| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227218
Identifier: 21227218
GI number: 21227218
Start: 1308231
End: 1309862
Strand: Reverse
Name: 21227218
Synonym: MM_1116
Alternate gene names: NA
Gene position: 1309862-1308231 (Counterclockwise)
Preceding gene: 21227219
Following gene: 21227215
Centisome position: 31.98
GC content: 42.1
Gene sequence:
>1632_bases GTGCTTCTTGCGTACAGAAAGATCAGTGCGGTTTTCACACTGATGCTTGTTCATATTACCGTAATGATAATCCCTTACAT GCTCGGTTACGCTTCAGTAGGCAGAGGAGACGAATTTTTATATCCGGGACTGGCAATAAGCACTGGAATTTCAGGAGCTT CGTGCCCGTCAACCTATTCAGATCTTTCCCCTACAGGGCCTCTCCTGGTCTCAACTCTGGGCCTTATTTCAGGCATGAGG GCACAGGTATTATCTCACTTTTTACCGGTAGTCTTTTCTATCGCATTTATTACCGGTATGTTTCTGTTCTATCGTGGTTT TATGAGCCGGGAAAAACTGGTTTCAGTAACCTTTATTTCTTCGATTATCCCATATTTCGGGCATTTTCAGGTATCAACGG TTTCATATTACCTTATTTTTTGCCTGGTTCCTCTCTATCTCCTTTTACTCTGGAATGCGATATCCCATAAAAACAGGTTG GCAATGGTTGTCTGTTTACTCTTTATGATACCTTTGCTTCCGCTAGCTCATCCCTTTATTTTTACTTATCTGCTGTGTTT CGCTTTGCTGCTCACTTTTGCAGGTAAAGCCATGCAGTCAGGTCTCCTCAAAAAAATTATTAGCTTTAAAAATCTTGCTC GAGACCCTCTCTCCAGCTCTTCAGGAAAAATAGTTCCTCTATTTCTATTCCTGTCGTTTACTTCAGGCAGTCTCCTTATC TATGCAAGGTACGCATCAGGGGTTTTTGATGTTTTCCTTCCGGATATTGTCTGGCGTTTTGAGACCCTTGTAGCTGCAGG TTTTGCTACAATTCCAAGCATGGAACCCGGGGTCTTTAAGTTTATACACCTTTTCAATCTTTACTATGGGAAGTATTACA TCCCCTTAATTTTTGTTATTATTAATACAATAATCGTATGGCAGAACCGTAAACGTTTTTGTCAGCACTTTGTCCGCAGG TATCCTCGCTTTTTACTCCTGTATATAGCCTCTTTCTTCCTGGAACTCTGCTTTCTCCTGAATCCCTTCATACCCTATCC TCCTGATAGGTTTGCAAACCTGAGTTTCATTATATTTGCCCAGATTCCTTTGCTTGGGTACTCTGTATATATCGTCCTTC TCAGGAAGGGATATCCAATAGGCCTTGGAGCTGCAATTCTTGTACTGGGATTCGTATGGACTTTAGGGTTTTTCAGCTGT TTCAGTTCCCCATATGCCGGTGGATTCTCGGAGGCCATCCCGCAGAATGAGGTGGAAGGAGTGCAGTGGCTGGTAGAAAC AAAATCAGAATATCCGTATTTTGTATCTTTCAGCGAAAAAGAAAATTATGCATTTTCAGAAAAATCTTCTGACAACATAG CGCAGTTTGATGCCTTTTCCGGAGCTTCCGACAATTCCGGGCCAGCTCCTGTGAGCCTCTCTGAAAATTTAATGCCTCTG GAGAGTACCACTGCAAACGAACCTTTTTACCTTATAGTGACATCGTTTTCGGAGGCTATAGGTCTGGAAATCTCAGGAAA ACCCGAAATGGAATCTTCTTCAGTTGAAAGAGACCCTGAAACTCAAAAAGACAGACCTCTGTACAAGATATACGATTCCC TTGACATAAAAATTTACAAGCATACTCCCTGA
Upstream 100 bases:
>100_bases CAGAGAAATCCAGCCTGAAGGATATATTGTCAATATCTATGAACAGCTTCCCTTCCGTTTTTATATGATTTTGCTTTTCT GTTACTTCTCCGGATGCTTT
Downstream 100 bases:
>100_bases ATTTGCTTTTTTCTCGCCCGAATTGCGCCTCGGGAGTACGCGGTCCTTTCCACTCCCCGAATTGCGCCTCGGGAGTACGC GGTCCTTTCCACTCCCCGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 543; Mature: 543
Protein sequence:
>543_residues MLLAYRKISAVFTLMLVHITVMIIPYMLGYASVGRGDEFLYPGLAISTGISGASCPSTYSDLSPTGPLLVSTLGLISGMR AQVLSHFLPVVFSIAFITGMFLFYRGFMSREKLVSVTFISSIIPYFGHFQVSTVSYYLIFCLVPLYLLLLWNAISHKNRL AMVVCLLFMIPLLPLAHPFIFTYLLCFALLLTFAGKAMQSGLLKKIISFKNLARDPLSSSSGKIVPLFLFLSFTSGSLLI YARYASGVFDVFLPDIVWRFETLVAAGFATIPSMEPGVFKFIHLFNLYYGKYYIPLIFVIINTIIVWQNRKRFCQHFVRR YPRFLLLYIASFFLELCFLLNPFIPYPPDRFANLSFIIFAQIPLLGYSVYIVLLRKGYPIGLGAAILVLGFVWTLGFFSC FSSPYAGGFSEAIPQNEVEGVQWLVETKSEYPYFVSFSEKENYAFSEKSSDNIAQFDAFSGASDNSGPAPVSLSENLMPL ESTTANEPFYLIVTSFSEAIGLEISGKPEMESSSVERDPETQKDRPLYKIYDSLDIKIYKHTP
Sequences:
>Translated_543_residues MLLAYRKISAVFTLMLVHITVMIIPYMLGYASVGRGDEFLYPGLAISTGISGASCPSTYSDLSPTGPLLVSTLGLISGMR AQVLSHFLPVVFSIAFITGMFLFYRGFMSREKLVSVTFISSIIPYFGHFQVSTVSYYLIFCLVPLYLLLLWNAISHKNRL AMVVCLLFMIPLLPLAHPFIFTYLLCFALLLTFAGKAMQSGLLKKIISFKNLARDPLSSSSGKIVPLFLFLSFTSGSLLI YARYASGVFDVFLPDIVWRFETLVAAGFATIPSMEPGVFKFIHLFNLYYGKYYIPLIFVIINTIIVWQNRKRFCQHFVRR YPRFLLLYIASFFLELCFLLNPFIPYPPDRFANLSFIIFAQIPLLGYSVYIVLLRKGYPIGLGAAILVLGFVWTLGFFSC FSSPYAGGFSEAIPQNEVEGVQWLVETKSEYPYFVSFSEKENYAFSEKSSDNIAQFDAFSGASDNSGPAPVSLSENLMPL ESTTANEPFYLIVTSFSEAIGLEISGKPEMESSSVERDPETQKDRPLYKIYDSLDIKIYKHTP >Mature_543_residues MLLAYRKISAVFTLMLVHITVMIIPYMLGYASVGRGDEFLYPGLAISTGISGASCPSTYSDLSPTGPLLVSTLGLISGMR AQVLSHFLPVVFSIAFITGMFLFYRGFMSREKLVSVTFISSIIPYFGHFQVSTVSYYLIFCLVPLYLLLLWNAISHKNRL AMVVCLLFMIPLLPLAHPFIFTYLLCFALLLTFAGKAMQSGLLKKIISFKNLARDPLSSSSGKIVPLFLFLSFTSGSLLI YARYASGVFDVFLPDIVWRFETLVAAGFATIPSMEPGVFKFIHLFNLYYGKYYIPLIFVIINTIIVWQNRKRFCQHFVRR YPRFLLLYIASFFLELCFLLNPFIPYPPDRFANLSFIIFAQIPLLGYSVYIVLLRKGYPIGLGAAILVLGFVWTLGFFSC FSSPYAGGFSEAIPQNEVEGVQWLVETKSEYPYFVSFSEKENYAFSEKSSDNIAQFDAFSGASDNSGPAPVSLSENLMPL ESTTANEPFYLIVTSFSEAIGLEISGKPEMESSSVERDPETQKDRPLYKIYDSLDIKIYKHTP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61066; Mature: 61066
Theoretical pI: Translated: 8.22; Mature: 8.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLAYRKISAVFTLMLVHITVMIIPYMLGYASVGRGDEFLYPGLAISTGISGASCPSTYS CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHCCCCCCCCCCCCC DLSPTGPLLVSTLGLISGMRAQVLSHFLPVVFSIAFITGMFLFYRGFMSREKLVSVTFIS CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH SIIPYFGHFQVSTVSYYLIFCLVPLYLLLLWNAISHKNRLAMVVCLLFMIPLLPLAHPFI HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH FTYLLCFALLLTFAGKAMQSGLLKKIISFKNLARDPLSSSSGKIVPLFLFLSFTSGSLLI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHEEEHHCCCCEEE YARYASGVFDVFLPDIVWRFETLVAAGFATIPSMEPGVFKFIHLFNLYYGKYYIPLIFVI EEEHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH INTIIVWQNRKRFCQHFVRRYPRFLLLYIASFFLELCFLLNPFIPYPPDRFANLSFIIFA HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE QIPLLGYSVYIVLLRKGYPIGLGAAILVLGFVWTLGFFSCFSSPYAGGFSEAIPQNEVEG HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHH VQWLVETKSEYPYFVSFSEKENYAFSEKSSDNIAQFDAFSGASDNSGPAPVSLSENLMPL HHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC ESTTANEPFYLIVTSFSEAIGLEISGKPEMESSSVERDPETQKDRPLYKIYDSLDIKIYK CCCCCCCCEEEEEECCHHHHCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEE HTP CCC >Mature Secondary Structure MLLAYRKISAVFTLMLVHITVMIIPYMLGYASVGRGDEFLYPGLAISTGISGASCPSTYS CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHCCCCCCCCCCCCC DLSPTGPLLVSTLGLISGMRAQVLSHFLPVVFSIAFITGMFLFYRGFMSREKLVSVTFIS CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH SIIPYFGHFQVSTVSYYLIFCLVPLYLLLLWNAISHKNRLAMVVCLLFMIPLLPLAHPFI HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH FTYLLCFALLLTFAGKAMQSGLLKKIISFKNLARDPLSSSSGKIVPLFLFLSFTSGSLLI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHEEEHHCCCCEEE YARYASGVFDVFLPDIVWRFETLVAAGFATIPSMEPGVFKFIHLFNLYYGKYYIPLIFVI EEEHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH INTIIVWQNRKRFCQHFVRRYPRFLLLYIASFFLELCFLLNPFIPYPPDRFANLSFIIFA HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE QIPLLGYSVYIVLLRKGYPIGLGAAILVLGFVWTLGFFSCFSSPYAGGFSEAIPQNEVEG HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHH VQWLVETKSEYPYFVSFSEKENYAFSEKSSDNIAQFDAFSGASDNSGPAPVSLSENLMPL HHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC ESTTANEPFYLIVTSFSEAIGLEISGKPEMESSSVERDPETQKDRPLYKIYDSLDIKIYK CCCCCCCCEEEEEECCHHHHCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEE HTP CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA