| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227143
Identifier: 21227143
GI number: 21227143
Start: 1216864
End: 1218231
Strand: Direct
Name: 21227143
Synonym: MM_1041
Alternate gene names: NA
Gene position: 1216864-1218231 (Clockwise)
Preceding gene: 21227142
Following gene: 21227144
Centisome position: 29.71
GC content: 47.51
Gene sequence:
>1368_bases TTGAGTACTGATATATTCAGTTCCATCCCGGAACTGATTTCGGGCATCCTCATATCTTCATGGGAAATCTTTGTAGAAGC TGCTCCTTACCTTATTTTCGGATTTGCAATCGCAGGCATCCTCAATGTCCTTGTGCCGGATCAGAAAATTGTAGAATATC TTGGAACATCAGCAGGAAAAATCCGTTCCGTAATCAATGCCGCTCTGGCAGGGCTTCCCCTTCCTCTCTGCTCCTGCGGA GTTATCCCGGCAGCAATGTCCATAAGGAAAAGAGGAGCAAACCGGGGTGCGACCCTTTCCTTCCTGATTTCAACTCCTCA GACAGGAATGGACTCTATTTCTATCACGTACGCCCTCCTTGACCCTCTGATGGCTGTTTTTCGCCCGCTTGCGACCCTTG CAACCGCAATCCTTGCAGGGATTGCAGATAACCTGCTGATAGGGGAGGATCCGGAAAAAAGCGGAAAAAGTGAAAATGAG AAAGCCGGAAAGAAAGCTGAAATCCTTGCTGTCTCAACTCTTGTTGGCGTATCAGTAAGCGGAGATAAATGCAGTCCCGT TTCATGCAACTGCGGAACACATGAAGCAACAGAAACGGGAAAAGAGAAACATCCTGACAAGAATACTGTGCCTTTAAAGT CCGGAACTCTGGAATTAAAGTCCGAGACCGGAAGAGAGACTTCACATCTTAAAATTACGCCTGCAATTCATGCTTCTGAA AATAACACCCCTTCATGTGGCTGCGGACACTGTGGAGAGGGGAAAAGAGAACAGTTCTCTGACAAAAGGGTTAAAAAGTC CATAAAAGAAGACATTCTGGAATGCCTGAAATATGCCTTCATAGAACTTCCGGGAGAAATTGCCAAATGGATGCTTATAG GTATTCTGCTTGCAGGAATAATTTCCTACGCTATTCCCGAAACCCTGGTCCAGGAATACCTTGGTGGTGGTTTCAGTTCA ATGCTGGTCATGCTTGTAATAGGCATCCCGCTTTACATCTGCGCTACCGCTTCAACTCCTCTTGCAGCAAGCCTGGTAGC CAAAGGGATGAGTCCTGGCACAGCTTTTGTTTTCCTGCTTGCAGGACCTGCAACCAATGCGGCAACCATAACCATGGTCG CCCGGTTTCTGGGGAAACGTTCCGCAGTCCTTTATGTTGGAGTAATCTCACTCTGTGCCATTGGAGCAGGAATCCTTCTT GACTGGCTTTACTTCAAACTGGGAATAAGCGTTACTGCAACCCTTGGAAGTGCAGAAGAAATGCTCCCTGAGAGTATTAA GCTCGGTTTTGCGGTCCTTCTTCTCCCTCTAATGCTGTACGGAATTTTCCGAAGGAACCATGGGCGCGGCTGCACCGAAT GTCACTGA
Upstream 100 bases:
>100_bases TAAGGGTCAGGAGGGAAGGAAAATTTACAGTTTACTATATTGCAGATGAACATGTACGCACACTTATCGAGATGTGCCTT GAGCACGTGGAGGAAAAAGC
Downstream 100 bases:
>100_bases AAAAAGAAGCAGAGCAGCAATAACTTAGCAAGGACAGTTAAAGAATTAATAAGTACCAGATAATATAAATCCTCCTAAAT AGAATAAACAATATGCAGGA
Product: transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 455; Mature: 454
Protein sequence:
>455_residues MSTDIFSSIPELISGILISSWEIFVEAAPYLIFGFAIAGILNVLVPDQKIVEYLGTSAGKIRSVINAALAGLPLPLCSCG VIPAAMSIRKRGANRGATLSFLISTPQTGMDSISITYALLDPLMAVFRPLATLATAILAGIADNLLIGEDPEKSGKSENE KAGKKAEILAVSTLVGVSVSGDKCSPVSCNCGTHEATETGKEKHPDKNTVPLKSGTLELKSETGRETSHLKITPAIHASE NNTPSCGCGHCGEGKREQFSDKRVKKSIKEDILECLKYAFIELPGEIAKWMLIGILLAGIISYAIPETLVQEYLGGGFSS MLVMLVIGIPLYICATASTPLAASLVAKGMSPGTAFVFLLAGPATNAATITMVARFLGKRSAVLYVGVISLCAIGAGILL DWLYFKLGISVTATLGSAEEMLPESIKLGFAVLLLPLMLYGIFRRNHGRGCTECH
Sequences:
>Translated_455_residues MSTDIFSSIPELISGILISSWEIFVEAAPYLIFGFAIAGILNVLVPDQKIVEYLGTSAGKIRSVINAALAGLPLPLCSCG VIPAAMSIRKRGANRGATLSFLISTPQTGMDSISITYALLDPLMAVFRPLATLATAILAGIADNLLIGEDPEKSGKSENE KAGKKAEILAVSTLVGVSVSGDKCSPVSCNCGTHEATETGKEKHPDKNTVPLKSGTLELKSETGRETSHLKITPAIHASE NNTPSCGCGHCGEGKREQFSDKRVKKSIKEDILECLKYAFIELPGEIAKWMLIGILLAGIISYAIPETLVQEYLGGGFSS MLVMLVIGIPLYICATASTPLAASLVAKGMSPGTAFVFLLAGPATNAATITMVARFLGKRSAVLYVGVISLCAIGAGILL DWLYFKLGISVTATLGSAEEMLPESIKLGFAVLLLPLMLYGIFRRNHGRGCTECH >Mature_454_residues STDIFSSIPELISGILISSWEIFVEAAPYLIFGFAIAGILNVLVPDQKIVEYLGTSAGKIRSVINAALAGLPLPLCSCGV IPAAMSIRKRGANRGATLSFLISTPQTGMDSISITYALLDPLMAVFRPLATLATAILAGIADNLLIGEDPEKSGKSENEK AGKKAEILAVSTLVGVSVSGDKCSPVSCNCGTHEATETGKEKHPDKNTVPLKSGTLELKSETGRETSHLKITPAIHASEN NTPSCGCGHCGEGKREQFSDKRVKKSIKEDILECLKYAFIELPGEIAKWMLIGILLAGIISYAIPETLVQEYLGGGFSSM LVMLVIGIPLYICATASTPLAASLVAKGMSPGTAFVFLLAGPATNAATITMVARFLGKRSAVLYVGVISLCAIGAGILLD WLYFKLGISVTATLGSAEEMLPESIKLGFAVLLLPLMLYGIFRRNHGRGCTECH
Specific function: Unknown
COG id: COG0701
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0718 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005524 [H]
Pfam domain/function: PF03773 DUF318 [H]
EC number: NA
Molecular weight: Translated: 47981; Mature: 47850
Theoretical pI: Translated: 7.34; Mature: 7.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTDIFSSIPELISGILISSWEIFVEAAPYLIFGFAIAGILNVLVPDQKIVEYLGTSAGK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHH IRSVINAALAGLPLPLCSCGVIPAAMSIRKRGANRGATLSFLISTPQTGMDSISITYALL HHHHHHHHHHCCCCHHHHCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHH DPLMAVFRPLATLATAILAGIADNLLIGEDPEKSGKSENEKAGKKAEILAVSTLVGVSVS HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCHHHHEEEHHHHEEEEC GDKCSPVSCNCGTHEATETGKEKHPDKNTVPLKSGTLELKSETGRETSHLKITPAIHASE CCCCCCCCCCCCCCHHHHCCHHCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEEEECCC NNTPSCGCGHCGEGKREQFSDKRVKKSIKEDILECLKYAFIELPGEIAKWMLIGILLAGI CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH ISYAIPETLVQEYLGGGFSSMLVMLVIGIPLYICATASTPLAASLVAKGMSPGTAFVFLL HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEE AGPATNAATITMVARFLGKRSAVLYVGVISLCAIGAGILLDWLYFKLGISVTATLGSAEE ECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCHHH MLPESIKLGFAVLLLPLMLYGIFRRNHGRGCTECH HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure STDIFSSIPELISGILISSWEIFVEAAPYLIFGFAIAGILNVLVPDQKIVEYLGTSAGK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHH IRSVINAALAGLPLPLCSCGVIPAAMSIRKRGANRGATLSFLISTPQTGMDSISITYALL HHHHHHHHHHCCCCHHHHCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHH DPLMAVFRPLATLATAILAGIADNLLIGEDPEKSGKSENEKAGKKAEILAVSTLVGVSVS HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCHHHHEEEHHHHEEEEC GDKCSPVSCNCGTHEATETGKEKHPDKNTVPLKSGTLELKSETGRETSHLKITPAIHASE CCCCCCCCCCCCCCHHHHCCHHCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEEEECCC NNTPSCGCGHCGEGKREQFSDKRVKKSIKEDILECLKYAFIELPGEIAKWMLIGILLAGI CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH ISYAIPETLVQEYLGGGFSSMLVMLVIGIPLYICATASTPLAASLVAKGMSPGTAFVFLL HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEE AGPATNAATITMVARFLGKRSAVLYVGVISLCAIGAGILLDWLYFKLGISVTATLGSAEE ECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCHHH MLPESIKLGFAVLLLPLMLYGIFRRNHGRGCTECH HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]