| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227747
Identifier: 21227747
GI number: 21227747
Start: 1963247
End: 1964653
Strand: Direct
Name: 21227747
Synonym: MM_1645
Alternate gene names: NA
Gene position: 1963247-1964653 (Clockwise)
Preceding gene: 21227746
Following gene: 21227748
Centisome position: 47.93
GC content: 37.1
Gene sequence:
>1407_bases TTGTTTTGGTTAATATATAAGTCAGGAACCAAACCCTCAAGAATTGTTTATCCCTGCCAGAGAGTTGCTGCTACAAACCT GAGTACATTTGTAATAGTTGCAGTAGCTTCTCCACTTTATTTGTTTCTAACAAAAATTAGAGGTTTTTTCACTCAGGATT TTAAATTTAGTAGATTATCTCTGTTTACATTAATCCTGGCTTCTATATTTGGATTTGGAGTATTTTTAACTACGAATTAC TTTAATGGGCCAGTAGCCTCTCCTGTAGAATCTGGACCTGGAATAAATTCTTCCATTGAATCTGAATCTGGTCAAATTGA ATTTGCAACAATTCCGGCTGCATATGATTTACCTTCTCCTCATAGAGTTGTAACAGTTCATAATTCAAATGCTTCTACCT GGGAAGGAGAGGGAAATCCTAATAACTACATGAATCAAACTGAAATTGATAAAATGGTAGATGCTGGAATTATGGAATTG ACTGGAACAACATCTCCTCAAGAAGGATGGAGAAAGATAATTCCATATACTGCCGGGCAGTCAGTTGTAATTAAAGTGAA TTTTAATAATAACTGGCATTTTTCCTCTAATGGGTTCTATTATAATGATGATTCCAATACAAATATGCTTAATTATGCTG CAGTTGTAAATTCCGTAATAAGTGGATTGAAGTCTGCTGGTGTCCCCTCGGAAAAAATATGGATAACTGACCCATCAAGG CCTATACATGATAAATTTAGGGAAAGAATTGAAGACAAGGGAGTGCAGTACTATATAAATCAAAATTGTGAGGCATACAT TGAAGGAAGACCAAACGTTTCAGTGACCGGTTACGTTCCAGATGACTCCGTATATGCATCTACAAGCACAGCATATGATG AAAAAATAAGGCCTGCTCAAGTGTTTGCTGATGCAACTTATATAATTAATATGCCTCAGTTAAAAGGACATGGAATGAAG AGTGTTGGGAGAGTAACTTTCAGTTTGAAAAATAATTTTGGAAGTGTATATTATACTGCCGATGCTCTGGGTGATGACCC TGCACATAATGCCCAGCCGTTTGCAAAACTTTTGGCAGACATCAATAATAATCCAGTTTTTAGAGAAAAAACAAGATTAG TTGTAGGTGACGGTATAATGGGTAATCCCGATATTAATTATGGTCCACCTACGTTATGGAAGTCATTTGGAAACAAGCCT CCAGAAACACTTTTCTTTGGAGTTGACCCCGTAGCAACAGACTCGGTCATGGTAGATTATGTTAGAAGAGAAGTAGGTTC ACAGGCGACAGGTCTTGTCCAATCTTATGCCGCTGAGCTGGGATTGGGAGTTTCAGAGTCCTGGAGTGATCAAGAAAATT ATACTTACATAGACTATCACCCAATAGACCTCGATAATCAAATATGA
Upstream 100 bases:
>100_bases CCATAATTATAGCCATTCTGGAAAAATTCCTTTGAAATACAGGATAAAACATTTGTGGCACAAAATTGAATCCAGTTTTT TCTTCGTAGCTCTTGCAAGC
Downstream 100 bases:
>100_bases ACCACTTCTGAGGGAAGACTCGATGTCTTCCGTTCACTAAATTTTTTTATGTGCACTCAGCTATTCCAGGAGTTCTACCG GTTTCAGGTCACGATCAGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 468; Mature: 468
Protein sequence:
>468_residues MFWLIYKSGTKPSRIVYPCQRVAATNLSTFVIVAVASPLYLFLTKIRGFFTQDFKFSRLSLFTLILASIFGFGVFLTTNY FNGPVASPVESGPGINSSIESESGQIEFATIPAAYDLPSPHRVVTVHNSNASTWEGEGNPNNYMNQTEIDKMVDAGIMEL TGTTSPQEGWRKIIPYTAGQSVVIKVNFNNNWHFSSNGFYYNDDSNTNMLNYAAVVNSVISGLKSAGVPSEKIWITDPSR PIHDKFRERIEDKGVQYYINQNCEAYIEGRPNVSVTGYVPDDSVYASTSTAYDEKIRPAQVFADATYIINMPQLKGHGMK SVGRVTFSLKNNFGSVYYTADALGDDPAHNAQPFAKLLADINNNPVFREKTRLVVGDGIMGNPDINYGPPTLWKSFGNKP PETLFFGVDPVATDSVMVDYVRREVGSQATGLVQSYAAELGLGVSESWSDQENYTYIDYHPIDLDNQI
Sequences:
>Translated_468_residues MFWLIYKSGTKPSRIVYPCQRVAATNLSTFVIVAVASPLYLFLTKIRGFFTQDFKFSRLSLFTLILASIFGFGVFLTTNY FNGPVASPVESGPGINSSIESESGQIEFATIPAAYDLPSPHRVVTVHNSNASTWEGEGNPNNYMNQTEIDKMVDAGIMEL TGTTSPQEGWRKIIPYTAGQSVVIKVNFNNNWHFSSNGFYYNDDSNTNMLNYAAVVNSVISGLKSAGVPSEKIWITDPSR PIHDKFRERIEDKGVQYYINQNCEAYIEGRPNVSVTGYVPDDSVYASTSTAYDEKIRPAQVFADATYIINMPQLKGHGMK SVGRVTFSLKNNFGSVYYTADALGDDPAHNAQPFAKLLADINNNPVFREKTRLVVGDGIMGNPDINYGPPTLWKSFGNKP PETLFFGVDPVATDSVMVDYVRREVGSQATGLVQSYAAELGLGVSESWSDQENYTYIDYHPIDLDNQI >Mature_468_residues MFWLIYKSGTKPSRIVYPCQRVAATNLSTFVIVAVASPLYLFLTKIRGFFTQDFKFSRLSLFTLILASIFGFGVFLTTNY FNGPVASPVESGPGINSSIESESGQIEFATIPAAYDLPSPHRVVTVHNSNASTWEGEGNPNNYMNQTEIDKMVDAGIMEL TGTTSPQEGWRKIIPYTAGQSVVIKVNFNNNWHFSSNGFYYNDDSNTNMLNYAAVVNSVISGLKSAGVPSEKIWITDPSR PIHDKFRERIEDKGVQYYINQNCEAYIEGRPNVSVTGYVPDDSVYASTSTAYDEKIRPAQVFADATYIINMPQLKGHGMK SVGRVTFSLKNNFGSVYYTADALGDDPAHNAQPFAKLLADINNNPVFREKTRLVVGDGIMGNPDINYGPPTLWKSFGNKP PETLFFGVDPVATDSVMVDYVRREVGSQATGLVQSYAAELGLGVSESWSDQENYTYIDYHPIDLDNQI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51831; Mature: 51831
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFWLIYKSGTKPSRIVYPCQRVAATNLSTFVIVAVASPLYLFLTKIRGFFTQDFKFSRLS CEEEEEECCCCCCEEEHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHH LFTLILASIFGFGVFLTTNYFNGPVASPVESGPGINSSIESESGQIEFATIPAAYDLPSP HHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC HRVVTVHNSNASTWEGEGNPNNYMNQTEIDKMVDAGIMELTGTTSPQEGWRKIIPYTAGQ CEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEECCCCCHHHHHHHHCCCCCCC SVVIKVNFNNNWHFSSNGFYYNDDSNTNMLNYAAVVNSVISGLKSAGVPSEKIWITDPSR EEEEEEEECCCEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC PIHDKFRERIEDKGVQYYINQNCEAYIEGRPNVSVTGYVPDDSVYASTSTAYDEKIRPAQ CHHHHHHHHHHHCCEEEEECCCCEEEECCCCCEEEEEECCCCCEEECCCCHHHHCCCHHH VFADATYIINMPQLKGHGMKSVGRVTFSLKNNFGSVYYTADALGDDPAHNAQPFAKLLAD HEECEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHH INNNPVFREKTRLVVGDGIMGNPDINYGPPTLWKSFGNKPPETLFFGVDPVATDSVMVDY CCCCCCEEECCEEEEECCCCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCHHHHHHH VRREVGSQATGLVQSYAAELGLGVSESWSDQENYTYIDYHPIDLDNQI HHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCC >Mature Secondary Structure MFWLIYKSGTKPSRIVYPCQRVAATNLSTFVIVAVASPLYLFLTKIRGFFTQDFKFSRLS CEEEEEECCCCCCEEEHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHH LFTLILASIFGFGVFLTTNYFNGPVASPVESGPGINSSIESESGQIEFATIPAAYDLPSP HHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC HRVVTVHNSNASTWEGEGNPNNYMNQTEIDKMVDAGIMELTGTTSPQEGWRKIIPYTAGQ CEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEECCCCCHHHHHHHHCCCCCCC SVVIKVNFNNNWHFSSNGFYYNDDSNTNMLNYAAVVNSVISGLKSAGVPSEKIWITDPSR EEEEEEEECCCEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC PIHDKFRERIEDKGVQYYINQNCEAYIEGRPNVSVTGYVPDDSVYASTSTAYDEKIRPAQ CHHHHHHHHHHHCCEEEEECCCCEEEECCCCCEEEEEECCCCCEEECCCCHHHHCCCHHH VFADATYIINMPQLKGHGMKSVGRVTFSLKNNFGSVYYTADALGDDPAHNAQPFAKLLAD HEECEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHH INNNPVFREKTRLVVGDGIMGNPDINYGPPTLWKSFGNKPPETLFFGVDPVATDSVMVDY CCCCCCEEECCEEEEECCCCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCHHHHHHH VRREVGSQATGLVQSYAAELGLGVSESWSDQENYTYIDYHPIDLDNQI HHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA