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The map label for this gene is nirD [H]

Identifier: 21227840

GI number: 21227840

Start: 2079699

End: 2080229

Strand: Direct

Name: nirD [H]

Synonym: MM_1738

Alternate gene names: 21227840

Gene position: 2079699-2080229 (Clockwise)

Preceding gene: 21227839

Following gene: 21227841

Centisome position: 50.77

GC content: 45.01

Gene sequence:

>531_bases
ATGATTGACATTGATAGTTTAAAAGATCAGCTCCGAAAAGAGGCTGCCGAGTTTTCCTGTGATATGGATCCTAATGACAG
GGAAGTTCCGGTAGTAGAACTTGATGAGACGGACAAAAGAATCCTAAACCTTATCCAGCAGGAAGTCCCCCTCGAAGTCG
AACCTTTTGCAAGATTAGGCGAGATTCTCGGGCTTCCGGAAACCGAAGTCATTGAAAGGCTTCGAGAACTTAACAGGAAA
GGGGCGGTAAGAAGGGTAGGTCCTGTCCTCAACACGAGAAATATGGGGGGCGTAAGTACTCTTGTAGCCCTGAAAGTCCC
CGAGTCCCGCATAGAGGAAATTGCTATTTTTTTAACGAATATCCCGAAGTTTCCCATAATTATCTCAGAAGTGCTGCACA
GTATAATCTCTGGTTTACGCTTTCGGCTCCAGATAAAAACAGGCTTGAGGAGATTCTCAGTGAAATTCGGGAGAAAACAG
GCTGTCCTCTTCTTGATCTTCCTACCAAGCACCTGTTTAAGATTCAGGTAA

Upstream 100 bases:

>100_bases
GTGCAGGCTGCCGGGCAAGAGCCTATGCTGCCACGGGTGACTATCTCGAAGAAGAGCCTTACTGCATATACAGGCCCGGA
AAAAAGTGATAGTGATCGAG

Downstream 100 bases:

>100_bases
AGTTTGATATCAGGTGAAATTATGGATAAAACGGATGTAAAACTGTTAAAACTGGTGCAGGACGGAATTCCTATCACTCA
TTCCCCTTTCAAAGGATTTG

Product: Heme biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MIDIDSLKDQLRKEAAEFSCDMDPNDREVPVVELDETDKRILNLIQQEVPLEVEPFARLGEILGLPETEVIERLRELNRK
GAVRRVGPVLNTRNMGGVSTLVALKVPESRIEEIAIFLTNIPKFPIIISEVLHSIISGLRFRLQIKTGLRRFSVKFGRKQ
AVLFLIFLPSTCLRFR

Sequences:

>Translated_176_residues
MIDIDSLKDQLRKEAAEFSCDMDPNDREVPVVELDETDKRILNLIQQEVPLEVEPFARLGEILGLPETEVIERLRELNRK
GAVRRVGPVLNTRNMGGVSTLVALKVPESRIEEIAIFLTNIPKFPIIISEVLHSIISGLRFRLQIKTGLRRFSVKFGRKQ
AVLFLIFLPSTCLRFR
>Mature_176_residues
MIDIDSLKDQLRKEAAEFSCDMDPNDREVPVVELDETDKRILNLIQQEVPLEVEPFARLGEILGLPETEVIERLRELNRK
GAVRRVGPVLNTRNMGGVSTLVALKVPESRIEEIAIFLTNIPKFPIIISEVLHSIISGLRFRLQIKTGLRRFSVKFGRKQ
AVLFLIFLPSTCLRFR

Specific function: Required for the biosynthesis of heme D1 of nitrite reductase [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011991 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20120; Mature: 20120

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDIDSLKDQLRKEAAEFSCDMDPNDREVPVVELDETDKRILNLIQQEVPLEVEPFARLG
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCCHHHHHH
EILGLPETEVIERLRELNRKGAVRRVGPVLNTRNMGGVSTLVALKVPESRIEEIAIFLTN
HHHCCCCHHHHHHHHHHHHCCCHHHHCCHHCCCCCCCHHHHEEEECCHHHHHHHHHHHHC
IPKFPIIISEVLHSIISGLRFRLQIKTGLRRFSVKFGRKQAVLFLIFLPSTCLRFR
CCCCHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHCCC
>Mature Secondary Structure
MIDIDSLKDQLRKEAAEFSCDMDPNDREVPVVELDETDKRILNLIQQEVPLEVEPFARLG
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCCHHHHHH
EILGLPETEVIERLRELNRKGAVRRVGPVLNTRNMGGVSTLVALKVPESRIEEIAIFLTN
HHHCCCCHHHHHHHHHHHHCCCHHHHCCHHCCCCCCCHHHHEEEECCHHHHHHHHHHHHC
IPKFPIIISEVLHSIISGLRFRLQIKTGLRRFSVKFGRKQAVLFLIFLPSTCLRFR
CCCCHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8982003; 10984043 [H]