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The map label for this gene is 21227873

Identifier: 21227873

GI number: 21227873

Start: 2115291

End: 2115560

Strand: Direct

Name: 21227873

Synonym: MM_1771

Alternate gene names: NA

Gene position: 2115291-2115560 (Clockwise)

Preceding gene: 21227871

Following gene: 21227874

Centisome position: 51.64

GC content: 43.33

Gene sequence:

>270_bases
GTGGCTGATATGAAACGACTCGGTACCGTGCTGCACAGGTCAGGTGTTAGAAACCTGATTATTAGAGGGGATGAGATAAA
ACCCGATAAGGTCTCAGGTAGTCTTCCTAAGTTGAATTCGGTTGTTGTTGATAAGGCTCTGAATCGGATTGGTACAATCT
CCAGTATCTTTGGACCTGTAAACCATCCATATTTTTTAGTGAAGGGCTTTAAGCGAATTCCTGATTCTGAAACTCGGGCT
CTAGTCAATGAGAGGGTCTATATTCGGTGA

Upstream 100 bases:

>100_bases
TGCTTTTCAGTCGATAATATATTTTCTTATTTAAGACTGATAGTTTTATTCCACTCGAAGCCAGGGTATTTCTGCCCTGA
GTATAGAGGCATAACTATTC

Downstream 100 bases:

>100_bases
GATATCTGACGTTCGATAATGATTTTAATCCTTCGTTATGGTTAAACTTTAACCCGTTTATAAGTTTTTCGCTAGTCATA
GCCGCGAGTTTTCTTCTCCC

Product: H/ACA RNA-protein complex component Gar1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 88

Protein sequence:

>89_residues
MADMKRLGTVLHRSGVRNLIIRGDEIKPDKVSGSLPKLNSVVVDKALNRIGTISSIFGPVNHPYFLVKGFKRIPDSETRA
LVNERVYIR

Sequences:

>Translated_89_residues
MADMKRLGTVLHRSGVRNLIIRGDEIKPDKVSGSLPKLNSVVVDKALNRIGTISSIFGPVNHPYFLVKGFKRIPDSETRA
LVNERVYIR
>Mature_88_residues
ADMKRLGTVLHRSGVRNLIIRGDEIKPDKVSGSLPKLNSVVVDKALNRIGTISSIFGPVNHPYFLVKGFKRIPDSETRAL
VNERVYIR

Specific function: Unknown

COG id: COG3277

COG function: function code J; RNA-binding protein involved in rRNA processing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9972; Mature: 9841

Theoretical pI: Translated: 11.14; Mature: 11.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADMKRLGTVLHRSGVRNLIIRGDEIKPDKVSGSLPKLNSVVVDKALNRIGTISSIFGPV
CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
NHPYFLVKGFKRIPDSETRALVNERVYIR
CCCCCEEEHHHHCCCHHHHHHHHCCCCCC
>Mature Secondary Structure 
ADMKRLGTVLHRSGVRNLIIRGDEIKPDKVSGSLPKLNSVVVDKALNRIGTISSIFGPV
CCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
NHPYFLVKGFKRIPDSETRALVNERVYIR
CCCCCEEEHHHHCCCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA