| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is hsdR [H]
Identifier: 21227763
GI number: 21227763
Start: 1985816
End: 1988569
Strand: Direct
Name: hsdR [H]
Synonym: MM_1661
Alternate gene names: 21227763
Gene position: 1985816-1988569 (Clockwise)
Preceding gene: 21227761
Following gene: 21227764
Centisome position: 48.48
GC content: 46.19
Gene sequence:
>2754_bases ATGAGCAATAACCAGACCCCGGAGCAGAAAGCCAGAAATGAAATCGATAAAAAATTAAATGATGCTGGCTGGATTGTGCA GGAAAAGAGCATGATAGACTGGAGTGCTTCCAGGGGCATTGCAGTTAAGGAGTATCTTTCCGATGTGGGGCCTGCTGACT ATGTGCTGTTTGTTGATAAAAAGCCGGCAGGAATTATTGAAGCAAAAAGGGACGAAGAAGGCCACAGATTAACCGCTGTC GAGGAACAGTCCGCCGAATATGCATCAAGCAAGCTAAAGTACCTTAACAATGACCCTCTTCCTTTTGTATACGAGAGTAC CGGGGAACTCACACGTTTCACGGATTTCCGAGACCCGAAGCCGCGGTCAAGGCCTGTTTTTTCTTTTTTCCGCCCCGAGA CCTTTGAAGAACACTTAAAAAAGAAACCACTTAGGGAAAGGCTTCTTGAGATTCCTGAACTGCGCACCGAAGGTCTTCGA GACTGCCAGGTTATGGCAATTTCAAACCTTGAAAAGTCCTTTAAGGATTACCGCCCGCGGGCTCTGATTCAGATGGCAAC AGGATCCGGAAAGACCTATACTGCCATAACCTTCATCTACAGGTTACTGAAATTTGCGGATGCCAGAAAAGTGCTTTTCC TTGTTGACACTAAAAATCTGGGTGAGCAGGCGGAACAGGAGTTCATGGCTTATGTGCCCAATGACGATAACCGCAAATTT ACTGAGCTGTATAATGTTCAGCGCCTGCGTTCAAGCTATATTTCTTCGGACAGCCAGGTATGTATTTCCACAATTCAGCG GCTTTACTCCATCCTGAAAGGCGAGGATCTGGACGAAAAAACCGAAGAGGAAAACCCTGCCGAGAGGGGCTGGCAGCTAA AGGAACCGCTTCCTGTTGTGTATAATGAAAAGGTCCCTATTGAAGAGTTCGATTTTATTGTCATAGACGAGTGCCACCGT TCAATATACAACGTGTGGCAGCAGGTTCTGGATTATTTTGATGCTTTTTTAATAGGTCTGACAGCCACACCGGATAAACG CACCTTTGGCTTTTTCAATGAAAATGTGGTGAGCGAGTACAGCCATGAAGAAGCAGTAGCAGACGGCGTGAATGTGGGCT ATGATGTGTATATAATTGAGACTGACGTTAGCAGGAACGGAGCAAACATACCTGCCCGGGAGTTTGTGGACAGACGTGAG AAGCTTACCCGCAAAAAACGCTGGGAACAGCTGGACGAAGATTTGACCTATACTTCCAGGCAGCTTGACAGGGAAGTGGT CAATCCCAGCCAGATACGGCGCGTGATACGGACATTTAAGGAGAAGCTGCCTGAAATCTTTCCCGGAAGAAAGGAAGTTC CCAAGACTCTTATTTTTGCCAAAAACGACAGCCATGCTGATGATATTATCAATATTGTGCGGGAAGAGTTTGGAGAAGGT AATGCCTTTTGCAAGAAAGTAACCTACAAAGCTGAAGAAGACCCAAAATCGATATTGTCGGCTTTTCGCAACGAATACAA TCCAAGAATAGCGGTTACTGTGGACATGATTGCAACAGGCACGGATGTTAAGCCTCTGGAATGCCTGCTCTTTATGAGGG ATGTCAAAAGCCTCAATTATTTTGAGCAGATGAAAGGCAGAGGGACACGAACCCTGGGCTTTGACGACCTGCATAAAGTG ACTCCATCGGCTGTTTCAGCCAAAACTCATTTTGTAATCGTGGACGCTATAGGTGTTACAAAAACTATGAAGACCGACAG CCGGCCTCTTGAACGTAAGAAAAATACCTCACTGAAAGACCTGCTGGCAGCAGTTACTTTCGGCGCTCAGGACGAAGACC TTTACGTTTCACTGGCTAACCGGCTTGCGAGGCTGAACAGGCAGATAAATGAGAACGAAAAAGCCACTTTTACTGAAAAA GCGAATGGGAAAACTATCAATCAAACTGTAAAGGACCTGCTTAATGCATATAATCCCGATATGATCGACCTTAAAGCTGA TGAGATCAAACTGCGCGAGCCGGAAATTCAGGACACCGATGTAAAGGAAAAGGCGCAGGAGATCCTTATTGATATTGCCA GGTCCACTTTTTCCGGCGAGCTGAACGAATATATCGAAAACGTGCGCAGGGTCCATGAGCAGATAATTGATACAGTGAAC CTTGATACCCTTAAAAAAGCCGGATGGGATATGGATATACTGGCAAGGGATGAGAAGCTGATCAACGATTTTAAAGCATA TCTGGAAGCCAATAAAGACGAGATCACAGCCCTGAGAATTTTCTACAACCAGCCCTACCAGCGCAGGGAAGTAACTTTTG CGATGATAAAGGACGTGCTGGAAAAAATGAAACTGGAAAAGCCTTACCTTGCCCCTCTCGATGTATGGCAGGCTTATGAG CGGCTGGATAAGGTAAAAGGAAATTCCCCTAAAAACGAACTCACTGCCCTTGTCTCCTTAATCCGCAGGGTAACTGAGAT TGACCCTGTGCTGACCTCGTACGACCAGACCGTGAACCGCAACTTCCAGGACTGGGTGTTCAAAAAGCAGGCTGGAACCC TGAAATTCAATGAAGACCAGATGAACTGGCTCAGAATGATAAAAGATTATGTTGCAACCAGCTTCCATCTGGAAATCGAT GACCTTGACTACCATCCCTTTGATATCCTTGGCGGGCGCGGCAGGATGTACCAGCTTTTCGGGGACGAGATGAATACGGT TATCATTGAATTGAATGAAGCGCTGGCGGTGTGA
Upstream 100 bases:
>100_bases TGGTTATAGTGAAAGAGTTCCAGCCCGGCATTCCAATCGAGTACCAGGATGAATAGACTACTGGTAAAGAAACGAATCGC AATCAAAGACAGGTAAAGAT
Downstream 100 bases:
>100_bases TTTCTATAGAAAGGCCGGGCGATGCCAGTTTGTGACCGTCAAACACTTTACACCTATTTCCCATTGTTTGTTTTTATTTC CCATTGACTGATCGGCAGAG
Product: type I restriction-modification system restriction subunit
Products: NA
Alternate protein names: R.EcoKI [H]
Number of amino acids: Translated: 917; Mature: 916
Protein sequence:
>917_residues MSNNQTPEQKARNEIDKKLNDAGWIVQEKSMIDWSASRGIAVKEYLSDVGPADYVLFVDKKPAGIIEAKRDEEGHRLTAV EEQSAEYASSKLKYLNNDPLPFVYESTGELTRFTDFRDPKPRSRPVFSFFRPETFEEHLKKKPLRERLLEIPELRTEGLR DCQVMAISNLEKSFKDYRPRALIQMATGSGKTYTAITFIYRLLKFADARKVLFLVDTKNLGEQAEQEFMAYVPNDDNRKF TELYNVQRLRSSYISSDSQVCISTIQRLYSILKGEDLDEKTEEENPAERGWQLKEPLPVVYNEKVPIEEFDFIVIDECHR SIYNVWQQVLDYFDAFLIGLTATPDKRTFGFFNENVVSEYSHEEAVADGVNVGYDVYIIETDVSRNGANIPAREFVDRRE KLTRKKRWEQLDEDLTYTSRQLDREVVNPSQIRRVIRTFKEKLPEIFPGRKEVPKTLIFAKNDSHADDIINIVREEFGEG NAFCKKVTYKAEEDPKSILSAFRNEYNPRIAVTVDMIATGTDVKPLECLLFMRDVKSLNYFEQMKGRGTRTLGFDDLHKV TPSAVSAKTHFVIVDAIGVTKTMKTDSRPLERKKNTSLKDLLAAVTFGAQDEDLYVSLANRLARLNRQINENEKATFTEK ANGKTINQTVKDLLNAYNPDMIDLKADEIKLREPEIQDTDVKEKAQEILIDIARSTFSGELNEYIENVRRVHEQIIDTVN LDTLKKAGWDMDILARDEKLINDFKAYLEANKDEITALRIFYNQPYQRREVTFAMIKDVLEKMKLEKPYLAPLDVWQAYE RLDKVKGNSPKNELTALVSLIRRVTEIDPVLTSYDQTVNRNFQDWVFKKQAGTLKFNEDQMNWLRMIKDYVATSFHLEID DLDYHPFDILGGRGRMYQLFGDEMNTVIIELNEALAV
Sequences:
>Translated_917_residues MSNNQTPEQKARNEIDKKLNDAGWIVQEKSMIDWSASRGIAVKEYLSDVGPADYVLFVDKKPAGIIEAKRDEEGHRLTAV EEQSAEYASSKLKYLNNDPLPFVYESTGELTRFTDFRDPKPRSRPVFSFFRPETFEEHLKKKPLRERLLEIPELRTEGLR DCQVMAISNLEKSFKDYRPRALIQMATGSGKTYTAITFIYRLLKFADARKVLFLVDTKNLGEQAEQEFMAYVPNDDNRKF TELYNVQRLRSSYISSDSQVCISTIQRLYSILKGEDLDEKTEEENPAERGWQLKEPLPVVYNEKVPIEEFDFIVIDECHR SIYNVWQQVLDYFDAFLIGLTATPDKRTFGFFNENVVSEYSHEEAVADGVNVGYDVYIIETDVSRNGANIPAREFVDRRE KLTRKKRWEQLDEDLTYTSRQLDREVVNPSQIRRVIRTFKEKLPEIFPGRKEVPKTLIFAKNDSHADDIINIVREEFGEG NAFCKKVTYKAEEDPKSILSAFRNEYNPRIAVTVDMIATGTDVKPLECLLFMRDVKSLNYFEQMKGRGTRTLGFDDLHKV TPSAVSAKTHFVIVDAIGVTKTMKTDSRPLERKKNTSLKDLLAAVTFGAQDEDLYVSLANRLARLNRQINENEKATFTEK ANGKTINQTVKDLLNAYNPDMIDLKADEIKLREPEIQDTDVKEKAQEILIDIARSTFSGELNEYIENVRRVHEQIIDTVN LDTLKKAGWDMDILARDEKLINDFKAYLEANKDEITALRIFYNQPYQRREVTFAMIKDVLEKMKLEKPYLAPLDVWQAYE RLDKVKGNSPKNELTALVSLIRRVTEIDPVLTSYDQTVNRNFQDWVFKKQAGTLKFNEDQMNWLRMIKDYVATSFHLEID DLDYHPFDILGGRGRMYQLFGDEMNTVIIELNEALAV >Mature_916_residues SNNQTPEQKARNEIDKKLNDAGWIVQEKSMIDWSASRGIAVKEYLSDVGPADYVLFVDKKPAGIIEAKRDEEGHRLTAVE EQSAEYASSKLKYLNNDPLPFVYESTGELTRFTDFRDPKPRSRPVFSFFRPETFEEHLKKKPLRERLLEIPELRTEGLRD CQVMAISNLEKSFKDYRPRALIQMATGSGKTYTAITFIYRLLKFADARKVLFLVDTKNLGEQAEQEFMAYVPNDDNRKFT ELYNVQRLRSSYISSDSQVCISTIQRLYSILKGEDLDEKTEEENPAERGWQLKEPLPVVYNEKVPIEEFDFIVIDECHRS IYNVWQQVLDYFDAFLIGLTATPDKRTFGFFNENVVSEYSHEEAVADGVNVGYDVYIIETDVSRNGANIPAREFVDRREK LTRKKRWEQLDEDLTYTSRQLDREVVNPSQIRRVIRTFKEKLPEIFPGRKEVPKTLIFAKNDSHADDIINIVREEFGEGN AFCKKVTYKAEEDPKSILSAFRNEYNPRIAVTVDMIATGTDVKPLECLLFMRDVKSLNYFEQMKGRGTRTLGFDDLHKVT PSAVSAKTHFVIVDAIGVTKTMKTDSRPLERKKNTSLKDLLAAVTFGAQDEDLYVSLANRLARLNRQINENEKATFTEKA NGKTINQTVKDLLNAYNPDMIDLKADEIKLREPEIQDTDVKEKAQEILIDIARSTFSGELNEYIENVRRVHEQIIDTVNL DTLKKAGWDMDILARDEKLINDFKAYLEANKDEITALRIFYNQPYQRREVTFAMIKDVLEKMKLEKPYLAPLDVWQAYER LDKVKGNSPKNELTALVSLIRRVTEIDPVLTSYDQTVNRNFQDWVFKKQAGTLKFNEDQMNWLRMIKDYVATSFHLEIDD LDYHPFDILGGRGRMYQLFGDEMNTVIIELNEALAV
Specific function: The EcoKI enzyme recognizes 5'-AACN(6)GTGC-3'. Subunit R is required for both nuclease and ATPase activities, but not for modification [H]
COG id: COG4096
COG function: function code V; Type I site-specific restriction-modification system, R (restriction) subunit and related helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI226510991, Length=1015, Percent_Identity=24.6305418719212, Blast_Score=199, Evalue=1e-51,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR021943 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR006935 - InterPro: IPR007409 [H]
Pfam domain/function: PF12082 DUF3559; PF00271 Helicase_C; PF04313 HSDR_N; PF04851 ResIII [H]
EC number: =3.1.21.3 [H]
Molecular weight: Translated: 106251; Mature: 106119
Theoretical pI: Translated: 5.08; Mature: 5.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNNQTPEQKARNEIDKKLNDAGWIVQEKSMIDWSASRGIAVKEYLSDVGPADYVLFVDK CCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECC KPAGIIEAKRDEEGHRLTAVEEQSAEYASSKLKYLNNDPLPFVYESTGELTRFTDFRDPK CCCCCEECCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEECCCCCCCC PRSRPVFSFFRPETFEEHLKKKPLRERLLEIPELRTEGLRDCQVMAISNLEKSFKDYRPR CCCCCCHHHCCCHHHHHHHHCCHHHHHHHHCHHHHHCCCCHHHHHHHHHHHHHHHHCCCC ALIQMATGSGKTYTAITFIYRLLKFADARKVLFLVDTKNLGEQAEQEFMAYVPNDDNRKF EEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHEEECCCCCCCHH TELYNVQRLRSSYISSDSQVCISTIQRLYSILKGEDLDEKTEEENPAERGWQLKEPLPVV HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHCCCCCCCCCCCE YNEKVPIEEFDFIVIDECHRSIYNVWQQVLDYFDAFLIGLTATPDKRTFGFFNENVVSEY ECCCCCHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH SHEEAVADGVNVGYDVYIIETDVSRNGANIPAREFVDRREKLTRKKRWEQLDEDLTYTSR HHHHHHHCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QLDREVVNPSQIRRVIRTFKEKLPEIFPGRKEVPKTLIFAKNDSHADDIINIVREEFGEG HHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCEEEEECCCCCHHHHHHHHHHHHCCC NAFCKKVTYKAEEDPKSILSAFRNEYNPRIAVTVDMIATGTDVKPLECLLFMRDVKSLNY CHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHH FEQMKGRGTRTLGFDDLHKVTPSAVSAKTHFVIVDAIGVTKTMKTDSRPLERKKNTSLKD HHHHCCCCCCCCCCHHHHHCCCHHHCCCEEEEEEEECCCHHHCCCCCCCHHHHCCCCHHH LLAAVTFGAQDEDLYVSLANRLARLNRQINENEKATFTEKANGKTINQTVKDLLNAYNPD HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCCC MIDLKADEIKLREPEIQDTDVKEKAQEILIDIARSTFSGELNEYIENVRRVHEQIIDTVN EEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCC LDTLKKAGWDMDILARDEKLINDFKAYLEANKDEITALRIFYNQPYQRREVTFAMIKDVL HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHH EKMKLEKPYLAPLDVWQAYERLDKVKGNSPKNELTALVSLIRRVTEIDPVLTSYDQTVNR HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NFQDWVFKKQAGTLKFNEDQMNWLRMIKDYVATSFHLEIDDLDYHPFDILGGRGRMYQLF CHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHCEEEEEECCCCCCCHHEECCCCCEEEEE GDEMNTVIIELNEALAV CCCCCEEEEEECHHHCC >Mature Secondary Structure SNNQTPEQKARNEIDKKLNDAGWIVQEKSMIDWSASRGIAVKEYLSDVGPADYVLFVDK CCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECC KPAGIIEAKRDEEGHRLTAVEEQSAEYASSKLKYLNNDPLPFVYESTGELTRFTDFRDPK CCCCCEECCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEECCCCCCCC PRSRPVFSFFRPETFEEHLKKKPLRERLLEIPELRTEGLRDCQVMAISNLEKSFKDYRPR CCCCCCHHHCCCHHHHHHHHCCHHHHHHHHCHHHHHCCCCHHHHHHHHHHHHHHHHCCCC ALIQMATGSGKTYTAITFIYRLLKFADARKVLFLVDTKNLGEQAEQEFMAYVPNDDNRKF EEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHEEECCCCCCCHH TELYNVQRLRSSYISSDSQVCISTIQRLYSILKGEDLDEKTEEENPAERGWQLKEPLPVV HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHCCCCCCCCCCCE YNEKVPIEEFDFIVIDECHRSIYNVWQQVLDYFDAFLIGLTATPDKRTFGFFNENVVSEY ECCCCCHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH SHEEAVADGVNVGYDVYIIETDVSRNGANIPAREFVDRREKLTRKKRWEQLDEDLTYTSR HHHHHHHCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QLDREVVNPSQIRRVIRTFKEKLPEIFPGRKEVPKTLIFAKNDSHADDIINIVREEFGEG HHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCEEEEECCCCCHHHHHHHHHHHHCCC NAFCKKVTYKAEEDPKSILSAFRNEYNPRIAVTVDMIATGTDVKPLECLLFMRDVKSLNY CHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHH FEQMKGRGTRTLGFDDLHKVTPSAVSAKTHFVIVDAIGVTKTMKTDSRPLERKKNTSLKD HHHHCCCCCCCCCCHHHHHCCCHHHCCCEEEEEEEECCCHHHCCCCCCCHHHHCCCCHHH LLAAVTFGAQDEDLYVSLANRLARLNRQINENEKATFTEKANGKTINQTVKDLLNAYNPD HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCCC MIDLKADEIKLREPEIQDTDVKEKAQEILIDIARSTFSGELNEYIENVRRVHEQIIDTVN EEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCC LDTLKKAGWDMDILARDEKLINDFKAYLEANKDEITALRIFYNQPYQRREVTFAMIKDVL HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHH EKMKLEKPYLAPLDVWQAYERLDKVKGNSPKNELTALVSLIRRVTEIDPVLTSYDQTVNR HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NFQDWVFKKQAGTLKFNEDQMNWLRMIKDYVATSFHLEIDDLDYHPFDILGGRGRMYQLF CHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHCEEEEEECCCCCCCHHEECCCCCEEEEE GDEMNTVIIELNEALAV CCCCCEEEEEECHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3323532; 7610040; 9278503; 1650347 [H]