| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227258
Identifier: 21227258
GI number: 21227258
Start: 1374221
End: 1375729
Strand: Direct
Name: 21227258
Synonym: MM_1156
Alternate gene names: NA
Gene position: 1374221-1375729 (Clockwise)
Preceding gene: 21227257
Following gene: 21227259
Centisome position: 33.55
GC content: 45.39
Gene sequence:
>1509_bases ATGGATAAAAAGACAGAAAAATCAGCAGAAAAGCCATCTAATAACGAGAAAAAGTCAAGTTTTGCGTCGGATGTACTGAC ACTTGCAGGCGGAACAACTTTTGCCCAGATCCTTACGATTCTGGCAGCCCCTGTCCTTACCCGGCTTTACGGACCTGAAG ACTTTGGAGTCTGGGCTCTTTACGTCTCCATCACCAGCATTATAAGTGTTATTTCATGCCTCAGGTATGACTATTCTATA ATGCTGCCAGAATCAGACAGGGAGGCGGTAAACCTTTTAGGTCTTAGCGTCCTTGCAGTCCTGACTGTGACCGGATTAAC CGTGCCAGCAGTATGGTATTTTAAAGCCCAGCTGGTTGATCTCTTAAATGCCCCGCAGATAGAGGGTTATTTATGGCTTA TCCCTCCGTTCGTGTTTGTAAACGGGATTTTTCTTGCACTCACCCACTGGAACTCAAGAACAAAGCTCTTCAAGAGGCTC TCTTTCTCAAAGATTTCCAGTTCGGTTTCAACCACTGCAACCCAGATAGCCCTGGGACTTATGCAGCACCCTCCGACCTC AGCCGGTTTAATAGGGGGCAGTCTTGCAGGTCAGTCTATAGCGACATTTGTGCTTGGGGGCCAGATCTGGAGAGATGATA AAAACCTGATAAAAAAGAGCCTGAGCTGGAAGGAAATATATGAAGGCGCTGTGCGTCACCGCAACCTTCCTCTTATAGAC AGCTGGTCTGCCCTTATGAACTCGGTTTCCTGGCAGCTCCCGGCTTTTCTACTCTCAGCGTTTTTTACTCCCGCAATAGT CGGCTTCTATTCCCTTGGGTTCCGCCTGCTTCAGTTGCCTATGAGTTTTATCGGCGGCTCAATCTCACAGGTATTTTATC AGAGGGCATCCAGAGCAGTATCCGACGGCACCCTCAGCATTCTTGTAGAAAGTGTTTTCAGAATACTTGTGATTATAGGC ATGTTTCCTATACTGATTCTCACAATTGTAGGCGGAGACGTCTTTACAGTAGTTTTCGGGAGAGCCTGGACGGAAGCAGG AGTATATGCCCAGATCCTGAGCCTCTGGGCTTTTATATGGTTTATCTCATCCCCCTTGACCACAATATACCTGGTTGTGG AAGAGCACCATTTCGGCTTCAGCTATAACTTTTTCAACCTTACAACCCGCTTCCTTTCTCTTACAATCGGAGGCATTCTC GGAAACGCTCGTATAGCCCTTATCCTTTTTTCAATATCAGGTATTGTGGTATATGGGTATCTGTGCCTGAAAATGATGTA TTACTCAGGAGTAAAGACTTCGAAAGCCCTTAAAATAGTATTCTCAAACTTTGTCCTTTTTATCCCTGCGGGAGTGGTTC TTACTGCGCTCAAGACCGCGGGAATAAACCAGATCCTTCTTGTTGTAATATCCGGTTTGATAATCTGCATTTACTATCTG TATATATTGAAAATGGATAAGCAGATGAAAGAGATTATTGCCGAGTTCAAACTTCCGGGAAAAGCGTAA
Upstream 100 bases:
>100_bases CTTCAGGGAAATATGCTTCAGGGGCATTAAATAACCCCACACAGGAATTAAAAGTTTTAGATATCTGGCTGAAAAACAAC TTCCTTCACAGGGTACTGCT
Downstream 100 bases:
>100_bases GAGACTGAAATTTACACGTCTACACCTCAGGATGATCAGGACAAACGAAAATAATGCTGAAAAATGTTATTAACTCAATT GGTTTCCATAGCCCCGGACT
Product: O-antigen translocase
Products: NA
Alternate protein names: O-Antigen Translocase; O-Antigen And Teichoic Acid-Like Export Protein; RfbX Family O-Antigen/Teichoic Acid Export Protein; WzxA Protein; Polysacharide Biosyntheis Protein; O-Antigen Flippase Wzx
Number of amino acids: Translated: 502; Mature: 502
Protein sequence:
>502_residues MDKKTEKSAEKPSNNEKKSSFASDVLTLAGGTTFAQILTILAAPVLTRLYGPEDFGVWALYVSITSIISVISCLRYDYSI MLPESDREAVNLLGLSVLAVLTVTGLTVPAVWYFKAQLVDLLNAPQIEGYLWLIPPFVFVNGIFLALTHWNSRTKLFKRL SFSKISSSVSTTATQIALGLMQHPPTSAGLIGGSLAGQSIATFVLGGQIWRDDKNLIKKSLSWKEIYEGAVRHRNLPLID SWSALMNSVSWQLPAFLLSAFFTPAIVGFYSLGFRLLQLPMSFIGGSISQVFYQRASRAVSDGTLSILVESVFRILVIIG MFPILILTIVGGDVFTVVFGRAWTEAGVYAQILSLWAFIWFISSPLTTIYLVVEEHHFGFSYNFFNLTTRFLSLTIGGIL GNARIALILFSISGIVVYGYLCLKMMYYSGVKTSKALKIVFSNFVLFIPAGVVLTALKTAGINQILLVVISGLIICIYYL YILKMDKQMKEIIAEFKLPGKA
Sequences:
>Translated_502_residues MDKKTEKSAEKPSNNEKKSSFASDVLTLAGGTTFAQILTILAAPVLTRLYGPEDFGVWALYVSITSIISVISCLRYDYSI MLPESDREAVNLLGLSVLAVLTVTGLTVPAVWYFKAQLVDLLNAPQIEGYLWLIPPFVFVNGIFLALTHWNSRTKLFKRL SFSKISSSVSTTATQIALGLMQHPPTSAGLIGGSLAGQSIATFVLGGQIWRDDKNLIKKSLSWKEIYEGAVRHRNLPLID SWSALMNSVSWQLPAFLLSAFFTPAIVGFYSLGFRLLQLPMSFIGGSISQVFYQRASRAVSDGTLSILVESVFRILVIIG MFPILILTIVGGDVFTVVFGRAWTEAGVYAQILSLWAFIWFISSPLTTIYLVVEEHHFGFSYNFFNLTTRFLSLTIGGIL GNARIALILFSISGIVVYGYLCLKMMYYSGVKTSKALKIVFSNFVLFIPAGVVLTALKTAGINQILLVVISGLIICIYYL YILKMDKQMKEIIAEFKLPGKA >Mature_502_residues MDKKTEKSAEKPSNNEKKSSFASDVLTLAGGTTFAQILTILAAPVLTRLYGPEDFGVWALYVSITSIISVISCLRYDYSI MLPESDREAVNLLGLSVLAVLTVTGLTVPAVWYFKAQLVDLLNAPQIEGYLWLIPPFVFVNGIFLALTHWNSRTKLFKRL SFSKISSSVSTTATQIALGLMQHPPTSAGLIGGSLAGQSIATFVLGGQIWRDDKNLIKKSLSWKEIYEGAVRHRNLPLID SWSALMNSVSWQLPAFLLSAFFTPAIVGFYSLGFRLLQLPMSFIGGSISQVFYQRASRAVSDGTLSILVESVFRILVIIG MFPILILTIVGGDVFTVVFGRAWTEAGVYAQILSLWAFIWFISSPLTTIYLVVEEHHFGFSYNFFNLTTRFLSLTIGGIL GNARIALILFSISGIVVYGYLCLKMMYYSGVKTSKALKIVFSNFVLFIPAGVVLTALKTAGINQILLVVISGLIICIYYL YILKMDKQMKEIIAEFKLPGKA
Specific function: Unknown
COG id: COG2244
COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55366; Mature: 55366
Theoretical pI: Translated: 9.78; Mature: 9.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKKTEKSAEKPSNNEKKSSFASDVLTLAGGTTFAQILTILAAPVLTRLYGPEDFGVWAL CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHH YVSITSIISVISCLRYDYSIMLPESDREAVNLLGLSVLAVLTVTGLTVPAVWYFKAQLVD HHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH LLNAPQIEGYLWLIPPFVFVNGIFLALTHWNSRTKLFKRLSFSKISSSVSTTATQIALGL HHCCCCCCCEEEEECHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MQHPPTSAGLIGGSLAGQSIATFVLGGQIWRDDKNLIKKSLSWKEIYEGAVRHRNLPLID HCCCCCCCCCCCCHHCHHHHHHHHHCCHHCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCH SWSALMNSVSWQLPAFLLSAFFTPAIVGFYSLGFRLLQLPMSFIGGSISQVFYQRASRAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH SDGTLSILVESVFRILVIIGMFPILILTIVGGDVFTVVFGRAWTEAGVYAQILSLWAFIW CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH FISSPLTTIYLVVEEHHFGFSYNFFNLTTRFLSLTIGGILGNARIALILFSISGIVVYGY HHHCCHHEEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH LCLKMMYYSGVKTSKALKIVFSNFVLFIPAGVVLTALKTAGINQILLVVISGLIICIYYL HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH YILKMDKQMKEIIAEFKLPGKA HHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MDKKTEKSAEKPSNNEKKSSFASDVLTLAGGTTFAQILTILAAPVLTRLYGPEDFGVWAL CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHH YVSITSIISVISCLRYDYSIMLPESDREAVNLLGLSVLAVLTVTGLTVPAVWYFKAQLVD HHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH LLNAPQIEGYLWLIPPFVFVNGIFLALTHWNSRTKLFKRLSFSKISSSVSTTATQIALGL HHCCCCCCCEEEEECHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MQHPPTSAGLIGGSLAGQSIATFVLGGQIWRDDKNLIKKSLSWKEIYEGAVRHRNLPLID HCCCCCCCCCCCCHHCHHHHHHHHHCCHHCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCH SWSALMNSVSWQLPAFLLSAFFTPAIVGFYSLGFRLLQLPMSFIGGSISQVFYQRASRAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH SDGTLSILVESVFRILVIIGMFPILILTIVGGDVFTVVFGRAWTEAGVYAQILSLWAFIW CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH FISSPLTTIYLVVEEHHFGFSYNFFNLTTRFLSLTIGGILGNARIALILFSISGIVVYGY HHHCCHHEEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH LCLKMMYYSGVKTSKALKIVFSNFVLFIPAGVVLTALKTAGINQILLVVISGLIICIYYL HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH YILKMDKQMKEIIAEFKLPGKA HHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA