| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227678
Identifier: 21227678
GI number: 21227678
Start: 1877840
End: 1878685
Strand: Reverse
Name: 21227678
Synonym: MM_1576
Alternate gene names: NA
Gene position: 1878685-1877840 (Counterclockwise)
Preceding gene: 21227679
Following gene: 21227676
Centisome position: 45.86
GC content: 47.16
Gene sequence:
>846_bases ATGCCAGAAATCAAAAACATACAGGAAACCGAAAAAGAAGAAAACGGAACCCTGCCTGTCCTCGTAACCGCGCTAAAAAA AGACCTTGGTCCTGCTCTTGAAGAAATCGAAGTAAAGGATGTCAGGATCGGGCTTGCTTATACTGGAGTCCTGCTTTCCG AAAACTACGGGGGCGTTGCCTGCACACCACTTTATGAGTTTTCGGGCTGTCCTGCCCTCGGTTTTGCGGGCTTTCTGAAA GGAAACTCTGCGGATAAAGTGCTCGAGTTTGCCCTGTCGAAAAACCCCTTTGAGGCAGCGGTCGGAGTTGCAACCGCGAA TGCGCTTTCTCATATGCTCCATGATCTGGAACCCAAAAAATTTCCTGTTTCAAAAACAAACATCCTTGACCTTATAAAAC CTGAAGATAAAGTTGCAATGGTAGGCTATTTTGGTCCTCTCGTCCCGAGAATTCTGAAAATAACCGAGAAACTTACGATC CTTGAGAAGCGTGAAATCGAATTTTCTGAAACCACGATACTGCCTTCGGAAAAAGCCAGAGAAATTCTCCCAGCATCGGA TGTGATCATCATCAGTGCAAGTACTCTCGCCAACAGGACTTTTGATGAGCTCCTTTCCTCCCGGGGTGCAGCAAGAGAAG TTGTCCTGCTAGGACCAAGCGCGCCTCTCTACCCTGCCCCGTTCTTCAGTAGAGGTATTACTGCAATAATGGGAACCCGG ATTATTGACCCCCTGAAAATGCTTACGGTGATTAGCGAGGCGGGAGGGACGAAAAAACTGCACCAGTTCTGTGGGGAAAA GGTAGCGTTCCAGAATAAAAATGAAGACAGAAATAAGTCCTCTTGA
Upstream 100 bases:
>100_bases TTGTTGATATTATTGTCATAAGTGCTCCCTATTACGCAAATCCTCTTGACTTTACAACGAAGATCGAAAGGCTGTAAGCT GATAAATAAAAGGTGAACGC
Downstream 100 bases:
>100_bases GCGAAACAAAAAGGACAGTAAACTGCAGAGACGTAACTCTGCCGAAAAAGCTGAATTATCTGGGGAGAAGGTACCCTTTA GAAGAAGAAAACGAGAAGAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 281; Mature: 280
Protein sequence:
>281_residues MPEIKNIQETEKEENGTLPVLVTALKKDLGPALEEIEVKDVRIGLAYTGVLLSENYGGVACTPLYEFSGCPALGFAGFLK GNSADKVLEFALSKNPFEAAVGVATANALSHMLHDLEPKKFPVSKTNILDLIKPEDKVAMVGYFGPLVPRILKITEKLTI LEKREIEFSETTILPSEKAREILPASDVIIISASTLANRTFDELLSSRGAAREVVLLGPSAPLYPAPFFSRGITAIMGTR IIDPLKMLTVISEAGGTKKLHQFCGEKVAFQNKNEDRNKSS
Sequences:
>Translated_281_residues MPEIKNIQETEKEENGTLPVLVTALKKDLGPALEEIEVKDVRIGLAYTGVLLSENYGGVACTPLYEFSGCPALGFAGFLK GNSADKVLEFALSKNPFEAAVGVATANALSHMLHDLEPKKFPVSKTNILDLIKPEDKVAMVGYFGPLVPRILKITEKLTI LEKREIEFSETTILPSEKAREILPASDVIIISASTLANRTFDELLSSRGAAREVVLLGPSAPLYPAPFFSRGITAIMGTR IIDPLKMLTVISEAGGTKKLHQFCGEKVAFQNKNEDRNKSS >Mature_280_residues PEIKNIQETEKEENGTLPVLVTALKKDLGPALEEIEVKDVRIGLAYTGVLLSENYGGVACTPLYEFSGCPALGFAGFLKG NSADKVLEFALSKNPFEAAVGVATANALSHMLHDLEPKKFPVSKTNILDLIKPEDKVAMVGYFGPLVPRILKITEKLTIL EKREIEFSETTILPSEKAREILPASDVIIISASTLANRTFDELLSSRGAAREVVLLGPSAPLYPAPFFSRGITAIMGTRI IDPLKMLTVISEAGGTKKLHQFCGEKVAFQNKNEDRNKSS
Specific function: Unknown
COG id: COG2014
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007161 [H]
Pfam domain/function: PF04016 DUF364 [H]
EC number: NA
Molecular weight: Translated: 30516; Mature: 30385
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEIKNIQETEKEENGTLPVLVTALKKDLGPALEEIEVKDVRIGLAYTGVLLSENYGGVA CCCCCCCHHHHHHCCCCHHHHHHHHHHHHCHHHHHCCHHHEEEEEEEEEEEEECCCCCEE CTPLYEFSGCPALGFAGFLKGNSADKVLEFALSKNPFEAAVGVATANALSHMLHDLEPKK EEEEHHCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC FPVSKTNILDLIKPEDKVAMVGYFGPLVPRILKITEKLTILEKREIEFSETTILPSEKAR CCCCHHHHHEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCHHHH EILPASDVIIISASTLANRTFDELLSSRGAAREVVLLGPSAPLYPAPFFSRGITAIMGTR HHCCCCCEEEEECHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH IIDPLKMLTVISEAGGTKKLHQFCGEKVAFQNKNEDRNKSS HHHHHHHHHHHHHCCCHHHHHHHCCCHHCCCCCCCCCCCCC >Mature Secondary Structure PEIKNIQETEKEENGTLPVLVTALKKDLGPALEEIEVKDVRIGLAYTGVLLSENYGGVA CCCCCCHHHHHHCCCCHHHHHHHHHHHHCHHHHHCCHHHEEEEEEEEEEEEECCCCCEE CTPLYEFSGCPALGFAGFLKGNSADKVLEFALSKNPFEAAVGVATANALSHMLHDLEPKK EEEEHHCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC FPVSKTNILDLIKPEDKVAMVGYFGPLVPRILKITEKLTILEKREIEFSETTILPSEKAR CCCCHHHHHEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCHHHH EILPASDVIIISASTLANRTFDELLSSRGAAREVVLLGPSAPLYPAPFFSRGITAIMGTR HHCCCCCEEEEECHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH IIDPLKMLTVISEAGGTKKLHQFCGEKVAFQNKNEDRNKSS HHHHHHHHHHHHHCCCHHHHHHHCCCHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]