| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227212
Identifier: 21227212
GI number: 21227212
Start: 1303472
End: 1304134
Strand: Reverse
Name: 21227212
Synonym: MM_1110
Alternate gene names: NA
Gene position: 1304134-1303472 (Counterclockwise)
Preceding gene: 21227214
Following gene: 21227211
Centisome position: 31.84
GC content: 47.06
Gene sequence:
>663_bases ATGACCATAATAGGAGTTATCACAAGGGGCAAGTACGGGCACCGCCTTATTGAAACCATAAAGGAACACAGTGACTTCTC GGTTGTAACTGCCGATCTGCCTGAGTTCGTGCCTGCATTCATTGAGGAGCCTGACGAATTCCTGGAAAACCTCAATTTCG ACAGGAATGTCTTTTCTGCCGAGATCGTGATTAGTTATTCCCTTCATCCTGACCTTACTCAGGCAATTGCAAAGCTTGCC GCAGAAGCCGGGGTTCGATCTTTAATTGTTCCTGGAGGACCTTCCAGGGCATCAGTCCCTGAACTTAAAAAGATTTCAGA AATTTCCGGAATGGATATAGAAGTAGACGAAATTTGCTGTACCCTCGAGCCCAACTTATACAATAAGCCCTTTGCTGAGA TTTTCGGGTCTCCTGTTCTGGAAGTCAGGACTGAAAACGGGAAAATCGCTGAAGTTAAGGTTTTAAAAGGAGCTCCCTGC GGGAGTACGTGGCATATGGCAAAGGAAATTGTCGGGGTGCCTGTAAAGGATGCTCCTCCGAAAGCCGGCCTCTTAATCCA GCACTATCCCTGTAGGGCGGCAAGGGGTGACCTTGGAGGTATTCATGAATCAGGAGAATTGCATAAACAGGCGCTGATAA AAGCCCTTGAAAATGAGAAGTGA
Upstream 100 bases:
>100_bases TATCTGTATTTATAGCCTGCAGGAGCCAGTGGCAACTAACAGGACAGTGTTCCGGATAAAATGAGTATCTATTTATGTAA ACATTAAAAATAGCTTAGTA
Downstream 100 bases:
>100_bases TTATATATTCTTTGGAAATATAATCTAAATATGGCAAAAAAAATGGAGTTCATTTTTCAGTTATGAAATTCCTGTTTTTT GCCTGTACTGGTTGCCAAAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 220; Mature: 219
Protein sequence:
>220_residues MTIIGVITRGKYGHRLIETIKEHSDFSVVTADLPEFVPAFIEEPDEFLENLNFDRNVFSAEIVISYSLHPDLTQAIAKLA AEAGVRSLIVPGGPSRASVPELKKISEISGMDIEVDEICCTLEPNLYNKPFAEIFGSPVLEVRTENGKIAEVKVLKGAPC GSTWHMAKEIVGVPVKDAPPKAGLLIQHYPCRAARGDLGGIHESGELHKQALIKALENEK
Sequences:
>Translated_220_residues MTIIGVITRGKYGHRLIETIKEHSDFSVVTADLPEFVPAFIEEPDEFLENLNFDRNVFSAEIVISYSLHPDLTQAIAKLA AEAGVRSLIVPGGPSRASVPELKKISEISGMDIEVDEICCTLEPNLYNKPFAEIFGSPVLEVRTENGKIAEVKVLKGAPC GSTWHMAKEIVGVPVKDAPPKAGLLIQHYPCRAARGDLGGIHESGELHKQALIKALENEK >Mature_219_residues TIIGVITRGKYGHRLIETIKEHSDFSVVTADLPEFVPAFIEEPDEFLENLNFDRNVFSAEIVISYSLHPDLTQAIAKLAA EAGVRSLIVPGGPSRASVPELKKISEISGMDIEVDEICCTLEPNLYNKPFAEIFGSPVLEVRTENGKIAEVKVLKGAPCG STWHMAKEIVGVPVKDAPPKAGLLIQHYPCRAARGDLGGIHESGELHKQALIKALENEK
Specific function: Unknown
COG id: COG1810
COG function: function code S; Uncharacterized protein conserved in archaea
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.jannaschii MJ0838 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003745 - InterPro: IPR016040 [H]
Pfam domain/function: PF02593 DUF166 [H]
EC number: NA
Molecular weight: Translated: 23978; Mature: 23847
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIIGVITRGKYGHRLIETIKEHSDFSVVTADLPEFVPAFIEEPDEFLENLNFDRNVFSA CEEEEEEECCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCHHHHHHHCCCCCCEEEE EIVISYSLHPDLTQAIAKLAAEAGVRSLIVPGGPSRASVPELKKISEISGMDIEVDEICC EEEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCEEHHHEEE TLEPNLYNKPFAEIFGSPVLEVRTENGKIAEVKVLKGAPCGSTWHMAKEIVGVPVKDAPP EECCCCCCCCHHHHHCCCEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCC KAGLLIQHYPCRAARGDLGGIHESGELHKQALIKALENEK CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure TIIGVITRGKYGHRLIETIKEHSDFSVVTADLPEFVPAFIEEPDEFLENLNFDRNVFSA EEEEEEECCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCHHHHHHHCCCCCCEEEE EIVISYSLHPDLTQAIAKLAAEAGVRSLIVPGGPSRASVPELKKISEISGMDIEVDEICC EEEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCEEHHHEEE TLEPNLYNKPFAEIFGSPVLEVRTENGKIAEVKVLKGAPCGSTWHMAKEIVGVPVKDAPP EECCCCCCCCHHHHHCCCEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCC KAGLLIQHYPCRAARGDLGGIHESGELHKQALIKALENEK CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]