| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is czcD [C]
Identifier: 21227813
GI number: 21227813
Start: 2053311
End: 2054231
Strand: Direct
Name: czcD [C]
Synonym: MM_1711
Alternate gene names: 21227813
Gene position: 2053311-2054231 (Clockwise)
Preceding gene: 21227812
Following gene: 21227814
Centisome position: 50.13
GC content: 46.25
Gene sequence:
>921_bases TTGAGGTCTGGATTCAGGAGGTGCTGTCCGGCGATACAGAGGTTTAAAAAAGTCCAGAGAATTCTTTTGATTGTACTCTT CCTGAACCTTGCAGTAGCTTTTGCTAAGATTATTTACGGGACTTTAACCAGCACCCTCAGCATGACCGCCGACGGCTACC ATTCACTTTTCGACGGGGTATCCAATATTGTGGGACTTGTGGGAAGCTTTATTGCAGCACGCCCCCCCGATAAAGAGCAC CCTTACGGGCACCAGAAATATGAAACCATAGCCTCTATTTTTATCGCCCTTCTCCTTCTTTACGTGGGAGTTGAGATTTT CAGGCATGCGCTTGACAGGTTCCTCATCCGGAGTGTACCTGAGGTAACAGCTATAAGTTTTCTTGTGATAATCGGCACAA TGTGCATTAATTACCTGGTCACCCGCTACGAATACAGGCAGGGTTTAGCCCTGAGGAGCCAGGTTCTTATTGCGGACTCC CTGCATACAAAAAGCGACATTTATGTCTCCCTGTCAGTGATATTAAGCCTGGCTGCCGTAAAGCTTGGTTTTCCCCTTCT TGACCCTCTAATCGCTGTTCTTATATCTTTTCTTATTTTCAGGGCAGGGTTCAGGATCATGAAGGAAAGTTCAAAGGTAC TTCTTGACATGTCCAGGCTTGAAGAAGACGAGATCTGTAACCTTGTTCTGGGAGTAGAAGGAGTTCTGGGCTGCCATAAG ATCAGGACTCGCGGAGGCATGGGCGATATACGGATAGATATGCATGTGCTTGTGCAGGCTGACCTTACTCTTGAAGAAGC GCACCTTATTTCCCACAGGGTAAGCAAAATGCTGAAAGCCGAATATAATGATGTTACTGATGTGGTTGTGCACCTTGAAC CTGCCTTACCCCAAGGATCATATAGCAAAAAAACCACTTAA
Upstream 100 bases:
>100_bases TGTAGCAGAATATTATAATATAAATCAACACAAGTAGTATAGAATATATAGCATCATTCTGACTTACATTATTTGATTTA TCGCTTTCTGTCCTGTTATT
Downstream 100 bases:
>100_bases GATGCATGGCTGGAAACGTTTTCGGGCAGATGTTTCGAATCACGACCTGGGGGGAGTCCCACGGCAGGGCTGTCGGAGTT GTTGTTGACGGGCTGCCTGC
Product: cobalt-zinc-cadmium resistance protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 306; Mature: 306
Protein sequence:
>306_residues MRSGFRRCCPAIQRFKKVQRILLIVLFLNLAVAFAKIIYGTLTSTLSMTADGYHSLFDGVSNIVGLVGSFIAARPPDKEH PYGHQKYETIASIFIALLLLYVGVEIFRHALDRFLIRSVPEVTAISFLVIIGTMCINYLVTRYEYRQGLALRSQVLIADS LHTKSDIYVSLSVILSLAAVKLGFPLLDPLIAVLISFLIFRAGFRIMKESSKVLLDMSRLEEDEICNLVLGVEGVLGCHK IRTRGGMGDIRIDMHVLVQADLTLEEAHLISHRVSKMLKAEYNDVTDVVVHLEPALPQGSYSKKTT
Sequences:
>Translated_306_residues MRSGFRRCCPAIQRFKKVQRILLIVLFLNLAVAFAKIIYGTLTSTLSMTADGYHSLFDGVSNIVGLVGSFIAARPPDKEH PYGHQKYETIASIFIALLLLYVGVEIFRHALDRFLIRSVPEVTAISFLVIIGTMCINYLVTRYEYRQGLALRSQVLIADS LHTKSDIYVSLSVILSLAAVKLGFPLLDPLIAVLISFLIFRAGFRIMKESSKVLLDMSRLEEDEICNLVLGVEGVLGCHK IRTRGGMGDIRIDMHVLVQADLTLEEAHLISHRVSKMLKAEYNDVTDVVVHLEPALPQGSYSKKTT >Mature_306_residues MRSGFRRCCPAIQRFKKVQRILLIVLFLNLAVAFAKIIYGTLTSTLSMTADGYHSLFDGVSNIVGLVGSFIAARPPDKEH PYGHQKYETIASIFIALLLLYVGVEIFRHALDRFLIRSVPEVTAISFLVIIGTMCINYLVTRYEYRQGLALRSQVLIADS LHTKSDIYVSLSVILSLAAVKLGFPLLDPLIAVLISFLIFRAGFRIMKESSKVLLDMSRLEEDEICNLVLGVEGVLGCHK IRTRGGMGDIRIDMHVLVQADLTLEEAHLISHRVSKMLKAEYNDVTDVVVHLEPALPQGSYSKKTT
Specific function: Unknown
COG id: COG0053
COG function: function code P; Predicted Co/Zn/Cd cation transporters
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family [H]
Homologues:
Organism=Escherichia coli, GI1790349, Length=272, Percent_Identity=28.3088235294118, Blast_Score=88, Evalue=6e-19, Organism=Saccharomyces cerevisiae, GI6325032, Length=239, Percent_Identity=25.5230125523013, Blast_Score=71, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6323831, Length=232, Percent_Identity=24.5689655172414, Blast_Score=66, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002524 [H]
Pfam domain/function: PF01545 Cation_efflux [H]
EC number: NA
Molecular weight: Translated: 34138; Mature: 34138
Theoretical pI: Translated: 8.89; Mature: 8.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSGFRRCCPAIQRFKKVQRILLIVLFLNLAVAFAKIIYGTLTSTLSMTADGYHSLFDGV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH SNIVGLVGSFIAARPPDKEHPYGHQKYETIASIFIALLLLYVGVEIFRHALDRFLIRSVP HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC EVTAISFLVIIGTMCINYLVTRYEYRQGLALRSQVLIADSLHTKSDIYVSLSVILSLAAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH KLGFPLLDPLIAVLISFLIFRAGFRIMKESSKVLLDMSRLEEDEICNLVLGVEGVLGCHK HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH IRTRGGMGDIRIDMHVLVQADLTLEEAHLISHRVSKMLKAEYNDVTDVVVHLEPALPQGS HHHCCCCCCEEEHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCC YSKKTT CCCCCC >Mature Secondary Structure MRSGFRRCCPAIQRFKKVQRILLIVLFLNLAVAFAKIIYGTLTSTLSMTADGYHSLFDGV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH SNIVGLVGSFIAARPPDKEHPYGHQKYETIASIFIALLLLYVGVEIFRHALDRFLIRSVP HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC EVTAISFLVIIGTMCINYLVTRYEYRQGLALRSQVLIADSLHTKSDIYVSLSVILSLAAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH KLGFPLLDPLIAVLISFLIFRAGFRIMKESSKVLLDMSRLEEDEICNLVLGVEGVLGCHK HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH IRTRGGMGDIRIDMHVLVQADLTLEEAHLISHRVSKMLKAEYNDVTDVVVHLEPALPQGS HHHCCCCCCEEEHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCC YSKKTT CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]