| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21226941
Identifier: 21226941
GI number: 21226941
Start: 992939
End: 995101
Strand: Direct
Name: 21226941
Synonym: MM_0839
Alternate gene names: NA
Gene position: 992939-995101 (Clockwise)
Preceding gene: 21226939
Following gene: 21226942
Centisome position: 24.24
GC content: 42.39
Gene sequence:
>2163_bases GTGTCAGAATATCTGCATATAATTATATGGTTTTTTCTTATAGAAGCCCTGAGCTTTATTTCGGTTCCATTCATAAGAAG TGCAGGAAACCGGCTTGCTGACGGAGGATATTCTGTTTCCAGAGCCCTCGGAATTATGCTTGTTACCTATCTTTCCTGGA TTTTTTCGTATATACTGGGTTTCAGCTTTACAGCTGTCCTGATTGCATTTTTCCTTCTCTGCTCCGTATCCATTTTCCTT TACAGGAAACAGAAATTTTTTCCGGGCAGGAAAGTTCTTGTAGTAAACGAACTGGTATTTGCATCAGGCTTCTTTTTTTT TCTGCTTGTACGCACTTATCTGCCCGAGATATATAGACATGAAAAATTCATGGACTTTGCATTTTTAAATGCAGTAATAA GGGCCAGCTCCTTTCCCCCTCAGGACCCATGGTTTGCAGGCGGGCTCATGGATTTTTATTACTATTTCGGGTATCTCTCA GTAGCCGTATTTGGAAAACTCAGTGCAGTAAAACCTTCCATTCTTTTTAACCTGGCAGTCGCGCTGACTTTTGCCCTGTC CCTGAACGCATTTTTCGGCATGGGATATAACCTTACACGTGGAAAAATCAGGTATGGAATATTGACTGCAGTTTTTGGGA TGCTTCTTGGAAACCTGCAGGGGCTCATAGAATTTGTATCGGTGTACATCAGGCATGAGCAGGCCCTGGGAGGATACTAC TGGAGCAGCTCAAGAGTCATCCCTTTTACAATAAACGAATTCCCGTACTTCAGCTTCATACACGGCGACCTTCACTCCCA TATGCTTGCAATCCCTTTTCAGCTTCTTGTACTTGCGTTTCTCCTGAATATGCATTTCAGGAAAAATGAGGACTCAATAT TTGAAAACAGCCTTGCACTTCTTATGTTTTCAATGTCTCTGGGTTTTTTATTCCCATTCAACTCCTGGGACTTTCCTGTA TACTTCGGTCTGGCATTTCTTGTTATTTTTGCATTCTACTGCGGGGATTATGTCCATAATAGAAATTTATTCGCTGCTGT TGCAAAATTTTCCAATTCGATGATCTTTATTTCCATTTTCAGTTTCCTTCCCTATTTGCTTTTTTACCTGGATTTTAATC CTCAGGCAGCAGGAGGGTTTGATTTCGTCCTGCCTGAGTTAAGGACGGAGACTGATAGATTCCTGATTCTTTTCGGGCTT TTTCTCTTCCTGGTATTTTCATTCCTTATCACCCGCCTGGACTCCAGAAGGAAAATAGTATTTTTTGTCCTGCTTGCAGG GGTTTCAGCATTGCTTTCAAAAGCATGGTCTATTCCCCTGCTTGCAGTCCTTTTGCCTGTGTTTGTTTTTTCCCTGCTTC TATTCCTTAAGGATATTCCTGAGCGGAGCGCGTCAGGGTTTGTATATCTCCTGATATCAGCAGCTAGCTTTATCGCTCTC CTCTGCGAGGTTATTTTCCTTGACGACCCCATTTCCGGGGAGTTTGCCCGTATGAACACGGTTTTCAAATTTTATATGCA CCTGTGGATCTTTCTTGCTATTTCAGCTGCTTATTCATATTATGACCTTAATTCCCATTACGCGGCCAGATCCGGAAACA GAAAAACTTTGAAGCAGTTTGTAAAAAAAGGATGGTCAGTTATTCTTGTGATCCTGATAATCTGCTGCGCCATTTTTCCT GCAGTATCGACCGTTACAAGAATAAAAGAGATGAATGCCGAACCTTCCCTTGACGGGATGGAGTACATGCGGGAACTGGA CAGGGGAGACTACAACGCCATAAGGTGGATGCAGGCGAATATCAAAGGCTCGCCTGTAATTCTCGAAACCTCGGAAGATG ACAGCAGCTACAGTTATGCCTGCCGCGTCTCTTCAAACACGGGGATTCCTGCGGTCATAGGATGGGCAAGGCATGAGAGG TTCTGGGGAAGAGACCATGAAGAAGTGAAAAAGAGGATAGGAGACGTCAGCCTGATTTATTCAACGGGCAGTGAAGAGGA AGCAATTGAGCTTATAGAAAAATATAACGTAACCTATGTATATATCGGAACTCTTGAAAGGCAGGTATATGACGTAAATA CGAAAAAATTCGAAAATAAAGCCTATTTCGAACCTGTTTACGAGGGTTCAGCCACAATATATAAATTGAAAAAAAAACCG TAA
Upstream 100 bases:
>100_bases TGGGGCTTCAGAATAAAGCAGAAATAAGAACTGAATTTGCCAGTAAACTGAAGGTGGGCTTCAACTGAAAGGCTTCTTTT TACATGCAGGGGAGGGGACA
Downstream 100 bases:
>100_bases AAAAGATGTTATGAATTTCCACTTTTAGAAAAAAATACGGCTAAGATAAAAAACGAATTTTAGATAAATGTATCATTAAT TTCAATATCTGAACATTGTT
Product: hypothetical protein
Products: NA
Alternate protein names: TPR Repeat-Containing Protein; Chlor_arch_yyy Domain; Glycosyl Transferase Family; Tetratricopeptide Repeat-Containing Protein
Number of amino acids: Translated: 720; Mature: 719
Protein sequence:
>720_residues MSEYLHIIIWFFLIEALSFISVPFIRSAGNRLADGGYSVSRALGIMLVTYLSWIFSYILGFSFTAVLIAFFLLCSVSIFL YRKQKFFPGRKVLVVNELVFASGFFFFLLVRTYLPEIYRHEKFMDFAFLNAVIRASSFPPQDPWFAGGLMDFYYYFGYLS VAVFGKLSAVKPSILFNLAVALTFALSLNAFFGMGYNLTRGKIRYGILTAVFGMLLGNLQGLIEFVSVYIRHEQALGGYY WSSSRVIPFTINEFPYFSFIHGDLHSHMLAIPFQLLVLAFLLNMHFRKNEDSIFENSLALLMFSMSLGFLFPFNSWDFPV YFGLAFLVIFAFYCGDYVHNRNLFAAVAKFSNSMIFISIFSFLPYLLFYLDFNPQAAGGFDFVLPELRTETDRFLILFGL FLFLVFSFLITRLDSRRKIVFFVLLAGVSALLSKAWSIPLLAVLLPVFVFSLLLFLKDIPERSASGFVYLLISAASFIAL LCEVIFLDDPISGEFARMNTVFKFYMHLWIFLAISAAYSYYDLNSHYAARSGNRKTLKQFVKKGWSVILVILIICCAIFP AVSTVTRIKEMNAEPSLDGMEYMRELDRGDYNAIRWMQANIKGSPVILETSEDDSSYSYACRVSSNTGIPAVIGWARHER FWGRDHEEVKKRIGDVSLIYSTGSEEEAIELIEKYNVTYVYIGTLERQVYDVNTKKFENKAYFEPVYEGSATIYKLKKKP
Sequences:
>Translated_720_residues MSEYLHIIIWFFLIEALSFISVPFIRSAGNRLADGGYSVSRALGIMLVTYLSWIFSYILGFSFTAVLIAFFLLCSVSIFL YRKQKFFPGRKVLVVNELVFASGFFFFLLVRTYLPEIYRHEKFMDFAFLNAVIRASSFPPQDPWFAGGLMDFYYYFGYLS VAVFGKLSAVKPSILFNLAVALTFALSLNAFFGMGYNLTRGKIRYGILTAVFGMLLGNLQGLIEFVSVYIRHEQALGGYY WSSSRVIPFTINEFPYFSFIHGDLHSHMLAIPFQLLVLAFLLNMHFRKNEDSIFENSLALLMFSMSLGFLFPFNSWDFPV YFGLAFLVIFAFYCGDYVHNRNLFAAVAKFSNSMIFISIFSFLPYLLFYLDFNPQAAGGFDFVLPELRTETDRFLILFGL FLFLVFSFLITRLDSRRKIVFFVLLAGVSALLSKAWSIPLLAVLLPVFVFSLLLFLKDIPERSASGFVYLLISAASFIAL LCEVIFLDDPISGEFARMNTVFKFYMHLWIFLAISAAYSYYDLNSHYAARSGNRKTLKQFVKKGWSVILVILIICCAIFP AVSTVTRIKEMNAEPSLDGMEYMRELDRGDYNAIRWMQANIKGSPVILETSEDDSSYSYACRVSSNTGIPAVIGWARHER FWGRDHEEVKKRIGDVSLIYSTGSEEEAIELIEKYNVTYVYIGTLERQVYDVNTKKFENKAYFEPVYEGSATIYKLKKKP >Mature_719_residues SEYLHIIIWFFLIEALSFISVPFIRSAGNRLADGGYSVSRALGIMLVTYLSWIFSYILGFSFTAVLIAFFLLCSVSIFLY RKQKFFPGRKVLVVNELVFASGFFFFLLVRTYLPEIYRHEKFMDFAFLNAVIRASSFPPQDPWFAGGLMDFYYYFGYLSV AVFGKLSAVKPSILFNLAVALTFALSLNAFFGMGYNLTRGKIRYGILTAVFGMLLGNLQGLIEFVSVYIRHEQALGGYYW SSSRVIPFTINEFPYFSFIHGDLHSHMLAIPFQLLVLAFLLNMHFRKNEDSIFENSLALLMFSMSLGFLFPFNSWDFPVY FGLAFLVIFAFYCGDYVHNRNLFAAVAKFSNSMIFISIFSFLPYLLFYLDFNPQAAGGFDFVLPELRTETDRFLILFGLF LFLVFSFLITRLDSRRKIVFFVLLAGVSALLSKAWSIPLLAVLLPVFVFSLLLFLKDIPERSASGFVYLLISAASFIALL CEVIFLDDPISGEFARMNTVFKFYMHLWIFLAISAAYSYYDLNSHYAARSGNRKTLKQFVKKGWSVILVILIICCAIFPA VSTVTRIKEMNAEPSLDGMEYMRELDRGDYNAIRWMQANIKGSPVILETSEDDSSYSYACRVSSNTGIPAVIGWARHERF WGRDHEEVKKRIGDVSLIYSTGSEEEAIELIEKYNVTYVYIGTLERQVYDVNTKKFENKAYFEPVYEGSATIYKLKKKP
Specific function: Unknown
COG id: COG5427
COG function: function code S; Uncharacterized membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 82540; Mature: 82408
Theoretical pI: Translated: 8.58; Mature: 8.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEYLHIIIWFFLIEALSFISVPFIRSAGNRLADGGYSVSRALGIMLVTYLSWIFSYILG CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH FSFTAVLIAFFLLCSVSIFLYRKQKFFPGRKVLVVNELVFASGFFFFLLVRTYLPEIYRH HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH EKFMDFAFLNAVIRASSFPPQDPWFAGGLMDFYYYFGYLSVAVFGKLSAVKPSILFNLAV HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH ALTFALSLNAFFGMGYNLTRGKIRYGILTAVFGMLLGNLQGLIEFVSVYIRHEQALGGYY HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE WSSSRVIPFTINEFPYFSFIHGDLHSHMLAIPFQLLVLAFLLNMHFRKNEDSIFENSLAL ECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH LMFSMSLGFLFPFNSWDFPVYFGLAFLVIFAFYCGDYVHNRNLFAAVAKFSNSMIFISIF HHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHH SFLPYLLFYLDFNPQAAGGFDFVLPELRTETDRFLILFGLFLFLVFSFLITRLDSRRKIV HHHHHHHHHHCCCCCCCCCCHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH FFVLLAGVSALLSKAWSIPLLAVLLPVFVFSLLLFLKDIPERSASGFVYLLISAASFIAL HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH LCEVIFLDDPISGEFARMNTVFKFYMHLWIFLAISAAYSYYDLNSHYAARSGNRKTLKQF HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHCCCCHHHHHHH VKKGWSVILVILIICCAIFPAVSTVTRIKEMNAEPSLDGMEYMRELDRGDYNAIRWMQAN HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHEEEEEEC IKGSPVILETSEDDSSYSYACRVSSNTGIPAVIGWARHERFWGRDHEEVKKRIGDVSLIY CCCCCEEEECCCCCCCCEEEEEECCCCCCCCEEEHHHHHHHCCCCHHHHHHHHCCEEEEE STGSEEEAIELIEKYNVTYVYIGTLERQVYDVNTKKFENKAYFEPVYEGSATIYKLKKKP ECCCHHHHHHHHHHCCCEEEEEEEHHHHHEECCHHHHCCCCCCCHHHCCCCEEEEECCCC >Mature Secondary Structure SEYLHIIIWFFLIEALSFISVPFIRSAGNRLADGGYSVSRALGIMLVTYLSWIFSYILG CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH FSFTAVLIAFFLLCSVSIFLYRKQKFFPGRKVLVVNELVFASGFFFFLLVRTYLPEIYRH HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH EKFMDFAFLNAVIRASSFPPQDPWFAGGLMDFYYYFGYLSVAVFGKLSAVKPSILFNLAV HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH ALTFALSLNAFFGMGYNLTRGKIRYGILTAVFGMLLGNLQGLIEFVSVYIRHEQALGGYY HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE WSSSRVIPFTINEFPYFSFIHGDLHSHMLAIPFQLLVLAFLLNMHFRKNEDSIFENSLAL ECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH LMFSMSLGFLFPFNSWDFPVYFGLAFLVIFAFYCGDYVHNRNLFAAVAKFSNSMIFISIF HHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHH SFLPYLLFYLDFNPQAAGGFDFVLPELRTETDRFLILFGLFLFLVFSFLITRLDSRRKIV HHHHHHHHHHCCCCCCCCCCHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH FFVLLAGVSALLSKAWSIPLLAVLLPVFVFSLLLFLKDIPERSASGFVYLLISAASFIAL HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH LCEVIFLDDPISGEFARMNTVFKFYMHLWIFLAISAAYSYYDLNSHYAARSGNRKTLKQF HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHCCCCHHHHHHH VKKGWSVILVILIICCAIFPAVSTVTRIKEMNAEPSLDGMEYMRELDRGDYNAIRWMQAN HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHEEEEEEC IKGSPVILETSEDDSSYSYACRVSSNTGIPAVIGWARHERFWGRDHEEVKKRIGDVSLIY CCCCCEEEECCCCCCCCEEEEEECCCCCCCCEEEHHHHHHHCCCCHHHHHHHHCCEEEEE STGSEEEAIELIEKYNVTYVYIGTLERQVYDVNTKKFENKAYFEPVYEGSATIYKLKKKP ECCCHHHHHHHHHHCCCEEEEEEEHHHHHEECCHHHHCCCCCCCHHHCCCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA