| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227892
Identifier: 21227892
GI number: 21227892
Start: 2138403
End: 2139245
Strand: Direct
Name: 21227892
Synonym: MM_1790
Alternate gene names: NA
Gene position: 2138403-2139245 (Clockwise)
Preceding gene: 21227890
Following gene: 21227893
Centisome position: 52.2
GC content: 41.4
Gene sequence:
>843_bases ATGAAGTTACAGCTTGTAAATCTTCTTTTATTTTCTGAGAAAAGAAAAAATTTATTGTTATTGCTGGCAGAAGAGCCCAG GAATATTGATGAAATTCCGGATCTGCTTCAGATTTCCAGAATTTCTCTTCTTCCCCATATCAAAAAATTAAAGGAAAAGG GTTTAATTCTCCAGAACGGAGACGTATATTCCCTTTCCACCACAGGTGAGATACTGGTCAGAAAAGCCAGGCCTTTGCTG AATTCAGCCGGCATATTTGAAGACAATGATTCTTACTGGGGCTACAGGAAGCTTGATTCCATTCCTCCTCATCTGTTAAA GCGCATAGGGGACCTTAAAGGAAGCCAGCTACTCGAACCAGGGCTAACTCACGGCTTTGACCTTTTTCCTGAGCTGATAG ACAATTTTACCGATTCTTCAAAGGTTATGCTCCTTTTTTCTTTTTTTCATCCCCTGATTCCATCTTTTTCTCTGGAGCTT GCAAAAAAGAATGTTCAGGCACAACTCATCTTTAGCAGGGACTCATTTGACAGGCTTTCAGGGGATTTTCATGATACTGG AGAGAAGATCATGGCAAAGGGTAATGCTTCGATTTTTATTTACGAAGGAGGACCACTCGAAATACCTGCACTGATTGCGG TTTCGGATAATGCGTTACTTCTCGGTTTATTCAATAAAAAGGGGAGATTTGAAGGGCAGTACCTTCTTAATTTTGAGCCC CTTTCCCTTGCCTGGGGTAAAGAACTTTTTGAATATTACCGGGATCGGTCAGAGAATGTCCTTTCAATGGATTCTCCACG CCCTTTCCCTGATGCTAACGGTGGTTTATCTAACCTGAAGTAG
Upstream 100 bases:
>100_bases CCATATACTAATGATTATATCACTGTCATATTTATTTGAAATTTTCATACAATTGCATCTGCTTATTGTATGCTGATTTA CGTTAGAAGGCGCAGACCAG
Downstream 100 bases:
>100_bases AGCAAAAAGATATTACTGGTCCAGGAGCACGGGGCACCCAGCTTTAAATATCTTTTACGGCAAAAGGTCTTGCAGGTATC CGCATGAAACGAACCTCCAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 280; Mature: 280
Protein sequence:
>280_residues MKLQLVNLLLFSEKRKNLLLLLAEEPRNIDEIPDLLQISRISLLPHIKKLKEKGLILQNGDVYSLSTTGEILVRKARPLL NSAGIFEDNDSYWGYRKLDSIPPHLLKRIGDLKGSQLLEPGLTHGFDLFPELIDNFTDSSKVMLLFSFFHPLIPSFSLEL AKKNVQAQLIFSRDSFDRLSGDFHDTGEKIMAKGNASIFIYEGGPLEIPALIAVSDNALLLGLFNKKGRFEGQYLLNFEP LSLAWGKELFEYYRDRSENVLSMDSPRPFPDANGGLSNLK
Sequences:
>Translated_280_residues MKLQLVNLLLFSEKRKNLLLLLAEEPRNIDEIPDLLQISRISLLPHIKKLKEKGLILQNGDVYSLSTTGEILVRKARPLL NSAGIFEDNDSYWGYRKLDSIPPHLLKRIGDLKGSQLLEPGLTHGFDLFPELIDNFTDSSKVMLLFSFFHPLIPSFSLEL AKKNVQAQLIFSRDSFDRLSGDFHDTGEKIMAKGNASIFIYEGGPLEIPALIAVSDNALLLGLFNKKGRFEGQYLLNFEP LSLAWGKELFEYYRDRSENVLSMDSPRPFPDANGGLSNLK >Mature_280_residues MKLQLVNLLLFSEKRKNLLLLLAEEPRNIDEIPDLLQISRISLLPHIKKLKEKGLILQNGDVYSLSTTGEILVRKARPLL NSAGIFEDNDSYWGYRKLDSIPPHLLKRIGDLKGSQLLEPGLTHGFDLFPELIDNFTDSSKVMLLFSFFHPLIPSFSLEL AKKNVQAQLIFSRDSFDRLSGDFHDTGEKIMAKGNASIFIYEGGPLEIPALIAVSDNALLLGLFNKKGRFEGQYLLNFEP LSLAWGKELFEYYRDRSENVLSMDSPRPFPDANGGLSNLK
Specific function: Unknown
COG id: COG4742
COG function: function code K; Predicted transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31636; Mature: 31636
Theoretical pI: Translated: 6.38; Mature: 6.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLQLVNLLLFSEKRKNLLLLLAEEPRNIDEIPDLLQISRISLLPHIKKLKEKGLILQNG CCEEEEEHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECC DVYSLSTTGEILVRKARPLLNSAGIFEDNDSYWGYRKLDSIPPHLLKRIGDLKGSQLLEP CEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCHHHHHHHHCCCCCHHCCC GLTHGFDLFPELIDNFTDSSKVMLLFSFFHPLIPSFSLELAKKNVQAQLIFSRDSFDRLS CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEECCCCHHHHC GDFHDTGEKIMAKGNASIFIYEGGPLEIPALIAVSDNALLLGLFNKKGRFEGQYLLNFEP CCCCCCCHHHEECCCCEEEEECCCCCCCCEEEEECCCEEEEEEECCCCCCCCEEEEEECC LSLAWGKELFEYYRDRSENVLSMDSPRPFPDANGGLSNLK CHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKLQLVNLLLFSEKRKNLLLLLAEEPRNIDEIPDLLQISRISLLPHIKKLKEKGLILQNG CCEEEEEHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECC DVYSLSTTGEILVRKARPLLNSAGIFEDNDSYWGYRKLDSIPPHLLKRIGDLKGSQLLEP CEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCHHHHHHHHCCCCCHHCCC GLTHGFDLFPELIDNFTDSSKVMLLFSFFHPLIPSFSLELAKKNVQAQLIFSRDSFDRLS CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEECCCCHHHHC GDFHDTGEKIMAKGNASIFIYEGGPLEIPALIAVSDNALLLGLFNKKGRFEGQYLLNFEP CCCCCCCHHHEECCCCEEEEECCCCCCCCEEEEECCCEEEEEEECCCCCCCCEEEEEECC LSLAWGKELFEYYRDRSENVLSMDSPRPFPDANGGLSNLK CHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA