| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227221
Identifier: 21227221
GI number: 21227221
Start: 1316062
End: 1317672
Strand: Direct
Name: 21227221
Synonym: MM_1119
Alternate gene names: NA
Gene position: 1316062-1317672 (Clockwise)
Preceding gene: 21227220
Following gene: 21227222
Centisome position: 32.13
GC content: 40.78
Gene sequence:
>1611_bases ATGAGTGGGAAAGATCTGGCAAATATATGGAAAAACAGGAAAAAAATGGGAGTTTGCATTACAGTCTTTATACTTCTGGT TGTGACGACTACAACAGCCCTTTCCATAACGCTACCGGAAGAAACTGTTTACGTGGCTGGAGATGGGAGAGGTGACTATA ACTGTAACGGAACTGACGACCAGATAGAGATCAATGAAGCCCTCGCATACGTAGCAGAAAACCCTGAGTTTACAACAGTC CACTTGAAAGGTCCAAACACATACGTTATCTCGGACAGCATTTTGATAGGAAGCAATGTAACCTTTCAGGGGGATTCTAC AGCTGTAATAAAACTCAAAGACAGAGCAGATTGGCCGTCCTTGAAGCCTCTCATTACCCAGAGAGATTTTTCGGAACAGA ATATTACCATAAGAGGTTTCGAAATTGACGGGAATCATGATGGGAATGAGGAAAAAAATAAAGGTGAAGGATATTATAAC CTGATCTATCTCAATAACACAACAAATATTCAGGTTCATGACATGTATATGCACGACGGTCATGGAGATGGATTGAAAGT TGAAAATAGTTCCAATATCCAGTTCTACAATAATAAGGTATATAAGCTCGGGCATGAAGGTCTCTATGGGATCCAGTCTC AATATCTGAAAGCCTGGAATAATACAATAACCTGCAGGACCAACAGCGGGCTTAGAGTATGGGATTCAAATCATGTAAAA TTCCATGATAATGTTATTGATTCCTTCTATCACTGGAGTGCAGGAGGACCCGGGATTCAAATTCAAAAATCTTCAGCCGT TATGGACGATATAGAAGTCTATAATAATACTATCTACAACACTTATGGGCCCGGAATCTGGCTGGTAGGTTACGACAATT CATATTCAACAGAAGAAGCTCAGAATGTCCAAATTCACCATAATATATTTTATAGTACAGGCACGAACCCGAACATTGAC TGGGTAGGAGGTATTGTAACCAGCGGGTTTTACAATACCCTGATAGAGAATAACGTGTTTGACGGGACATATCATACTGC CATTGCCCTGATGCACCCTACGGGATATTCTACGGATCTCTCACCAAAAGATACTGGATATACAACCATTGTGCGCAATA ATATCATAGTGGACACACTTGAACGTAAGAACGACCCGGAAGGTACAGGGTATGGTGTAATTAATTATCTGCCTGAAACC CACAGCTTTATACTGGAAAATAACTGCTTTTACAATAATACGGCAGGAAACTATAAAAATGCAAATTCGACAGGTGATAT ATATGAGAACCCCCGATTTGCAAATCAGAAGGAAAATGATTACCATCTAAGATCAATAGGCGGCAGATGGAATGGAAAAA CATGGGTAAAAGATTTCCAGACATCACCCTGCATTGACGCTGGATATCCGTCCTCTGATTGCTCCAATGAGCCTGATGAC AATGGGGGCAGGATCAATATAGGGAGATATGGAAACACCGAAGAAGCATCAAAGTCAGGGGTGATGCCCGGATATGTTGC ATGGTGGAATGAGATACTTTCACCAGAATGGAGGATACTAAGGACACTCCTGAGGATATTCCTTTTATTCTGCTTTAAAA TCCAGATATAA
Upstream 100 bases:
>100_bases AACTTCACGCTTCTTGAAGACCTCCATAACAGTTCTGTTCTTGCATTAATAAACTTTTTTCGAGATTGGAGGGTTATATC TCAGGACACAGGGATGAAAA
Downstream 100 bases:
>100_bases TTTATTTTCAGGTATCTTTTGAGTTAAAATTTAATTCCATCCCTGAAATAAATATTCTGGCTTAAATTTTCAGGGATTTG TTTTTATATTAGGATTAAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 536; Mature: 535
Protein sequence:
>536_residues MSGKDLANIWKNRKKMGVCITVFILLVVTTTTALSITLPEETVYVAGDGRGDYNCNGTDDQIEINEALAYVAENPEFTTV HLKGPNTYVISDSILIGSNVTFQGDSTAVIKLKDRADWPSLKPLITQRDFSEQNITIRGFEIDGNHDGNEEKNKGEGYYN LIYLNNTTNIQVHDMYMHDGHGDGLKVENSSNIQFYNNKVYKLGHEGLYGIQSQYLKAWNNTITCRTNSGLRVWDSNHVK FHDNVIDSFYHWSAGGPGIQIQKSSAVMDDIEVYNNTIYNTYGPGIWLVGYDNSYSTEEAQNVQIHHNIFYSTGTNPNID WVGGIVTSGFYNTLIENNVFDGTYHTAIALMHPTGYSTDLSPKDTGYTTIVRNNIIVDTLERKNDPEGTGYGVINYLPET HSFILENNCFYNNTAGNYKNANSTGDIYENPRFANQKENDYHLRSIGGRWNGKTWVKDFQTSPCIDAGYPSSDCSNEPDD NGGRINIGRYGNTEEASKSGVMPGYVAWWNEILSPEWRILRTLLRIFLLFCFKIQI
Sequences:
>Translated_536_residues MSGKDLANIWKNRKKMGVCITVFILLVVTTTTALSITLPEETVYVAGDGRGDYNCNGTDDQIEINEALAYVAENPEFTTV HLKGPNTYVISDSILIGSNVTFQGDSTAVIKLKDRADWPSLKPLITQRDFSEQNITIRGFEIDGNHDGNEEKNKGEGYYN LIYLNNTTNIQVHDMYMHDGHGDGLKVENSSNIQFYNNKVYKLGHEGLYGIQSQYLKAWNNTITCRTNSGLRVWDSNHVK FHDNVIDSFYHWSAGGPGIQIQKSSAVMDDIEVYNNTIYNTYGPGIWLVGYDNSYSTEEAQNVQIHHNIFYSTGTNPNID WVGGIVTSGFYNTLIENNVFDGTYHTAIALMHPTGYSTDLSPKDTGYTTIVRNNIIVDTLERKNDPEGTGYGVINYLPET HSFILENNCFYNNTAGNYKNANSTGDIYENPRFANQKENDYHLRSIGGRWNGKTWVKDFQTSPCIDAGYPSSDCSNEPDD NGGRINIGRYGNTEEASKSGVMPGYVAWWNEILSPEWRILRTLLRIFLLFCFKIQI >Mature_535_residues SGKDLANIWKNRKKMGVCITVFILLVVTTTTALSITLPEETVYVAGDGRGDYNCNGTDDQIEINEALAYVAENPEFTTVH LKGPNTYVISDSILIGSNVTFQGDSTAVIKLKDRADWPSLKPLITQRDFSEQNITIRGFEIDGNHDGNEEKNKGEGYYNL IYLNNTTNIQVHDMYMHDGHGDGLKVENSSNIQFYNNKVYKLGHEGLYGIQSQYLKAWNNTITCRTNSGLRVWDSNHVKF HDNVIDSFYHWSAGGPGIQIQKSSAVMDDIEVYNNTIYNTYGPGIWLVGYDNSYSTEEAQNVQIHHNIFYSTGTNPNIDW VGGIVTSGFYNTLIENNVFDGTYHTAIALMHPTGYSTDLSPKDTGYTTIVRNNIIVDTLERKNDPEGTGYGVINYLPETH SFILENNCFYNNTAGNYKNANSTGDIYENPRFANQKENDYHLRSIGGRWNGKTWVKDFQTSPCIDAGYPSSDCSNEPDDN GGRINIGRYGNTEEASKSGVMPGYVAWWNEILSPEWRILRTLLRIFLLFCFKIQI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60379; Mature: 60248
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: PS00678 WD_REPEATS_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGKDLANIWKNRKKMGVCITVFILLVVTTTTALSITLPEETVYVAGDGRGDYNCNGTDD CCCCHHHHHHHCCHHCCHHHHHHHHHHHHHCEEEEEECCCCEEEEEECCCCCCCCCCCCC QIEINEALAYVAENPEFTTVHLKGPNTYVISDSILIGSNVTFQGDSTAVIKLKDRADWPS EEEHHHHEEEEECCCCEEEEEEECCCEEEEECCEEECCCEEECCCCEEEEEEECCCCCCC LKPLITQRDFSEQNITIRGFEIDGNHDGNEEKNKGEGYYNLIYLNNTTNIQVHDMYMHDG CCHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEEECC HGDGLKVENSSNIQFYNNKVYKLGHEGLYGIQSQYLKAWNNTITCRTNSGLRVWDSNHVK CCCCEEEECCCCEEEECCEEEEECCCCCHHHHHHHHHHHCCEEEEEECCCEEEECCCCEE FHDNVIDSFYHWSAGGPGIQIQKSSAVMDDIEVYNNTIYNTYGPGIWLVGYDNSYSTEEA EEHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHCCEEEECCCCEEEEEEECCCCCCCCC QNVQIHHNIFYSTGTNPNIDWVGGIVTSGFYNTLIENNVFDGTYHTAIALMHPTGYSTDL CCEEEEEEEEEECCCCCCCEEEHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCC SPKDTGYTTIVRNNIIVDTLERKNDPEGTGYGVINYLPETHSFILENNCFYNNTAGNYKN CCCCCCEEEEEECCEEEEEHHCCCCCCCCCCEEEEECCCCCEEEEECCCEECCCCCCCCC ANSTGDIYENPRFANQKENDYHLRSIGGRWNGKTWVKDFQTSPCIDAGYPSSDCSNEPDD CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC NGGRINIGRYGNTEEASKSGVMPGYVAWWNEILSPEWRILRTLLRIFLLFCFKIQI CCCEEEECCCCCCCHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHEECC >Mature Secondary Structure SGKDLANIWKNRKKMGVCITVFILLVVTTTTALSITLPEETVYVAGDGRGDYNCNGTDD CCCHHHHHHHCCHHCCHHHHHHHHHHHHHCEEEEEECCCCEEEEEECCCCCCCCCCCCC QIEINEALAYVAENPEFTTVHLKGPNTYVISDSILIGSNVTFQGDSTAVIKLKDRADWPS EEEHHHHEEEEECCCCEEEEEEECCCEEEEECCEEECCCEEECCCCEEEEEEECCCCCCC LKPLITQRDFSEQNITIRGFEIDGNHDGNEEKNKGEGYYNLIYLNNTTNIQVHDMYMHDG CCHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEEECC HGDGLKVENSSNIQFYNNKVYKLGHEGLYGIQSQYLKAWNNTITCRTNSGLRVWDSNHVK CCCCEEEECCCCEEEECCEEEEECCCCCHHHHHHHHHHHCCEEEEEECCCEEEECCCCEE FHDNVIDSFYHWSAGGPGIQIQKSSAVMDDIEVYNNTIYNTYGPGIWLVGYDNSYSTEEA EEHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHCCEEEECCCCEEEEEEECCCCCCCCC QNVQIHHNIFYSTGTNPNIDWVGGIVTSGFYNTLIENNVFDGTYHTAIALMHPTGYSTDL CCEEEEEEEEEECCCCCCCEEEHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCC SPKDTGYTTIVRNNIIVDTLERKNDPEGTGYGVINYLPETHSFILENNCFYNNTAGNYKN CCCCCCEEEEEECCEEEEEHHCCCCCCCCCCEEEEECCCCCEEEEECCCEECCCCCCCCC ANSTGDIYENPRFANQKENDYHLRSIGGRWNGKTWVKDFQTSPCIDAGYPSSDCSNEPDD CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC NGGRINIGRYGNTEEASKSGVMPGYVAWWNEILSPEWRILRTLLRIFLLFCFKIQI CCCEEEECCCCCCCHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA