| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227326
Identifier: 21227326
GI number: 21227326
Start: 1449674
End: 1451107
Strand: Reverse
Name: 21227326
Synonym: MM_1224
Alternate gene names: NA
Gene position: 1451107-1449674 (Counterclockwise)
Preceding gene: 21227331
Following gene: 21227323
Centisome position: 35.42
GC content: 45.12
Gene sequence:
>1434_bases ATGGCTATGAAACCCAGAATTGCAGAATCTCCTCAGGTTCGTTTGATTGACCTCAAGTCAAAACCATTCTTTATAGTAGC TTCGGTAGAAGTAGGAAATACCACAACCAAATGTATCCTTACAGCCACCAATCTGGATACTGGCAGGACGCACATCATAA ATAAAGTCGTGCGTATGACCAGAGATGTCCGTCCTCCAAAACCCGGAGAAGCTGTATTTGGAAAAACACTTACTGGTGTA GAACTTACACGCGAGGCTGTTGCAGAACTTGTTAAGAATACACTTACAGAATCCGTTGAAAAAGCCAGTCTGGACATAAA GACTGACCTTAATTTTGTTGTTCGCTCTACTGGTGTCGTTGCAGGCTTTGATTCTCCTGAAGAAGTCGGCGAATTTATTA AAGCACTGGCAGATGGGTGTCTTATGGCTGGTGTTCCTCCAAGAAATATGACTGCTCCAATGTCCATTTCAAATATCCCT AAAAAATTCCAGAAATACAGTAAACTGGAGAAAGTTATTTTTGATGGGGCAGTTGCCGGGGTTGTGCCCCCAATAGGCTC TACGGGAGTTGAAATTGTCGCAAACGAGATGGAAGGTGAACTTGCAACTGCAGGAATAAAGGAAGCGGCTAAATTGACAG ATGTGGATTTCAGGAACCCCTGCATCTCAATTGACTTCGGGACCACCCTTGACGGCAGGATAACAAGTTCTGACCAGCCT TATGCAAAAACAATTGGTAATTTCTGCGGATATGCAGGCGCAATTCCGGACGCCATAATTCGGGGCTCAAAGGTCGTTGA TTCGAAAGTAGGAACTGCTCTGGAAGTTTTTGAAAAACAGAAACCGCCTTCTTTCATTACTTTGAAAATGAAAGCTAAAT CCATAGAAGAGTATTCAAGGCGTATTCATGAGCTGATAACTATTGAAAAAGTCCCCAGGGATAGAAAGAGATACGGCAGT GTCCCTGTCAGACCCGACGCGGCTGAAGAGATAGGCGTAATACTTATAGGCTGCGATGTGGGTGAGAATGGCTCAAATAT GGGAAAACTGAGTGCAATAGGCATGGAAGTCTGTAAAAGCCATGGATTATCGATTGTTTATGCAGTCATTGATGAGGTGA TGGCAGGAGTGGTGTGCAGGCTCATAGAGGTTGCAAAGAAAGAAGGCCTTATTTTTGAAGACAGCACTTTCGGAGTTACA GGCAGGGCAGGAATTACCGGGAACAAACCTAAACTGATTTTGAACTGCCTGGAGAAAATGAATCTCGCCCCCAAGATTGA TGAGAGAGTGGTCTTTGTCGACGATGGGCTTGCCAGAGGCGCAGCTGTTATGGCACGCTGCATGAACTCTCTGGGAACCC CACAAAATCCGCTTGGTGGCAGGCACGGTGGGAAATGTATCCTTGCCCAGCGGATCAAAATGCAGGAAAAATGA
Upstream 100 bases:
>100_bases TGTGTTCCAATACAAATACATTAATTTTCAGTTGCAGGTTCAATAGTATAAGATGCGGATCCAATTCAGTCTATAATAGA TCCTCAGGAAGGGAAAAAAA
Downstream 100 bases:
>100_bases AAGGATAGCCCAGGTGAAATGGTAGTGTCTACAGCAAACTGCCTTTTCTCTTAATATAGCTCACATAAACAAAAGAAATA GCTGTTTAAAGGCAGGCATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 477; Mature: 476
Protein sequence:
>477_residues MAMKPRIAESPQVRLIDLKSKPFFIVASVEVGNTTTKCILTATNLDTGRTHIINKVVRMTRDVRPPKPGEAVFGKTLTGV ELTREAVAELVKNTLTESVEKASLDIKTDLNFVVRSTGVVAGFDSPEEVGEFIKALADGCLMAGVPPRNMTAPMSISNIP KKFQKYSKLEKVIFDGAVAGVVPPIGSTGVEIVANEMEGELATAGIKEAAKLTDVDFRNPCISIDFGTTLDGRITSSDQP YAKTIGNFCGYAGAIPDAIIRGSKVVDSKVGTALEVFEKQKPPSFITLKMKAKSIEEYSRRIHELITIEKVPRDRKRYGS VPVRPDAAEEIGVILIGCDVGENGSNMGKLSAIGMEVCKSHGLSIVYAVIDEVMAGVVCRLIEVAKKEGLIFEDSTFGVT GRAGITGNKPKLILNCLEKMNLAPKIDERVVFVDDGLARGAAVMARCMNSLGTPQNPLGGRHGGKCILAQRIKMQEK
Sequences:
>Translated_477_residues MAMKPRIAESPQVRLIDLKSKPFFIVASVEVGNTTTKCILTATNLDTGRTHIINKVVRMTRDVRPPKPGEAVFGKTLTGV ELTREAVAELVKNTLTESVEKASLDIKTDLNFVVRSTGVVAGFDSPEEVGEFIKALADGCLMAGVPPRNMTAPMSISNIP KKFQKYSKLEKVIFDGAVAGVVPPIGSTGVEIVANEMEGELATAGIKEAAKLTDVDFRNPCISIDFGTTLDGRITSSDQP YAKTIGNFCGYAGAIPDAIIRGSKVVDSKVGTALEVFEKQKPPSFITLKMKAKSIEEYSRRIHELITIEKVPRDRKRYGS VPVRPDAAEEIGVILIGCDVGENGSNMGKLSAIGMEVCKSHGLSIVYAVIDEVMAGVVCRLIEVAKKEGLIFEDSTFGVT GRAGITGNKPKLILNCLEKMNLAPKIDERVVFVDDGLARGAAVMARCMNSLGTPQNPLGGRHGGKCILAQRIKMQEK >Mature_476_residues AMKPRIAESPQVRLIDLKSKPFFIVASVEVGNTTTKCILTATNLDTGRTHIINKVVRMTRDVRPPKPGEAVFGKTLTGVE LTREAVAELVKNTLTESVEKASLDIKTDLNFVVRSTGVVAGFDSPEEVGEFIKALADGCLMAGVPPRNMTAPMSISNIPK KFQKYSKLEKVIFDGAVAGVVPPIGSTGVEIVANEMEGELATAGIKEAAKLTDVDFRNPCISIDFGTTLDGRITSSDQPY AKTIGNFCGYAGAIPDAIIRGSKVVDSKVGTALEVFEKQKPPSFITLKMKAKSIEEYSRRIHELITIEKVPRDRKRYGSV PVRPDAAEEIGVILIGCDVGENGSNMGKLSAIGMEVCKSHGLSIVYAVIDEVMAGVVCRLIEVAKKEGLIFEDSTFGVTG RAGITGNKPKLILNCLEKMNLAPKIDERVVFVDDGLARGAAVMARCMNSLGTPQNPLGGRHGGKCILAQRIKMQEK
Specific function: Unknown
COG id: COG4065
COG function: function code S; Uncharacterized protein conserved in archaea
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.thermoautotrophicum MTH1153 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008303 [H]
Pfam domain/function: PF09887 DUF2114 [H]
EC number: NA
Molecular weight: Translated: 51279; Mature: 51148
Theoretical pI: Translated: 8.67; Mature: 8.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMKPRIAESPQVRLIDLKSKPFFIVASVEVGNTTTKCILTATNLDTGRTHIINKVVRMT CCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHH RDVRPPKPGEAVFGKTLTGVELTREAVAELVKNTLTESVEKASLDIKTDLNFVVRSTGVV HCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEEEECCCEE AGFDSPEEVGEFIKALADGCLMAGVPPRNMTAPMSISNIPKKFQKYSKLEKVIFDGAVAG ECCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHH VVPPIGSTGVEIVANEMEGELATAGIKEAAKLTDVDFRNPCISIDFGTTLDGRITSSDQP CCCCCCCCCHHEEEHHHCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEECCCCCC YAKTIGNFCGYAGAIPDAIIRGSKVVDSKVGTALEVFEKQKPPSFITLKMKAKSIEEYSR HHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHH RIHELITIEKVPRDRKRYGSVPVRPDAAEEIGVILIGCDVGENGSNMGKLSAIGMEVCKS HHHHHHHHHHCCCHHHHCCCCCCCCCCHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH HGLSIVYAVIDEVMAGVVCRLIEVAKKEGLIFEDSTFGVTGRAGITGNKPKLILNCLEKM CCCEEHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHC NLAPKIDERVVFVDDGLARGAAVMARCMNSLGTPQNPLGGRHGGKCILAQRIKMQEK CCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHCCC >Mature Secondary Structure AMKPRIAESPQVRLIDLKSKPFFIVASVEVGNTTTKCILTATNLDTGRTHIINKVVRMT CCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHH RDVRPPKPGEAVFGKTLTGVELTREAVAELVKNTLTESVEKASLDIKTDLNFVVRSTGVV HCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEEEECCCEE AGFDSPEEVGEFIKALADGCLMAGVPPRNMTAPMSISNIPKKFQKYSKLEKVIFDGAVAG ECCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHH VVPPIGSTGVEIVANEMEGELATAGIKEAAKLTDVDFRNPCISIDFGTTLDGRITSSDQP CCCCCCCCCHHEEEHHHCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEECCCCCC YAKTIGNFCGYAGAIPDAIIRGSKVVDSKVGTALEVFEKQKPPSFITLKMKAKSIEEYSR HHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHH RIHELITIEKVPRDRKRYGSVPVRPDAAEEIGVILIGCDVGENGSNMGKLSAIGMEVCKS HHHHHHHHHHCCCHHHHCCCCCCCCCCHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH HGLSIVYAVIDEVMAGVVCRLIEVAKKEGLIFEDSTFGVTGRAGITGNKPKLILNCLEKM CCCEEHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHC NLAPKIDERVVFVDDGLARGAAVMARCMNSLGTPQNPLGGRHGGKCILAQRIKMQEK CCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]