| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is ybgA [H]
Identifier: 21226915
GI number: 21226915
Start: 963330
End: 964313
Strand: Reverse
Name: ybgA [H]
Synonym: MM_0813
Alternate gene names: 21226915
Gene position: 964313-963330 (Counterclockwise)
Preceding gene: 21226919
Following gene: 21226914
Centisome position: 23.54
GC content: 44.0
Gene sequence:
>984_bases ATGAGAGAGTTTTCTCGACCGAAGGTTGTAATTAGCAGGTGTCTTGAGTTTGATCACTGCCGATACAATGGAGATATGAT CAGCAGTCCTGTGGTGGTAAAACTCAAAAAACACGTTGATTTCCTGCCCGTTTGTCCTGAAGTGGAAATAGGGCTTGGAG TACCAAGAAACCCTGTGAGAATAGTCCTTGATAAAGGAGATCACAGGCTTGTCCAGCCTTCAAGTGGGAAGGATGTAACT GAGGATATGAAATCTTTCTGTTCCAATTTTCTTGATTCTATATACGAAGTTGACGGTTTTATTCTTAAATTCAGGTCTCC TTCCTGCGGTCTCAAGGACGTGAAGGTTTACCCGTCTGCAGGGAGTCATGGAGGCGCGGTTGAAAAGATTTCCGGATATT TCGGAGGTGCTGTTCTGGGAAGGTATCCTTTCCATCCTGTTGAGGACGAGGGCAGGCTCAGAAACGCCCGGATAAAAGAG CATTTCCTTACGAAACTCTTCACATTTGCAGCTTTTCGGAAAGTAAAGTCCGAGGGCAGTATAAAGGATCTGATAAATTT CCATGCGCAGAACAAGTTTCTTCTTATGGCTTATAATCAGGCTGAACTCCAAAAATTAGGCGAAATTGCTGCAAACCGAG AAAAAAGGCCCTGGAAAGAGCTGATTTCCGATTATGAAAATCACCTGTACAGCGCCCTTTCCAGAGCTCCAAGGTACACT TCAACCATAAACGTGTTAATGCACGCTCTCGGATTTTTTTCAGACCAGCTTTCAAGCCGTGAAAAAGCCCTGTTTTTTGA TTGGGTTCAGAAATACAGGGAAGGCAGGGCTTCGGTCTGTCCTGCAATAAACATGATCAGGTCATGGATTGTACGGTTTG AAGACGGCTACCTCATGAGCCAGACTTTTTTCGAACCTTATCCTGAGGATTTAATAGAAATAAATCCTGTAGAATCCCAC CTGAGGGAAGATCTCTGGAAATAA
Upstream 100 bases:
>100_bases TTTTTTATATTATCATCACTTATTTTTTTCAGTAAGTCGCATGATCCTTTTTGTCTGGAAAACAATTTATCCAAGTAACT CCTTTTTGTATGGGGGTTAA
Downstream 100 bases:
>100_bases AGTTTTATTAAGATATTTCTGGACGGAAGTAAACCATGAAAGCTAGAATTAAACTGACTTTTATTTTCTTACTCGTATAT ATGGCTGCAGTTCTTTTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: ORF169; TKP [H]
Number of amino acids: Translated: 327; Mature: 327
Protein sequence:
>327_residues MREFSRPKVVISRCLEFDHCRYNGDMISSPVVVKLKKHVDFLPVCPEVEIGLGVPRNPVRIVLDKGDHRLVQPSSGKDVT EDMKSFCSNFLDSIYEVDGFILKFRSPSCGLKDVKVYPSAGSHGGAVEKISGYFGGAVLGRYPFHPVEDEGRLRNARIKE HFLTKLFTFAAFRKVKSEGSIKDLINFHAQNKFLLMAYNQAELQKLGEIAANREKRPWKELISDYENHLYSALSRAPRYT STINVLMHALGFFSDQLSSREKALFFDWVQKYREGRASVCPAINMIRSWIVRFEDGYLMSQTFFEPYPEDLIEINPVESH LREDLWK
Sequences:
>Translated_327_residues MREFSRPKVVISRCLEFDHCRYNGDMISSPVVVKLKKHVDFLPVCPEVEIGLGVPRNPVRIVLDKGDHRLVQPSSGKDVT EDMKSFCSNFLDSIYEVDGFILKFRSPSCGLKDVKVYPSAGSHGGAVEKISGYFGGAVLGRYPFHPVEDEGRLRNARIKE HFLTKLFTFAAFRKVKSEGSIKDLINFHAQNKFLLMAYNQAELQKLGEIAANREKRPWKELISDYENHLYSALSRAPRYT STINVLMHALGFFSDQLSSREKALFFDWVQKYREGRASVCPAINMIRSWIVRFEDGYLMSQTFFEPYPEDLIEINPVESH LREDLWK >Mature_327_residues MREFSRPKVVISRCLEFDHCRYNGDMISSPVVVKLKKHVDFLPVCPEVEIGLGVPRNPVRIVLDKGDHRLVQPSSGKDVT EDMKSFCSNFLDSIYEVDGFILKFRSPSCGLKDVKVYPSAGSHGGAVEKISGYFGGAVLGRYPFHPVEDEGRLRNARIKE HFLTKLFTFAAFRKVKSEGSIKDLINFHAQNKFLLMAYNQAELQKLGEIAANREKRPWKELISDYENHLYSALSRAPRYT STINVLMHALGFFSDQLSSREKALFFDWVQKYREGRASVCPAINMIRSWIVRFEDGYLMSQTFFEPYPEDLIEINPVESH LREDLWK
Specific function: Unknown
COG id: COG3272
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786925, Length=156, Percent_Identity=25, Blast_Score=67, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013560 [H]
Pfam domain/function: PF08349 DUF1722 [H]
EC number: NA
Molecular weight: Translated: 37600; Mature: 37600
Theoretical pI: Translated: 8.55; Mature: 8.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MREFSRPKVVISRCLEFDHCRYNGDMISSPVVVKLKKHVDFLPVCPEVEIGLGVPRNPVR CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHEEEHHCCCCCCCCCCCCCCCCCCCCCEE IVLDKGDHRLVQPSSGKDVTEDMKSFCSNFLDSIYEVDGFILKFRSPSCGLKDVKVYPSA EEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEECCC GSHGGAVEKISGYFGGAVLGRYPFHPVEDEGRLRNARIKEHFLTKLFTFAAFRKVKSEGS CCCCCHHHHHHHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC IKDLINFHAQNKFLLMAYNQAELQKLGEIAANREKRPWKELISDYENHLYSALSRAPRYT HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHH STINVLMHALGFFSDQLSSREKALFFDWVQKYREGRASVCPAINMIRSWIVRFEDGYLMS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEH QTFFEPYPEDLIEINPVESHLREDLWK HHHCCCCCHHHEECCHHHHHHHHHHCC >Mature Secondary Structure MREFSRPKVVISRCLEFDHCRYNGDMISSPVVVKLKKHVDFLPVCPEVEIGLGVPRNPVR CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHEEEHHCCCCCCCCCCCCCCCCCCCCCEE IVLDKGDHRLVQPSSGKDVTEDMKSFCSNFLDSIYEVDGFILKFRSPSCGLKDVKVYPSA EEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEECCC GSHGGAVEKISGYFGGAVLGRYPFHPVEDEGRLRNARIKEHFLTKLFTFAAFRKVKSEGS CCCCCHHHHHHHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC IKDLINFHAQNKFLLMAYNQAELQKLGEIAANREKRPWKELISDYENHLYSALSRAPRYT HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHH STINVLMHALGFFSDQLSSREKALFFDWVQKYREGRASVCPAINMIRSWIVRFEDGYLMS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEH QTFFEPYPEDLIEINPVESHLREDLWK HHHCCCCCHHHEECCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 6325460; 8905232; 9278503; 8387990 [H]