Click here to switch to the map view.

The map label for this gene is ychF [C]

Identifier: 21227184

GI number: 21227184

Start: 1274097

End: 1275281

Strand: Direct

Name: ychF [C]

Synonym: MM_1082

Alternate gene names: 21227184

Gene position: 1274097-1275281 (Clockwise)

Preceding gene: 21227182

Following gene: 21227185

Centisome position: 31.1

GC content: 47.43

Gene sequence:

>1185_bases
ATGTCGATGACCATAGGCCTTGCAGGAAAGCCCAATGCGGGCAAATCCACCTTTTTTAAAGCGGCTACCCTTGCAGATGT
TGAGATTGCAAACTATCCTTTCACAACCATAAATGCCAACCACGGCGTCACATATGTCCGGGCGGAATGCCCGTGCAAAG
AGAAAGGAAAAACATGCGGGAAGTGCGTGGACGGGGTCAGGCTTGTTCCTATTGACATTATAGATGTTGCAGGGCTTGTG
CCTGACGCATGTAAAGGCAGAGGGCTTGGAAACACATTCCTGGACGAACTCAGGCAGGCTCAGGCAATAATTCACGTGGT
AGATGCCTCAGGCGGGACGGACGCTGAAGGCAACCCTGTGGATATCGGAGACCACAACCCCCTTGACGACGTGGCTTTCC
TGAACAGGGAAATTACGATGTGGCTTTACGGGATTCTTGAGAGGAACTGGGTCAAGCTTTCCAGAAAAATCCAGGCTGAA
GGGCTCAAGCTTGAAGTGGTAATTTCAGAACAGCTTGCCGGAGCAGGGATAAAGGAATCTCATGTAAACGCCGCCTTGAT
TGAAACAGGGCTTTCAAGGATAGATCATATTAAGTGGACTGAAGAAGACATGATACGCCTCTGCGATACCATGAGGGAGA
TAAGCAAGCCCATGCTTATCGCAGCAAACAAGACTGATATTGCCCCGAGAGAGAACCTGGAAAAACTCAGAGAACTTGAC
AGGATAGTAGTATCTACAAGTGCAGCAGCTGAACTGGTTTTAAGGTCAGCTGCAAAGGCAGGGGTAATAAAATACACCCC
CGGAGATAGAGATTTCGAGCTGCTTACGGAAGAGATTACAAAAGCCCAGAAAAAAGGGCTTGAAGCCATCCATAAGGTAC
TTGAGCGGTTCGGCACTACAGGCATTCAGGAGTGCATTAACAGGACTGTCTTTGAACTTCTGGACCTGATTGTAGTATAT
CCGGTAGAAGATGAAGGGAAATGGTCTGACAAACTTGGAAATATGCTTCCGGATGCTTATCTCATGAAAAAGGGATCTAC
CTGCCACGATCTCGCATACCAGATCCATACAGAAATAGGAGACCGTTTCCTGTACGCAGTGGATGCAAGGACAAGGCTGA
GGCTCGGGGAAAAACATGAACTGAAAAATGGAGATGTAATAAAAATTGTATCTACTGCAAAGTAA

Upstream 100 bases:

>100_bases
TAATTCAATAAGATAACTCTGAAAAAAGAGAGGAAAAACCTTTTTCAAGGGACTTCAATATCAATAAAGATTAAATGCAA
CAAGTTCTTTTTTATAATTT

Downstream 100 bases:

>100_bases
GCCGCGTAGAAAAGACCGGAAAAGCTCATGTCGGAAAAAACTGCCGGGTGAAATAAGAATTAAAAAAACACCGAATTTAA
GGCTTTATTCGGAAGGAATA

Product: translation-associated GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MSMTIGLAGKPNAGKSTFFKAATLADVEIANYPFTTINANHGVTYVRAECPCKEKGKTCGKCVDGVRLVPIDIIDVAGLV
PDACKGRGLGNTFLDELRQAQAIIHVVDASGGTDAEGNPVDIGDHNPLDDVAFLNREITMWLYGILERNWVKLSRKIQAE
GLKLEVVISEQLAGAGIKESHVNAALIETGLSRIDHIKWTEEDMIRLCDTMREISKPMLIAANKTDIAPRENLEKLRELD
RIVVSTSAAAELVLRSAAKAGVIKYTPGDRDFELLTEEITKAQKKGLEAIHKVLERFGTTGIQECINRTVFELLDLIVVY
PVEDEGKWSDKLGNMLPDAYLMKKGSTCHDLAYQIHTEIGDRFLYAVDARTRLRLGEKHELKNGDVIKIVSTAK

Sequences:

>Translated_394_residues
MSMTIGLAGKPNAGKSTFFKAATLADVEIANYPFTTINANHGVTYVRAECPCKEKGKTCGKCVDGVRLVPIDIIDVAGLV
PDACKGRGLGNTFLDELRQAQAIIHVVDASGGTDAEGNPVDIGDHNPLDDVAFLNREITMWLYGILERNWVKLSRKIQAE
GLKLEVVISEQLAGAGIKESHVNAALIETGLSRIDHIKWTEEDMIRLCDTMREISKPMLIAANKTDIAPRENLEKLRELD
RIVVSTSAAAELVLRSAAKAGVIKYTPGDRDFELLTEEITKAQKKGLEAIHKVLERFGTTGIQECINRTVFELLDLIVVY
PVEDEGKWSDKLGNMLPDAYLMKKGSTCHDLAYQIHTEIGDRFLYAVDARTRLRLGEKHELKNGDVIKIVSTAK
>Mature_393_residues
SMTIGLAGKPNAGKSTFFKAATLADVEIANYPFTTINANHGVTYVRAECPCKEKGKTCGKCVDGVRLVPIDIIDVAGLVP
DACKGRGLGNTFLDELRQAQAIIHVVDASGGTDAEGNPVDIGDHNPLDDVAFLNREITMWLYGILERNWVKLSRKIQAEG
LKLEVVISEQLAGAGIKESHVNAALIETGLSRIDHIKWTEEDMIRLCDTMREISKPMLIAANKTDIAPRENLEKLRELDR
IVVSTSAAAELVLRSAAKAGVIKYTPGDRDFELLTEEITKAQKKGLEAIHKVLERFGTTGIQECINRTVFELLDLIVVYP
VEDEGKWSDKLGNMLPDAYLMKKGSTCHDLAYQIHTEIGDRFLYAVDARTRLRLGEKHELKNGDVIKIVSTAK

Specific function: Unknown

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=323, Percent_Identity=26.0061919504644, Blast_Score=73, Evalue=6e-13,
Organism=Escherichia coli, GI1787454, Length=271, Percent_Identity=29.8892988929889, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1789574, Length=104, Percent_Identity=32.6923076923077, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17552324, Length=139, Percent_Identity=34.5323741007194, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17509631, Length=139, Percent_Identity=29.4964028776978, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6321649, Length=372, Percent_Identity=36.2903225806452, Blast_Score=197, Evalue=3e-51,
Organism=Saccharomyces cerevisiae, GI6321773, Length=390, Percent_Identity=25.6410256410256, Blast_Score=77, Evalue=6e-15,
Organism=Saccharomyces cerevisiae, GI6319499, Length=403, Percent_Identity=25.3101736972705, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24640873, Length=164, Percent_Identity=31.7073170731707, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24640877, Length=164, Percent_Identity=31.7073170731707, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24640875, Length=164, Percent_Identity=31.7073170731707, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24585318, Length=157, Percent_Identity=31.2101910828025, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR006073
- InterPro:   IPR013646
- InterPro:   IPR002917
- InterPro:   IPR004095
- InterPro:   IPR012676 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF08438 MMR_HSR1_C; PF02824 TGS [H]

EC number: NA

Molecular weight: Translated: 43396; Mature: 43264

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMTIGLAGKPNAGKSTFFKAATLADVEIANYPFTTINANHGVTYVRAECPCKEKGKTCG
CCEEEECCCCCCCCCHHHHHHHHEEEEEECCCCEEEEECCCCEEEEEECCCCHHHCCHHH
KCVDGVRLVPIDIIDVAGLVPDACKGRGLGNTFLDELRQAQAIIHVVDASGGTDAEGNPV
HHHCCCEEEEEHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHEEEEEECCCCCCCCCCCE
DIGDHNPLDDVAFLNREITMWLYGILERNWVKLSRKIQAEGLKLEVVISEQLAGAGIKES
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECHHCCCCCCHH
HVNAALIETGLSRIDHIKWTEEDMIRLCDTMREISKPMLIAANKTDIAPRENLEKLRELD
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHH
RIVVSTSAAAELVLRSAAKAGVIKYTPGDRDFELLTEEITKAQKKGLEAIHKVLERFGTT
HHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
GIQECINRTVFELLDLIVVYPVEDEGKWSDKLGNMLPDAYLMKKGSTCHDLAYQIHTEIG
HHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHC
DRFLYAVDARTRLRLGEKHELKNGDVIKIVSTAK
CEEEEEECCHHHHCCCCCCCCCCCCEEEEEECCC
>Mature Secondary Structure 
SMTIGLAGKPNAGKSTFFKAATLADVEIANYPFTTINANHGVTYVRAECPCKEKGKTCG
CEEEECCCCCCCCCHHHHHHHHEEEEEECCCCEEEEECCCCEEEEEECCCCHHHCCHHH
KCVDGVRLVPIDIIDVAGLVPDACKGRGLGNTFLDELRQAQAIIHVVDASGGTDAEGNPV
HHHCCCEEEEEHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHEEEEEECCCCCCCCCCCE
DIGDHNPLDDVAFLNREITMWLYGILERNWVKLSRKIQAEGLKLEVVISEQLAGAGIKES
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECHHCCCCCCHH
HVNAALIETGLSRIDHIKWTEEDMIRLCDTMREISKPMLIAANKTDIAPRENLEKLRELD
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHH
RIVVSTSAAAELVLRSAAKAGVIKYTPGDRDFELLTEEITKAQKKGLEAIHKVLERFGTT
HHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
GIQECINRTVFELLDLIVVYPVEDEGKWSDKLGNMLPDAYLMKKGSTCHDLAYQIHTEIG
HHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHC
DRFLYAVDARTRLRLGEKHELKNGDVIKIVSTAK
CEEEEEECCHHHHCCCCCCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]