLAQL ESERARVGKLEETEKERLARLEKERMEAERREESEKERLARLEKERMEAERKVETEQERLARLEKERTEAEKRHETEKER LAGLGTGGVMAAKGAETGYAKMARTEGIAGREGPEFLSASTIKGNKVVNTAGEDLGKIEELMIDLDEGRIGYAVLSFGGF LGLGDKLFSIPWNSLSLRVHEHSFVLDVPKETLEKAEGFDKDNWPVTTRESLSQTYNYYGHEPYWQREATERTGLPGEIG SERVSGKDVTAGRESPEFLSAGTIKGDKVINTEGEDLGKIEELMIDLDDGRVGYAVLSFGGFLGMGDKLFAIPWKALSLK VHEHAFVLNIPKDVLKDAEGFDKDRWPLTRDSLFRTYTYYGYQPYWQKRETAEVTGVTGETAESPREREPARMERRAQSE SHGQLKTAEEKMAQQDKERIKRMEETETDKEKLERLERERTVAERREKKYQ >Mature_850_residues AHRDNPEFLSASTIKGDKVVNTAGEDLGKIEELMIDVDDGRIAYAALSFGGFLGMGNKLFAIPWQALKLRLHEHTFLLDI PKETLERAEGFDKDNWPAADREWLSDTYTYYGYQPYWQRRAEEQTEIRGEVGAERLSRESASENPIFLSADSIKGNKVVN RDGNDIGKIDEIMIDLQDGNVAYAAVSHGGILGIGSKLFAIPWKAFSLRIRDNAFILDIPEETFDKAEGFDKSHWPLTRQ ELSGTFTHYGFEPYWQAAAVGAGVSAGVMGETEAEKMSRMERERKGLVKTDEELKARQERERLEGLKETQEEKISRLEQE RMERERQTETERERLSRLEKEQMELENQSRVEKEKLAGLEKELQESIRLEETEKVSRLEKEVNLLQGQEQSRRERLAQLE SERARVGKLEETEKERLARLEKERMEAERREESEKERLARLEKERMEAERKVETEQERLARLEKERTEAEKRHETEKERL AGLGTGGVMAAKGAETGYAKMARTEGIAGREGPEFLSASTIKGNKVVNTAGEDLGKIEELMIDLDEGRIGYAVLSFGGFL GLGDKLFSIPWNSLSLRVHEHSFVLDVPKETLEKAEGFDKDNWPVTTRESLSQTYNYYGHEPYWQREATERTGLPGEIGS ERVSGKDVTAGRESPEFLSAGTIKGDKVINTEGEDLGKIEELMIDLDDGRVGYAVLSFGGFLGMGDKLFAIPWKALSLKV HEHAFVLNIPKDVLKDAEGFDKDRWPLTRDSLFRTYTYYGYQPYWQKRETAEVTGVTGETAESPREREPARMERRAQSES HGQLKTAEEKMAQQDKERIKRMEETETDKEKLERLERERTVAERREKKYQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 97457; Mature: 97326
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHRDNPEFLSASTIKGDKVVNTAGEDLGKIEELMIDVDDGRIAYAALSFGGFLGMGNKL CCCCCCCCCEECCCCCCCHHCCHHHHHHHHHHHHHEECCCCCEEEEHHHHHHHHCCCCCE FAIPWQALKLRLHEHTFLLDIPKETLERAEGFDKDNWPAADREWLSDTYTYYGYQPYWQR EECCHHHHHHHHHCCEEEEECCHHHHHHHCCCCCCCCCCCCHHHHHCCHHCCCCCHHHHH RAEEQTEIRGEVGAERLSRESASENPIFLSADSIKGNKVVNRDGNDIGKIDEIMIDLQDG HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEECCCCCCCCCHHHEEEEECCC NVAYAAVSHGGILGIGSKLFAIPWKAFSLRIRDNAFILDIPEETFDKAEGFDKSHWPLTR CEEEEEECCCCEEEECCCCEEECCEEEEEEEECCEEEEECCHHHHHHHCCCCCCCCCCCH QELSGTFTHYGFEPYWQAAAVGAGVSAGVMGETEAEKMSRMERERKGLVKTDEELKARQE HHHCCCHHCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH RERLEGLKETQEEKISRLEQERMERERQTETERERLSRLEKEQMELENQSRVEKEKLAGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EKELQESIRLEETEKVSRLEKEVNLLQGQEQSRRERLAQLESERARVGKLEETEKERLAR HHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH LEKERMEAERREESEKERLARLEKERMEAERKVETEQERLARLEKERTEAEKRHETEKER HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAGLGTGGVMAAKGAETGYAKMARTEGIAGREGPEFLSASTIKGNKVVNTAGEDLGKIEE HHCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCHHCCCCCCCCEEECCCHHHHHHHHH LMIDLDEGRIGYAVLSFGGFLGLGDKLFSIPWNSLSLRVHEHSFVLDVPKETLEKAEGFD HHHCCCCCCCHHHHHHHCCHHCCCCHHEECCCCCEEEEEECCEEEEECCHHHHHHHCCCC KDNWPVTTRESLSQTYNYYGHEPYWQREATERTGLPGEIGSERVSGKDVTAGRESPEFLS CCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHC AGTIKGDKVINTEGEDLGKIEELMIDLDDGRVGYAVLSFGGFLGMGDKLFAIPWKALSLK CCCCCCCEEECCCCCHHHHHHHHHEECCCCCHHHHHHHHCHHHCCCCCEEECCHHHHEEE VHEHAFVLNIPKDVLKDAEGFDKDRWPLTRDSLFRTYTYYGYQPYWQKRETAEVTGVTGE EECCEEEEECCHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHCCCCCCCEECCCCC TAESPREREPARMERRAQSESHGQLKTAEEKMAQQDKERIKRMEETETDKEKLERLERER CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH TVAERREKKYQ HHHHHHHHCCC >Mature Secondary Structure AHRDNPEFLSASTIKGDKVVNTAGEDLGKIEELMIDVDDGRIAYAALSFGGFLGMGNKL CCCCCCCCEECCCCCCCHHCCHHHHHHHHHHHHHEECCCCCEEEEHHHHHHHHCCCCCE FAIPWQALKLRLHEHTFLLDIPKETLERAEGFDKDNWPAADREWLSDTYTYYGYQPYWQR EECCHHHHHHHHHCCEEEEECCHHHHHHHCCCCCCCCCCCCHHHHHCCHHCCCCCHHHHH RAEEQTEIRGEVGAERLSRESASENPIFLSADSIKGNKVVNRDGNDIGKIDEIMIDLQDG HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEECCCCCCCCCHHHEEEEECCC NVAYAAVSHGGILGIGSKLFAIPWKAFSLRIRDNAFILDIPEETFDKAEGFDKSHWPLTR CEEEEEECCCCEEEECCCCEEECCEEEEEEEECCEEEEECCHHHHHHHCCCCCCCCCCCH QELSGTFTHYGFEPYWQAAAVGAGVSAGVMGETEAEKMSRMERERKGLVKTDEELKARQE HHHCCCHHCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH RERLEGLKETQEEKISRLEQERMERERQTETERERLSRLEKEQMELENQSRVEKEKLAGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EKELQESIRLEETEKVSRLEKEVNLLQGQEQSRRERLAQLESERARVGKLEETEKERLAR HHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH LEKERMEAERREESEKERLARLEKERMEAERKVETEQERLARLEKERTEAEKRHETEKER HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAGLGTGGVMAAKGAETGYAKMARTEGIAGREGPEFLSASTIKGNKVVNTAGEDLGKIEE HHCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCHHCCCCCCCCEEECCCHHHHHHHHH LMIDLDEGRIGYAVLSFGGFLGLGDKLFSIPWNSLSLRVHEHSFVLDVPKETLEKAEGFD HHHCCCCCCCHHHHHHHCCHHCCCCHHEECCCCCEEEEEECCEEEEECCHHHHHHHCCCC KDNWPVTTRESLSQTYNYYGHEPYWQREATERTGLPGEIGSERVSGKDVTAGRESPEFLS CCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHC AGTIKGDKVINTEGEDLGKIEELMIDLDDGRVGYAVLSFGGFLGMGDKLFAIPWKALSLK CCCCCCCEEECCCCCHHHHHHHHHEECCCCCHHHHHHHHCHHHCCCCCEEECCHHHHEEE VHEHAFVLNIPKDVLKDAEGFDKDRWPLTRDSLFRTYTYYGYQPYWQKRETAEVTGVTGE EECCEEEEECCHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHCCCCCCCEECCCCC TAESPREREPARMERRAQSESHGQLKTAEEKMAQQDKERIKRMEETETDKEKLERLERER CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH TVAERREKKYQ HHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA