| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227300
Identifier: 21227300
GI number: 21227300
Start: 1423724
End: 1425028
Strand: Reverse
Name: 21227300
Synonym: MM_1198
Alternate gene names: NA
Gene position: 1425028-1423724 (Counterclockwise)
Preceding gene: 21227305
Following gene: 21227295
Centisome position: 34.79
GC content: 32.26
Gene sequence:
>1305_bases ATGGTAACTATAAACCTTACTCTTAATAACTTTTCGGAGCTCCCTTCTCTCTTAGACGTTTTTGGTTGTTTTGGAAACGA TTACGAATACACTACACAAGGAATTTTTCGTAGAAAAATTCCTCCAGCCTGTTCAATTTGTAGTACTCCAATGGTTCATA ATGGCTATAATCCCCATACCAAACAAGGTCTTGGCGAAATCAACATTGGTAGATATAAATGCTCAAATTGTGGTCGTACA TACGAAGAAGATTATAGTTTTTGGGGAGATCTGAAAGCTTTACTTTTTGATTCATTCAATGATTTCTTCAAGTTACTCAG ATACCATAAAGTTTCATACGATGGAATTTCTGATATAATGGAATTTATCTATCCAAGATCAAGAAGCACTATTTTAAGAG CATTCTACAAAGAAATGGAACAGGAAACTGTTCCATTTTCAGAAAATATACATATGGTACACTATGACGAACAACATCCA AAAGAAGGACGCTGTCAGAAATACCGTTTAACCTTACTGGACGCAAAAACTCAAACAACAATAGCAGATGACCTTTTTGA TGATAAGAGTCCAGAAACAATCAAGGAATTTCTACGGAAAAATCTTGATGCATCAGAACCTGTGTTTATCGTTACGGATT TTGATAAGAGATATCCTGATATATTAAAGGAAATTTTTGGAGATAAGTTAGTTCATCAATATTGTTTGATGCACTTAAAC AAGCTTATAGTTAGTGATTTCCCAAAGAATACAACGATTGAACAGGAACTATTGAAGTACAGGTTATTGAATATATTTTA CAATCGAGAGAATGAAATTAAGTTTCTGGAAGAACTTCTATCTGAAGAACTCAACGTAATTAATAATGAAGAAAAACATC AAGAATGGAGTAAAAAAGCAAAAAAGGAATTTAACCAATTTAGACGTAAATTAAAGCTTGAAAGAAGACGAAAAAAGGAA AATCTTCCACTTAATAGTCTTGAAAAAGCAAGAGATAACTTCGATAAATTAATGGAAAATATAAGAACATACGATCAAAC GATTCAAAAACGATTATGGATGATCAATAAACACTGGTTAAATCTTACTTTGTTCCATTATCTTCCAGGAGCGCCAGCGA CAAATAACCCTATAGAAAGCTATTATTCTAAAAGTCTAAAAACTGATAACAAGAAGCAGTTCAGGACTGATAAAGGAATT GGGAACCAGATTAAACTTACTCAAATGAGAAGATTAAATTTGCTCAAGAAACCACAAAAGTCATTTCTGGAATTGTTCAG ATTATTTAATCCATTTAAGCTTTAG
Upstream 100 bases:
>100_bases GGTATCGACTCAGTTCCAAAATCTAGTGATAAAAGTAAATGTAACATCACTACACAAAATTATAATTCTATAATTATGTA ATGATGTTACGGCAAAAACA
Downstream 100 bases:
>100_bases TAATCTAGTTTGAGAGAGGAGTTAAGGATTATGTAGCGGAGCGTATCGATTTAAGGCAAAAAATAAAGTGAAAAGTTAAA GGAATAAAAGAATTCTTTGG
Product: transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 434; Mature: 434
Protein sequence:
>434_residues MVTINLTLNNFSELPSLLDVFGCFGNDYEYTTQGIFRRKIPPACSICSTPMVHNGYNPHTKQGLGEINIGRYKCSNCGRT YEEDYSFWGDLKALLFDSFNDFFKLLRYHKVSYDGISDIMEFIYPRSRSTILRAFYKEMEQETVPFSENIHMVHYDEQHP KEGRCQKYRLTLLDAKTQTTIADDLFDDKSPETIKEFLRKNLDASEPVFIVTDFDKRYPDILKEIFGDKLVHQYCLMHLN KLIVSDFPKNTTIEQELLKYRLLNIFYNRENEIKFLEELLSEELNVINNEEKHQEWSKKAKKEFNQFRRKLKLERRRKKE NLPLNSLEKARDNFDKLMENIRTYDQTIQKRLWMINKHWLNLTLFHYLPGAPATNNPIESYYSKSLKTDNKKQFRTDKGI GNQIKLTQMRRLNLLKKPQKSFLELFRLFNPFKL
Sequences:
>Translated_434_residues MVTINLTLNNFSELPSLLDVFGCFGNDYEYTTQGIFRRKIPPACSICSTPMVHNGYNPHTKQGLGEINIGRYKCSNCGRT YEEDYSFWGDLKALLFDSFNDFFKLLRYHKVSYDGISDIMEFIYPRSRSTILRAFYKEMEQETVPFSENIHMVHYDEQHP KEGRCQKYRLTLLDAKTQTTIADDLFDDKSPETIKEFLRKNLDASEPVFIVTDFDKRYPDILKEIFGDKLVHQYCLMHLN KLIVSDFPKNTTIEQELLKYRLLNIFYNRENEIKFLEELLSEELNVINNEEKHQEWSKKAKKEFNQFRRKLKLERRRKKE NLPLNSLEKARDNFDKLMENIRTYDQTIQKRLWMINKHWLNLTLFHYLPGAPATNNPIESYYSKSLKTDNKKQFRTDKGI GNQIKLTQMRRLNLLKKPQKSFLELFRLFNPFKL >Mature_434_residues MVTINLTLNNFSELPSLLDVFGCFGNDYEYTTQGIFRRKIPPACSICSTPMVHNGYNPHTKQGLGEINIGRYKCSNCGRT YEEDYSFWGDLKALLFDSFNDFFKLLRYHKVSYDGISDIMEFIYPRSRSTILRAFYKEMEQETVPFSENIHMVHYDEQHP KEGRCQKYRLTLLDAKTQTTIADDLFDDKSPETIKEFLRKNLDASEPVFIVTDFDKRYPDILKEIFGDKLVHQYCLMHLN KLIVSDFPKNTTIEQELLKYRLLNIFYNRENEIKFLEELLSEELNVINNEEKHQEWSKKAKKEFNQFRRKLKLERRRKKE NLPLNSLEKARDNFDKLMENIRTYDQTIQKRLWMINKHWLNLTLFHYLPGAPATNNPIESYYSKSLKTDNKKQFRTDKGI GNQIKLTQMRRLNLLKKPQKSFLELFRLFNPFKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51821; Mature: 51821
Theoretical pI: Translated: 9.21; Mature: 9.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVTINLTLNNFSELPSLLDVFGCFGNDYEYTTQGIFRRKIPPACSICSTPMVHNGYNPHT CEEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHH KQGLGEINIGRYKCSNCGRTYEEDYSFWGDLKALLFDSFNDFFKLLRYHKVSYDGISDIM HCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH EFIYPRSRSTILRAFYKEMEQETVPFSENIHMVHYDEQHPKEGRCQKYRLTLLDAKTQTT HHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHEEEEEEECCHHHH IADDLFDDKSPETIKEFLRKNLDASEPVFIVTDFDKRYPDILKEIFGDKLVHQYCLMHLN HHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH KLIVSDFPKNTTIEQELLKYRLLNIFYNRENEIKFLEELLSEELNVINNEEKHQEWSKKA HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH KKEFNQFRRKLKLERRRKKENLPLNSLEKARDNFDKLMENIRTYDQTIQKRLWMINKHWL HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NLTLFHYLPGAPATNNPIESYYSKSLKTDNKKQFRTDKGIGNQIKLTQMRRLNLLKKPQK HEEHEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCHHH SFLELFRLFNPFKL HHHHHHHHHCCCCC >Mature Secondary Structure MVTINLTLNNFSELPSLLDVFGCFGNDYEYTTQGIFRRKIPPACSICSTPMVHNGYNPHT CEEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHH KQGLGEINIGRYKCSNCGRTYEEDYSFWGDLKALLFDSFNDFFKLLRYHKVSYDGISDIM HCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH EFIYPRSRSTILRAFYKEMEQETVPFSENIHMVHYDEQHPKEGRCQKYRLTLLDAKTQTT HHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHEEEEEEECCHHHH IADDLFDDKSPETIKEFLRKNLDASEPVFIVTDFDKRYPDILKEIFGDKLVHQYCLMHLN HHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH KLIVSDFPKNTTIEQELLKYRLLNIFYNRENEIKFLEELLSEELNVINNEEKHQEWSKKA HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH KKEFNQFRRKLKLERRRKKENLPLNSLEKARDNFDKLMENIRTYDQTIQKRLWMINKHWL HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NLTLFHYLPGAPATNNPIESYYSKSLKTDNKKQFRTDKGIGNQIKLTQMRRLNLLKKPQK HEEHEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCHHH SFLELFRLFNPFKL HHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA