| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227011
Identifier: 21227011
GI number: 21227011
Start: 1075602
End: 1076495
Strand: Direct
Name: 21227011
Synonym: MM_0909
Alternate gene names: NA
Gene position: 1075602-1076495 (Clockwise)
Preceding gene: 21227007
Following gene: 21227012
Centisome position: 26.26
GC content: 42.73
Gene sequence:
>894_bases TTGAGTTCCAGCGAAAATTCACTCAAAGATTATTTACCAATCCTCTCCATGGCAGGACTAATATTAATAGTACAGATTCT TTCCCTGCTCCTGTCCACGCCAATGGAAACGAATGAAATGCAGGCTTTTGAAGATCCCACGCAGGTTTCCAACTCAATAT ATTATATCGTAATGATCCTGACTTTTACGCTTTTTGTTCTGATAGCTATAAAGAAAAACATGAAATGGGTCATCAGCTTA CTGATATATCTCGCTATATTAAGCACTCTATACTATGTATTTTTCGCACTTTTAACCCTGATTCCTTCACTCGCAGGCCT TGAAAATATAATTTCAATCCTGCTGTCTACCGGATTAACATTACTGCTCTACAAATACCCGGAATGGTATGTAATCGATA TCCTGGGAGTCTGCATAGCAGCTGGAGTCAGTGCCCTGATAGGGATTTCCCTTTCCGTTATCCCGGTAGTAGTCCTTCTG ATACTTCTTGCGGTCTATGATGCTATCTCGGTGTACAAAACAAAACACATGATAACTATGGCTGAGGGTGTGATGGACCT TAAACTCCCCATTCTATTCATAATTCCAAAACATCGGGACTATTCATTTATTAAAGAGAGTTTTAAAGAAGGAGAAACTC GTGAAGCTTTTTTCATGGGGCTTGGTGACGCGGTCATGCCCAGTTTGCTTGTAGTTTCCGCAAATGTATTCATTGAAAAC GGAGGCATCTCATATCCGGTACTCGGGGCAATGCTGGGGACTCTTGCAGGGCATGTGATCCTGTCTATCCTGGTGATGAG AGGAAAACCCCAGGCAGGGCTCCCCTTCCTGAATTCCGGAGCAATTCTGGGCTTTTTTGCAGGGGTTTTGCTTTCGGGAG CATCAATTCTGTGA
Upstream 100 bases:
>100_bases ACAGTATATAATAGAGAGGATAAAAATTGAAGATAGAGGATAGAGTAAATATATAAAGGAATAGAAAAAGCATACTGTCA AGAAATAAGGAGTTTAATAA
Downstream 100 bases:
>100_bases AGAAAGAAAAAGGAAGGTTTAACTTTACTACTTCATTTATTTTTATAAAATTCCTTTTTCCGCCTGTTTTTTTCTGTTTT CACAAAGATTTTTTTATTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 297; Mature: 296
Protein sequence:
>297_residues MSSSENSLKDYLPILSMAGLILIVQILSLLLSTPMETNEMQAFEDPTQVSNSIYYIVMILTFTLFVLIAIKKNMKWVISL LIYLAILSTLYYVFFALLTLIPSLAGLENIISILLSTGLTLLLYKYPEWYVIDILGVCIAAGVSALIGISLSVIPVVVLL ILLAVYDAISVYKTKHMITMAEGVMDLKLPILFIIPKHRDYSFIKESFKEGETREAFFMGLGDAVMPSLLVVSANVFIEN GGISYPVLGAMLGTLAGHVILSILVMRGKPQAGLPFLNSGAILGFFAGVLLSGASIL
Sequences:
>Translated_297_residues MSSSENSLKDYLPILSMAGLILIVQILSLLLSTPMETNEMQAFEDPTQVSNSIYYIVMILTFTLFVLIAIKKNMKWVISL LIYLAILSTLYYVFFALLTLIPSLAGLENIISILLSTGLTLLLYKYPEWYVIDILGVCIAAGVSALIGISLSVIPVVVLL ILLAVYDAISVYKTKHMITMAEGVMDLKLPILFIIPKHRDYSFIKESFKEGETREAFFMGLGDAVMPSLLVVSANVFIEN GGISYPVLGAMLGTLAGHVILSILVMRGKPQAGLPFLNSGAILGFFAGVLLSGASIL >Mature_296_residues SSSENSLKDYLPILSMAGLILIVQILSLLLSTPMETNEMQAFEDPTQVSNSIYYIVMILTFTLFVLIAIKKNMKWVISLL IYLAILSTLYYVFFALLTLIPSLAGLENIISILLSTGLTLLLYKYPEWYVIDILGVCIAAGVSALIGISLSVIPVVVLLI LLAVYDAISVYKTKHMITMAEGVMDLKLPILFIIPKHRDYSFIKESFKEGETREAFFMGLGDAVMPSLLVVSANVFIENG GISYPVLGAMLGTLAGHVILSILVMRGKPQAGLPFLNSGAILGFFAGVLLSGASIL
Specific function: Unknown
COG id: COG3389
COG function: function code S; Uncharacterized protein conserved in archaea
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32326; Mature: 32194
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSSENSLKDYLPILSMAGLILIVQILSLLLSTPMETNEMQAFEDPTQVSNSIYYIVMIL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHH TFTLFVLIAIKKNMKWVISLLIYLAILSTLYYVFFALLTLIPSLAGLENIISILLSTGLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH LLLYKYPEWYVIDILGVCIAAGVSALIGISLSVIPVVVLLILLAVYDAISVYKTKHMITM HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AEGVMDLKLPILFIIPKHRDYSFIKESFKEGETREAFFMGLGDAVMPSLLVVSANVFIEN HHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHEEEC GGISYPVLGAMLGTLAGHVILSILVMRGKPQAGLPFLNSGAILGFFAGVLLSGASIL CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC >Mature Secondary Structure SSSENSLKDYLPILSMAGLILIVQILSLLLSTPMETNEMQAFEDPTQVSNSIYYIVMIL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHH TFTLFVLIAIKKNMKWVISLLIYLAILSTLYYVFFALLTLIPSLAGLENIISILLSTGLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH LLLYKYPEWYVIDILGVCIAAGVSALIGISLSVIPVVVLLILLAVYDAISVYKTKHMITM HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AEGVMDLKLPILFIIPKHRDYSFIKESFKEGETREAFFMGLGDAVMPSLLVVSANVFIEN HHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHEEEC GGISYPVLGAMLGTLAGHVILSILVMRGKPQAGLPFLNSGAILGFFAGVLLSGASIL CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA