Definition Methanosarcina mazei Go1 chromosome, complete genome.
Accession NC_003901
Length 4,096,345

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The map label for this gene is 21227221

Identifier: 21227221

GI number: 21227221

Start: 1316062

End: 1317672

Strand: Direct

Name: 21227221

Synonym: MM_1119

Alternate gene names: NA

Gene position: 1316062-1317672 (Clockwise)

Preceding gene: 21227220

Following gene: 21227222

Centisome position: 32.13

GC content: 40.78

Gene sequence:

>1611_bases
ATGAGTGGGAAAGATCTGGCAAATATATGGAAAAACAGGAAAAAAATGGGAGTTTGCATTACAGTCTTTATACTTCTGGT
TGTGACGACTACAACAGCCCTTTCCATAACGCTACCGGAAGAAACTGTTTACGTGGCTGGAGATGGGAGAGGTGACTATA
ACTGTAACGGAACTGACGACCAGATAGAGATCAATGAAGCCCTCGCATACGTAGCAGAAAACCCTGAGTTTACAACAGTC
CACTTGAAAGGTCCAAACACATACGTTATCTCGGACAGCATTTTGATAGGAAGCAATGTAACCTTTCAGGGGGATTCTAC
AGCTGTAATAAAACTCAAAGACAGAGCAGATTGGCCGTCCTTGAAGCCTCTCATTACCCAGAGAGATTTTTCGGAACAGA
ATATTACCATAAGAGGTTTCGAAATTGACGGGAATCATGATGGGAATGAGGAAAAAAATAAAGGTGAAGGATATTATAAC
CTGATCTATCTCAATAACACAACAAATATTCAGGTTCATGACATGTATATGCACGACGGTCATGGAGATGGATTGAAAGT
TGAAAATAGTTCCAATATCCAGTTCTACAATAATAAGGTATATAAGCTCGGGCATGAAGGTCTCTATGGGATCCAGTCTC
AATATCTGAAAGCCTGGAATAATACAATAACCTGCAGGACCAACAGCGGGCTTAGAGTATGGGATTCAAATCATGTAAAA
TTCCATGATAATGTTATTGATTCCTTCTATCACTGGAGTGCAGGAGGACCCGGGATTCAAATTCAAAAATCTTCAGCCGT
TATGGACGATATAGAAGTCTATAATAATACTATCTACAACACTTATGGGCCCGGAATCTGGCTGGTAGGTTACGACAATT
CATATTCAACAGAAGAAGCTCAGAATGTCCAAATTCACCATAATATATTTTATAGTACAGGCACGAACCCGAACATTGAC
TGGGTAGGAGGTATTGTAACCAGCGGGTTTTACAATACCCTGATAGAGAATAACGTGTTTGACGGGACATATCATACTGC
CATTGCCCTGATGCACCCTACGGGATATTCTACGGATCTCTCACCAAAAGATACTGGATATACAACCATTGTGCGCAATA
ATATCATAGTGGACACACTTGAACGTAAGAACGACCCGGAAGGTACAGGGTATGGTGTAATTAATTATCTGCCTGAAACC
CACAGCTTTATACTGGAAAATAACTGCTTTTACAATAATACGGCAGGAAACTATAAAAATGCAAATTCGACAGGTGATAT
ATATGAGAACCCCCGATTTGCAAATCAGAAGGAAAATGATTACCATCTAAGATCAATAGGCGGCAGATGGAATGGAAAAA
CATGGGTAAAAGATTTCCAGACATCACCCTGCATTGACGCTGGATATCCGTCCTCTGATTGCTCCAATGAGCCTGATGAC
AATGGGGGCAGGATCAATATAGGGAGATATGGAAACACCGAAGAAGCATCAAAGTCAGGGGTGATGCCCGGATATGTTGC
ATGGTGGAATGAGATACTTTCACCAGAATGGAGGATACTAAGGACACTCCTGAGGATATTCCTTTTATTCTGCTTTAAAA
TCCAGATATAA

Upstream 100 bases:

>100_bases
AACTTCACGCTTCTTGAAGACCTCCATAACAGTTCTGTTCTTGCATTAATAAACTTTTTTCGAGATTGGAGGGTTATATC
TCAGGACACAGGGATGAAAA

Downstream 100 bases:

>100_bases
TTTATTTTCAGGTATCTTTTGAGTTAAAATTTAATTCCATCCCTGAAATAAATATTCTGGCTTAAATTTTCAGGGATTTG
TTTTTATATTAGGATTAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 536; Mature: 535

Protein sequence:

>536_residues
MSGKDLANIWKNRKKMGVCITVFILLVVTTTTALSITLPEETVYVAGDGRGDYNCNGTDDQIEINEALAYVAENPEFTTV
HLKGPNTYVISDSILIGSNVTFQGDSTAVIKLKDRADWPSLKPLITQRDFSEQNITIRGFEIDGNHDGNEEKNKGEGYYN
LIYLNNTTNIQVHDMYMHDGHGDGLKVENSSNIQFYNNKVYKLGHEGLYGIQSQYLKAWNNTITCRTNSGLRVWDSNHVK
FHDNVIDSFYHWSAGGPGIQIQKSSAVMDDIEVYNNTIYNTYGPGIWLVGYDNSYSTEEAQNVQIHHNIFYSTGTNPNID
WVGGIVTSGFYNTLIENNVFDGTYHTAIALMHPTGYSTDLSPKDTGYTTIVRNNIIVDTLERKNDPEGTGYGVINYLPET
HSFILENNCFYNNTAGNYKNANSTGDIYENPRFANQKENDYHLRSIGGRWNGKTWVKDFQTSPCIDAGYPSSDCSNEPDD
NGGRINIGRYGNTEEASKSGVMPGYVAWWNEILSPEWRILRTLLRIFLLFCFKIQI

Sequences:

>Translated_536_residues
MSGKDLANIWKNRKKMGVCITVFILLVVTTTTALSITLPEETVYVAGDGRGDYNCNGTDDQIEINEALAYVAENPEFTTV
HLKGPNTYVISDSILIGSNVTFQGDSTAVIKLKDRADWPSLKPLITQRDFSEQNITIRGFEIDGNHDGNEEKNKGEGYYN
LIYLNNTTNIQVHDMYMHDGHGDGLKVENSSNIQFYNNKVYKLGHEGLYGIQSQYLKAWNNTITCRTNSGLRVWDSNHVK
FHDNVIDSFYHWSAGGPGIQIQKSSAVMDDIEVYNNTIYNTYGPGIWLVGYDNSYSTEEAQNVQIHHNIFYSTGTNPNID
WVGGIVTSGFYNTLIENNVFDGTYHTAIALMHPTGYSTDLSPKDTGYTTIVRNNIIVDTLERKNDPEGTGYGVINYLPET
HSFILENNCFYNNTAGNYKNANSTGDIYENPRFANQKENDYHLRSIGGRWNGKTWVKDFQTSPCIDAGYPSSDCSNEPDD
NGGRINIGRYGNTEEASKSGVMPGYVAWWNEILSPEWRILRTLLRIFLLFCFKIQI
>Mature_535_residues
SGKDLANIWKNRKKMGVCITVFILLVVTTTTALSITLPEETVYVAGDGRGDYNCNGTDDQIEINEALAYVAENPEFTTVH
LKGPNTYVISDSILIGSNVTFQGDSTAVIKLKDRADWPSLKPLITQRDFSEQNITIRGFEIDGNHDGNEEKNKGEGYYNL
IYLNNTTNIQVHDMYMHDGHGDGLKVENSSNIQFYNNKVYKLGHEGLYGIQSQYLKAWNNTITCRTNSGLRVWDSNHVKF
HDNVIDSFYHWSAGGPGIQIQKSSAVMDDIEVYNNTIYNTYGPGIWLVGYDNSYSTEEAQNVQIHHNIFYSTGTNPNIDW
VGGIVTSGFYNTLIENNVFDGTYHTAIALMHPTGYSTDLSPKDTGYTTIVRNNIIVDTLERKNDPEGTGYGVINYLPETH
SFILENNCFYNNTAGNYKNANSTGDIYENPRFANQKENDYHLRSIGGRWNGKTWVKDFQTSPCIDAGYPSSDCSNEPDDN
GGRINIGRYGNTEEASKSGVMPGYVAWWNEILSPEWRILRTLLRIFLLFCFKIQI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 60379; Mature: 60248

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGKDLANIWKNRKKMGVCITVFILLVVTTTTALSITLPEETVYVAGDGRGDYNCNGTDD
CCCCHHHHHHHCCHHCCHHHHHHHHHHHHHCEEEEEECCCCEEEEEECCCCCCCCCCCCC
QIEINEALAYVAENPEFTTVHLKGPNTYVISDSILIGSNVTFQGDSTAVIKLKDRADWPS
EEEHHHHEEEEECCCCEEEEEEECCCEEEEECCEEECCCEEECCCCEEEEEEECCCCCCC
LKPLITQRDFSEQNITIRGFEIDGNHDGNEEKNKGEGYYNLIYLNNTTNIQVHDMYMHDG
CCHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEEECC
HGDGLKVENSSNIQFYNNKVYKLGHEGLYGIQSQYLKAWNNTITCRTNSGLRVWDSNHVK
CCCCEEEECCCCEEEECCEEEEECCCCCHHHHHHHHHHHCCEEEEEECCCEEEECCCCEE
FHDNVIDSFYHWSAGGPGIQIQKSSAVMDDIEVYNNTIYNTYGPGIWLVGYDNSYSTEEA
EEHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHCCEEEECCCCEEEEEEECCCCCCCCC
QNVQIHHNIFYSTGTNPNIDWVGGIVTSGFYNTLIENNVFDGTYHTAIALMHPTGYSTDL
CCEEEEEEEEEECCCCCCCEEEHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCC
SPKDTGYTTIVRNNIIVDTLERKNDPEGTGYGVINYLPETHSFILENNCFYNNTAGNYKN
CCCCCCEEEEEECCEEEEEHHCCCCCCCCCCEEEEECCCCCEEEEECCCEECCCCCCCCC
ANSTGDIYENPRFANQKENDYHLRSIGGRWNGKTWVKDFQTSPCIDAGYPSSDCSNEPDD
CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC
NGGRINIGRYGNTEEASKSGVMPGYVAWWNEILSPEWRILRTLLRIFLLFCFKIQI
CCCEEEECCCCCCCHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHEECC
>Mature Secondary Structure 
SGKDLANIWKNRKKMGVCITVFILLVVTTTTALSITLPEETVYVAGDGRGDYNCNGTDD
CCCHHHHHHHCCHHCCHHHHHHHHHHHHHCEEEEEECCCCEEEEEECCCCCCCCCCCCC
QIEINEALAYVAENPEFTTVHLKGPNTYVISDSILIGSNVTFQGDSTAVIKLKDRADWPS
EEEHHHHEEEEECCCCEEEEEEECCCEEEEECCEEECCCEEECCCCEEEEEEECCCCCCC
LKPLITQRDFSEQNITIRGFEIDGNHDGNEEKNKGEGYYNLIYLNNTTNIQVHDMYMHDG
CCHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEEECC
HGDGLKVENSSNIQFYNNKVYKLGHEGLYGIQSQYLKAWNNTITCRTNSGLRVWDSNHVK
CCCCEEEECCCCEEEECCEEEEECCCCCHHHHHHHHHHHCCEEEEEECCCEEEECCCCEE
FHDNVIDSFYHWSAGGPGIQIQKSSAVMDDIEVYNNTIYNTYGPGIWLVGYDNSYSTEEA
EEHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHCCEEEECCCCEEEEEEECCCCCCCCC
QNVQIHHNIFYSTGTNPNIDWVGGIVTSGFYNTLIENNVFDGTYHTAIALMHPTGYSTDL
CCEEEEEEEEEECCCCCCCEEEHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCC
SPKDTGYTTIVRNNIIVDTLERKNDPEGTGYGVINYLPETHSFILENNCFYNNTAGNYKN
CCCCCCEEEEEECCEEEEEHHCCCCCCCCCCEEEEECCCCCEEEEECCCEECCCCCCCCC
ANSTGDIYENPRFANQKENDYHLRSIGGRWNGKTWVKDFQTSPCIDAGYPSSDCSNEPDD
CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC
NGGRINIGRYGNTEEASKSGVMPGYVAWWNEILSPEWRILRTLLRIFLLFCFKIQI
CCCEEEECCCCCCCHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA