| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227719
Identifier: 21227719
GI number: 21227719
Start: 1928691
End: 1929881
Strand: Direct
Name: 21227719
Synonym: MM_1617
Alternate gene names: NA
Gene position: 1928691-1929881 (Clockwise)
Preceding gene: 21227718
Following gene: 21227725
Centisome position: 47.08
GC content: 49.03
Gene sequence:
>1191_bases ATGAAATCACTGGTCTTTAACCCTTTTTCAGGTGCAGCCGGAGATATGATTCTGGGGTGTGCCCTCGACCTCGGAGCCGA CAGGGGAGAAGTAAAGGAATTAATCGAATCCTCGGCACCTGTATCTATGGATATCAGGGAGGTTGTGAAAAAAGGGATCA AAGCCCTGGACGTACGCATAAATGTGCCTGAAAAAGAGTACTTCCGGACATACCCTGAAATTGTAGACCTTGTAAAGGCG TCAAAACTGCCTTCAAAAGTAGAGGCAAGTGCCCTTGACATCTTTTTGAAAATGGCAGAAGCAGAGGCTGCGGTTCATGG GCAGCCTGACCTTGAAAAGCTTCATTTCCACGAGGTGGGGCAGAGCGATGCCCTTGCCGATGTTATAGGCTCTTCTGCGG CCATTCATTCCCTTAACTGTGATTCGGTTTACTGCACCCCTATCAATGTGGGCAGTGGAACAATAGAATGTGCGCATGGG ACCCTGCCTGTGCCGGCTCCTGCTACCCTTGAGATTCTCAGGAGAGGAAAGCTCTATTTCAGGGGAGGAAATGTGAATAA GGAACTGCTTACTCCAACAGGGGCTGCAATTCTTGCGCATTTTGCAAAGCCTGTTGACAATTTCCCTCAGGGCAGGGCAG TTGCCATAGGATACGGCGCAGGGGATGCCGAGCTCCAGGGGCCCAATGTGCTCCAGGGAGTGCTGATAGAGCCTGATTCT CATCTGGTTCCTGATATAATCGAAGTCCTTGAGACCAATGCTGACGATGTGAGTGGAGAAGTCCTGGGCAACCTCTTTGA GGAACTGCTTTCAATGGGAGCCAGGGATGTTGCGATTATGCCCGCAACCATGAAAAAAGGCAGGCCTGCCCATATTATCA AGGTTATTGCAAAGCCCGAAGACAGCGCAAAACTTGCCCGGAAAATAATAGTTGAAACAGGGTCTCTTGGAGTAAGAGTC ATGCCTGCCAGGCACAGGTTAACAGCTTCCCGAAATATTGAAAGGATAAAAATTGATCTTGAAGGTCAGGAATTTGAAAC TGCGGTCAAAATCGCCAGGGACTCGGAAGGGGTTCTTCTCAATATCTCTGCGGAATTTGAAGACTGCAAAAAAATTGCAA AAACCAGCGGAGTTCCTGTAAGAGAGGTTATGCGCAGGGCAGAAGAGGCTGCAAGGAAGCTGTTTTCCTGA
Upstream 100 bases:
>100_bases AATAACTGAAGAAACGGAACAGGAAGAAACCGGAGAGTAATAATATCTTGAAAACGACGAACGAGGACGGGTTCAAAAGT AAAATTCAGGGAGGTAATTT
Downstream 100 bases:
>100_bases ATACTGCCGGAAACCGGGAAATTTGGAAAATTACTCCAGGAGAAATAAAAATCAATCTCTGACTTTATAAAAATAAATTT AAAACAGAGATTTTTGAAGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 396; Mature: 396
Protein sequence:
>396_residues MKSLVFNPFSGAAGDMILGCALDLGADRGEVKELIESSAPVSMDIREVVKKGIKALDVRINVPEKEYFRTYPEIVDLVKA SKLPSKVEASALDIFLKMAEAEAAVHGQPDLEKLHFHEVGQSDALADVIGSSAAIHSLNCDSVYCTPINVGSGTIECAHG TLPVPAPATLEILRRGKLYFRGGNVNKELLTPTGAAILAHFAKPVDNFPQGRAVAIGYGAGDAELQGPNVLQGVLIEPDS HLVPDIIEVLETNADDVSGEVLGNLFEELLSMGARDVAIMPATMKKGRPAHIIKVIAKPEDSAKLARKIIVETGSLGVRV MPARHRLTASRNIERIKIDLEGQEFETAVKIARDSEGVLLNISAEFEDCKKIAKTSGVPVREVMRRAEEAARKLFS
Sequences:
>Translated_396_residues MKSLVFNPFSGAAGDMILGCALDLGADRGEVKELIESSAPVSMDIREVVKKGIKALDVRINVPEKEYFRTYPEIVDLVKA SKLPSKVEASALDIFLKMAEAEAAVHGQPDLEKLHFHEVGQSDALADVIGSSAAIHSLNCDSVYCTPINVGSGTIECAHG TLPVPAPATLEILRRGKLYFRGGNVNKELLTPTGAAILAHFAKPVDNFPQGRAVAIGYGAGDAELQGPNVLQGVLIEPDS HLVPDIIEVLETNADDVSGEVLGNLFEELLSMGARDVAIMPATMKKGRPAHIIKVIAKPEDSAKLARKIIVETGSLGVRV MPARHRLTASRNIERIKIDLEGQEFETAVKIARDSEGVLLNISAEFEDCKKIAKTSGVPVREVMRRAEEAARKLFS >Mature_396_residues MKSLVFNPFSGAAGDMILGCALDLGADRGEVKELIESSAPVSMDIREVVKKGIKALDVRINVPEKEYFRTYPEIVDLVKA SKLPSKVEASALDIFLKMAEAEAAVHGQPDLEKLHFHEVGQSDALADVIGSSAAIHSLNCDSVYCTPINVGSGTIECAHG TLPVPAPATLEILRRGKLYFRGGNVNKELLTPTGAAILAHFAKPVDNFPQGRAVAIGYGAGDAELQGPNVLQGVLIEPDS HLVPDIIEVLETNADDVSGEVLGNLFEELLSMGARDVAIMPATMKKGRPAHIIKVIAKPEDSAKLARKIIVETGSLGVRV MPARHRLTASRNIERIKIDLEGQEFETAVKIARDSEGVLLNISAEFEDCKKIAKTSGVPVREVMRRAEEAARKLFS
Specific function: Unknown
COG id: COG1641
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0272 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y1617_METMA (Q8PWH0)
Other databases:
- EMBL: AE008384 - RefSeq: NP_633641.1 - ProteinModelPortal: Q8PWH0 - SMR: Q8PWH0 - GeneID: 1479959 - GenomeReviews: AE008384_GR - KEGG: mma:MM_1617 - NMPDR: fig|192952.1.peg.1617 - HOGENOM: HBG733311 - OMA: IVGTCLG - ProtClustDB: PRK04194 - BioCyc: MMAZ192952:MM1617-MONOMER - HAMAP: MF_01074 - InterPro: IPR002822 - TIGRFAMs: TIGR00299
Pfam domain/function: PF01969 DUF111
EC number: NA
Molecular weight: Translated: 42553; Mature: 42553
Theoretical pI: Translated: 5.69; Mature: 5.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSLVFNPFSGAAGDMILGCALDLGADRGEVKELIESSAPVSMDIREVVKKGIKALDVRI CCCCEECCCCCCCCCEEEEEHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHCHHEEEEEE NVPEKEYFRTYPEIVDLVKASKLPSKVEASALDIFLKMAEAEAAVHGQPDLEKLHFHEVG ECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC QSDALADVIGSSAAIHSLNCDSVYCTPINVGSGTIECAHGTLPVPAPATLEILRRGKLYF CCHHHHHHHCCCCEEEECCCCCEEEEEEECCCCEEEECCCCCCCCCCHHHHHHHCCCEEE RGGNVNKELLTPTGAAILAHFAKPVDNFPQGRAVAIGYGAGDAELQGPNVLQGVLIEPDS ECCCCCHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCC HLVPDIIEVLETNADDVSGEVLGNLFEELLSMGARDVAIMPATMKKGRPAHIIKVIAKPE CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCEEEEEEEECCC DSAKLARKIIVETGSLGVRVMPARHRLTASRNIERIKIDLEGQEFETAVKIARDSEGVLL HHHHHHHHHHHCCCCCCEEEECCHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCCEEE NISAEFEDCKKIAKTSGVPVREVMRRAEEAARKLFS EEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKSLVFNPFSGAAGDMILGCALDLGADRGEVKELIESSAPVSMDIREVVKKGIKALDVRI CCCCEECCCCCCCCCEEEEEHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHCHHEEEEEE NVPEKEYFRTYPEIVDLVKASKLPSKVEASALDIFLKMAEAEAAVHGQPDLEKLHFHEVG ECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC QSDALADVIGSSAAIHSLNCDSVYCTPINVGSGTIECAHGTLPVPAPATLEILRRGKLYF CCHHHHHHHCCCCEEEECCCCCEEEEEEECCCCEEEECCCCCCCCCCHHHHHHHCCCEEE RGGNVNKELLTPTGAAILAHFAKPVDNFPQGRAVAIGYGAGDAELQGPNVLQGVLIEPDS ECCCCCHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCC HLVPDIIEVLETNADDVSGEVLGNLFEELLSMGARDVAIMPATMKKGRPAHIIKVIAKPE CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCEEEEEEEECCC DSAKLARKIIVETGSLGVRVMPARHRLTASRNIERIKIDLEGQEFETAVKIARDSEGVLL HHHHHHHHHHHCCCCCCEEEECCHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCCEEE NISAEFEDCKKIAKTSGVPVREVMRRAEEAARKLFS EEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12125824