Definition Methanosarcina mazei Go1 chromosome, complete genome.
Accession NC_003901
Length 4,096,345

Click here to switch to the map view.

The map label for this gene is 21227511

Identifier: 21227511

GI number: 21227511

Start: 1691476

End: 1692591

Strand: Direct

Name: 21227511

Synonym: MM_1409

Alternate gene names: NA

Gene position: 1691476-1692591 (Clockwise)

Preceding gene: 21227506

Following gene: 21227512

Centisome position: 41.29

GC content: 41.76

Gene sequence:

>1116_bases
TTGTTGATTCGTAAAAACGTTTCTTTAGATGAAGTTCACCTCCAGAAGCTCCAGTCCTTGCTGGAAAAGAATGGAGGTAA
TTTAAGTGCAGCAATAAGGGAAGCAATTGATCTGGTTAGCCTTTGCCCTGAAAGTTATGGAACTCAAGATGTAAGTTCTG
AAAATCCAGGAAAAAAGGAAAGTTTTCCTGGAGCAGGAGAAGAGCTTCTCAGGAATGAAGAATGTGTTATGGTAAACCAG
CAGATGATTAAGTGGCTTATCAGAAACAGTGCTGGGAAGCTTATAGATGAAGATATTGTCCATGAACTTATAAATCCCTA
CCTCATTAATACAGTCCCCGAACTGATAGAGTACCTGAACACCATCAGTAAGCAGCTTGGGTGGAAGATTGAAGTCTCGA
CTTCCTGTGGAGAAAACCTTCAAAACGGGTGTACCAGTATGGATTTCACCGGAGGGGATAGAGACATGAGGGAGTTTCTT
GTTGAGGTAGCCTGTATTTTTCTCTCGCGCTGGGCAGGTCTGGATGCCGAGGCTCTGCACAGGAGATCAAATTCAATCAC
CGTATATCTCAGACCTTTTGTTCGTCACGATATGCTCGAAGCAACTCCCGGAGTTCGGAACCTATTTGGTTCCAGAGATA
TTCTTTTCAGGGAAATTGAGAGAAAGCCTGCTTTCTGGATGACGCTTGCTGAACTTTATACTAAATTCAACTATCAGAGG
GTAAACCTGGACAAGAGCCTCTTTGAAGCCCTGTTGGCAGGGAAGCTCCCTGATATTACAAAATACTTTGAGGTTAAGGC
TGACCGTTCGCTTCGTGAAATTCCACTTCAAGAACTTCTGCCTCTTTTTAAATATCTTGTAGTAGCTTCACAGCTTGTAA
ATGATGTGGAGATATGTGCTGAAAAAGGAAAAGAGTGCATCAAAATCAGGCACGACTACTCTGAAGAAAGTGTGGTTCTA
AAGCTTATTAAGCTGTTTTCCAATTTATTCGAGGCCGGTCTGCACAGATTCAGTGTAACTTACGTATCCGGACTCATTAT
TTTTGATTTTTCTCTTCCTGAAATTTCAGTAGAGGATGTTGTAAAAATTTCTCCGGGTCTGGATTTTTACGAATAA

Upstream 100 bases:

>100_bases
TGAAAGAGATAAGTCCAGCTTTCAAAGATCCTCAGACATTTATCCTGCAGATGGAAATTTCCCCAGAACCGGCCACAATA
TAGAAAAAGTAACAGGGATT

Downstream 100 bases:

>100_bases
ATAATAATTCTTAAATATTTATAAATCGAATTTATAAGCCTGATTATACTGTTTAAGCTTATATTGTACCTGTATTGTAC
CTGTAACGCCAGACGATTTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MLIRKNVSLDEVHLQKLQSLLEKNGGNLSAAIREAIDLVSLCPESYGTQDVSSENPGKKESFPGAGEELLRNEECVMVNQ
QMIKWLIRNSAGKLIDEDIVHELINPYLINTVPELIEYLNTISKQLGWKIEVSTSCGENLQNGCTSMDFTGGDRDMREFL
VEVACIFLSRWAGLDAEALHRRSNSITVYLRPFVRHDMLEATPGVRNLFGSRDILFREIERKPAFWMTLAELYTKFNYQR
VNLDKSLFEALLAGKLPDITKYFEVKADRSLREIPLQELLPLFKYLVVASQLVNDVEICAEKGKECIKIRHDYSEESVVL
KLIKLFSNLFEAGLHRFSVTYVSGLIIFDFSLPEISVEDVVKISPGLDFYE

Sequences:

>Translated_371_residues
MLIRKNVSLDEVHLQKLQSLLEKNGGNLSAAIREAIDLVSLCPESYGTQDVSSENPGKKESFPGAGEELLRNEECVMVNQ
QMIKWLIRNSAGKLIDEDIVHELINPYLINTVPELIEYLNTISKQLGWKIEVSTSCGENLQNGCTSMDFTGGDRDMREFL
VEVACIFLSRWAGLDAEALHRRSNSITVYLRPFVRHDMLEATPGVRNLFGSRDILFREIERKPAFWMTLAELYTKFNYQR
VNLDKSLFEALLAGKLPDITKYFEVKADRSLREIPLQELLPLFKYLVVASQLVNDVEICAEKGKECIKIRHDYSEESVVL
KLIKLFSNLFEAGLHRFSVTYVSGLIIFDFSLPEISVEDVVKISPGLDFYE
>Mature_371_residues
MLIRKNVSLDEVHLQKLQSLLEKNGGNLSAAIREAIDLVSLCPESYGTQDVSSENPGKKESFPGAGEELLRNEECVMVNQ
QMIKWLIRNSAGKLIDEDIVHELINPYLINTVPELIEYLNTISKQLGWKIEVSTSCGENLQNGCTSMDFTGGDRDMREFL
VEVACIFLSRWAGLDAEALHRRSNSITVYLRPFVRHDMLEATPGVRNLFGSRDILFREIERKPAFWMTLAELYTKFNYQR
VNLDKSLFEALLAGKLPDITKYFEVKADRSLREIPLQELLPLFKYLVVASQLVNDVEICAEKGKECIKIRHDYSEESVVL
KLIKLFSNLFEAGLHRFSVTYVSGLIIFDFSLPEISVEDVVKISPGLDFYE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42282; Mature: 42282

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIRKNVSLDEVHLQKLQSLLEKNGGNLSAAIREAIDLVSLCPESYGTQDVSSENPGKKE
CEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCC
SFPGAGEELLRNEECVMVNQQMIKWLIRNSAGKLIDEDIVHELINPYLINTVPELIEYLN
CCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TISKQLGWKIEVSTSCGENLQNGCTSMDFTGGDRDMREFLVEVACIFLSRWAGLDAEALH
HHHHHHCCEEEECCHHCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
RRSNSITVYLRPFVRHDMLEATPGVRNLFGSRDILFREIERKPAFWMTLAELYTKFNYQR
HCCCCEEEEECHHHHHHHHHCCCCHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCE
VNLDKSLFEALLAGKLPDITKYFEVKADRSLREIPLQELLPLFKYLVVASQLVNDVEICA
ECCCHHHHHHHHHCCCCCHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
EKGKECIKIRHDYSEESVVLKLIKLFSNLFEAGLHRFSVTYVSGLIIFDFSLPEISVEDV
HCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHEEECCCCCCCHHHH
VKISPGLDFYE
HCCCCCCCCCC
>Mature Secondary Structure
MLIRKNVSLDEVHLQKLQSLLEKNGGNLSAAIREAIDLVSLCPESYGTQDVSSENPGKKE
CEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCC
SFPGAGEELLRNEECVMVNQQMIKWLIRNSAGKLIDEDIVHELINPYLINTVPELIEYLN
CCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TISKQLGWKIEVSTSCGENLQNGCTSMDFTGGDRDMREFLVEVACIFLSRWAGLDAEALH
HHHHHHCCEEEECCHHCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
RRSNSITVYLRPFVRHDMLEATPGVRNLFGSRDILFREIERKPAFWMTLAELYTKFNYQR
HCCCCEEEEECHHHHHHHHHCCCCHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCE
VNLDKSLFEALLAGKLPDITKYFEVKADRSLREIPLQELLPLFKYLVVASQLVNDVEICA
ECCCHHHHHHHHHCCCCCHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
EKGKECIKIRHDYSEESVVLKLIKLFSNLFEAGLHRFSVTYVSGLIIFDFSLPEISVEDV
HCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHEEECCCCCCCHHHH
VKISPGLDFYE
HCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA