Definition Methanosarcina mazei Go1 chromosome, complete genome.
Accession NC_003901
Length 4,096,345

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The map label for this gene is ybgA [H]

Identifier: 21226915

GI number: 21226915

Start: 963330

End: 964313

Strand: Reverse

Name: ybgA [H]

Synonym: MM_0813

Alternate gene names: 21226915

Gene position: 964313-963330 (Counterclockwise)

Preceding gene: 21226919

Following gene: 21226914

Centisome position: 23.54

GC content: 44.0

Gene sequence:

>984_bases
ATGAGAGAGTTTTCTCGACCGAAGGTTGTAATTAGCAGGTGTCTTGAGTTTGATCACTGCCGATACAATGGAGATATGAT
CAGCAGTCCTGTGGTGGTAAAACTCAAAAAACACGTTGATTTCCTGCCCGTTTGTCCTGAAGTGGAAATAGGGCTTGGAG
TACCAAGAAACCCTGTGAGAATAGTCCTTGATAAAGGAGATCACAGGCTTGTCCAGCCTTCAAGTGGGAAGGATGTAACT
GAGGATATGAAATCTTTCTGTTCCAATTTTCTTGATTCTATATACGAAGTTGACGGTTTTATTCTTAAATTCAGGTCTCC
TTCCTGCGGTCTCAAGGACGTGAAGGTTTACCCGTCTGCAGGGAGTCATGGAGGCGCGGTTGAAAAGATTTCCGGATATT
TCGGAGGTGCTGTTCTGGGAAGGTATCCTTTCCATCCTGTTGAGGACGAGGGCAGGCTCAGAAACGCCCGGATAAAAGAG
CATTTCCTTACGAAACTCTTCACATTTGCAGCTTTTCGGAAAGTAAAGTCCGAGGGCAGTATAAAGGATCTGATAAATTT
CCATGCGCAGAACAAGTTTCTTCTTATGGCTTATAATCAGGCTGAACTCCAAAAATTAGGCGAAATTGCTGCAAACCGAG
AAAAAAGGCCCTGGAAAGAGCTGATTTCCGATTATGAAAATCACCTGTACAGCGCCCTTTCCAGAGCTCCAAGGTACACT
TCAACCATAAACGTGTTAATGCACGCTCTCGGATTTTTTTCAGACCAGCTTTCAAGCCGTGAAAAAGCCCTGTTTTTTGA
TTGGGTTCAGAAATACAGGGAAGGCAGGGCTTCGGTCTGTCCTGCAATAAACATGATCAGGTCATGGATTGTACGGTTTG
AAGACGGCTACCTCATGAGCCAGACTTTTTTCGAACCTTATCCTGAGGATTTAATAGAAATAAATCCTGTAGAATCCCAC
CTGAGGGAAGATCTCTGGAAATAA

Upstream 100 bases:

>100_bases
TTTTTTATATTATCATCACTTATTTTTTTCAGTAAGTCGCATGATCCTTTTTGTCTGGAAAACAATTTATCCAAGTAACT
CCTTTTTGTATGGGGGTTAA

Downstream 100 bases:

>100_bases
AGTTTTATTAAGATATTTCTGGACGGAAGTAAACCATGAAAGCTAGAATTAAACTGACTTTTATTTTCTTACTCGTATAT
ATGGCTGCAGTTCTTTTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: ORF169; TKP [H]

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MREFSRPKVVISRCLEFDHCRYNGDMISSPVVVKLKKHVDFLPVCPEVEIGLGVPRNPVRIVLDKGDHRLVQPSSGKDVT
EDMKSFCSNFLDSIYEVDGFILKFRSPSCGLKDVKVYPSAGSHGGAVEKISGYFGGAVLGRYPFHPVEDEGRLRNARIKE
HFLTKLFTFAAFRKVKSEGSIKDLINFHAQNKFLLMAYNQAELQKLGEIAANREKRPWKELISDYENHLYSALSRAPRYT
STINVLMHALGFFSDQLSSREKALFFDWVQKYREGRASVCPAINMIRSWIVRFEDGYLMSQTFFEPYPEDLIEINPVESH
LREDLWK

Sequences:

>Translated_327_residues
MREFSRPKVVISRCLEFDHCRYNGDMISSPVVVKLKKHVDFLPVCPEVEIGLGVPRNPVRIVLDKGDHRLVQPSSGKDVT
EDMKSFCSNFLDSIYEVDGFILKFRSPSCGLKDVKVYPSAGSHGGAVEKISGYFGGAVLGRYPFHPVEDEGRLRNARIKE
HFLTKLFTFAAFRKVKSEGSIKDLINFHAQNKFLLMAYNQAELQKLGEIAANREKRPWKELISDYENHLYSALSRAPRYT
STINVLMHALGFFSDQLSSREKALFFDWVQKYREGRASVCPAINMIRSWIVRFEDGYLMSQTFFEPYPEDLIEINPVESH
LREDLWK
>Mature_327_residues
MREFSRPKVVISRCLEFDHCRYNGDMISSPVVVKLKKHVDFLPVCPEVEIGLGVPRNPVRIVLDKGDHRLVQPSSGKDVT
EDMKSFCSNFLDSIYEVDGFILKFRSPSCGLKDVKVYPSAGSHGGAVEKISGYFGGAVLGRYPFHPVEDEGRLRNARIKE
HFLTKLFTFAAFRKVKSEGSIKDLINFHAQNKFLLMAYNQAELQKLGEIAANREKRPWKELISDYENHLYSALSRAPRYT
STINVLMHALGFFSDQLSSREKALFFDWVQKYREGRASVCPAINMIRSWIVRFEDGYLMSQTFFEPYPEDLIEINPVESH
LREDLWK

Specific function: Unknown

COG id: COG3272

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786925, Length=156, Percent_Identity=25, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013560 [H]

Pfam domain/function: PF08349 DUF1722 [H]

EC number: NA

Molecular weight: Translated: 37600; Mature: 37600

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREFSRPKVVISRCLEFDHCRYNGDMISSPVVVKLKKHVDFLPVCPEVEIGLGVPRNPVR
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHEEEHHCCCCCCCCCCCCCCCCCCCCCEE
IVLDKGDHRLVQPSSGKDVTEDMKSFCSNFLDSIYEVDGFILKFRSPSCGLKDVKVYPSA
EEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEECCC
GSHGGAVEKISGYFGGAVLGRYPFHPVEDEGRLRNARIKEHFLTKLFTFAAFRKVKSEGS
CCCCCHHHHHHHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
IKDLINFHAQNKFLLMAYNQAELQKLGEIAANREKRPWKELISDYENHLYSALSRAPRYT
HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHH
STINVLMHALGFFSDQLSSREKALFFDWVQKYREGRASVCPAINMIRSWIVRFEDGYLMS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEH
QTFFEPYPEDLIEINPVESHLREDLWK
HHHCCCCCHHHEECCHHHHHHHHHHCC
>Mature Secondary Structure
MREFSRPKVVISRCLEFDHCRYNGDMISSPVVVKLKKHVDFLPVCPEVEIGLGVPRNPVR
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHEEEHHCCCCCCCCCCCCCCCCCCCCCEE
IVLDKGDHRLVQPSSGKDVTEDMKSFCSNFLDSIYEVDGFILKFRSPSCGLKDVKVYPSA
EEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEECCC
GSHGGAVEKISGYFGGAVLGRYPFHPVEDEGRLRNARIKEHFLTKLFTFAAFRKVKSEGS
CCCCCHHHHHHHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
IKDLINFHAQNKFLLMAYNQAELQKLGEIAANREKRPWKELISDYENHLYSALSRAPRYT
HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHH
STINVLMHALGFFSDQLSSREKALFFDWVQKYREGRASVCPAINMIRSWIVRFEDGYLMS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEH
QTFFEPYPEDLIEINPVESHLREDLWK
HHHCCCCCHHHEECCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6325460; 8905232; 9278503; 8387990 [H]