| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21226166
Identifier: 21226166
GI number: 21226166
Start: 83342
End: 85348
Strand: Reverse
Name: 21226166
Synonym: MM_0064
Alternate gene names: NA
Gene position: 85348-83342 (Counterclockwise)
Preceding gene: 21226167
Following gene: 21226165
Centisome position: 2.08
GC content: 42.45
Gene sequence:
>2007_bases ATGAACATAAACAGAGTATTTGCTCTATTTTTAGCCTTAGTGGTCTTTTCATCAGCTTTGGGTATAGGAGCTGCAGCTGA AATTACTGTCCAGCCCGGACAATCGATACAGGACGTGTTGAATAGCTCAGTCTCGGGTGATGAGATTATCATAAGCCCTG GAAACTATGCTGACAATCTCAGGATAACGACAGGTGATATTACTGTCAGGTCGGCTTCCGGGAATCCTGAAGATACGATA GTGACAGCGGCCAGTCCGGCTGAAGATGTTTTTTATGTTGAAGCCAGCAACGTAACAATTACAGGGCTCGGCATAAATGG TGCAGGATATGACCGTGCCGGCGTTTATCTGATAAGATCAAATAACTGTATTATTGAAAATAACGAATTTTTAAATAACG CTCTCGGAATATACCTCAAGAACTCTACGTATAACCTTATTCTTAATAATACGGCAGTAGAAGGTAAGCGAGCGGTCAAT GTTGAGAGGTCAAACTATAATACAATCTCAGGAAATAATGTTTCAGACCAGAGGTTCGGGATCTATTTCCTTATATCAGA AGCGAACATAGCTTCGAATAATCAGGTAAGTGGGAGCGTCGACCATGGAATTGTCCTCGAAAGTTGCAGTGATACCAGCC TTGTGAACAATACTGTAAGCTCAAATGAGGATAACGGCATTCACATAGTTGGTTCGACCAACAACAGCCTTACAGGAAAT ACAGCGGATTCAAACCTTGTCTATGGGATCTATCTGAGGGATTCAAACGGCAACAACCTTACAGACAACAAAGCATTAAA CAACAGCAGAGGTATTTTCCTGTTAAGGTCGGGCGAAAGTGAACTGTCGGGTAATGAAGTTTCAAACAACAGAAACGGCA TTCTGCTAACGTCTGCAGGAAACAGCAGTATACTGTATAGCACGGTTTTACAGAACAATGTCTCCGGAATATCTTTACTT AATTCCACTTACTGCAATATCAGTGAGAATGTGCTTTCCGGCAATACACTCGGAATAGACCTTGCTTTCTCAAGCAACAG TACAATTGTCAATAACAACATTCAGGAAGGAGGAAGAGGCCTTAACCTTCAGGACTCGAATTACAATATACTCGTAAACA ATACAGCTTTGAAAAACAGGTATGGAGCCTACCTGCTGCGCTCTGGCTGGAATGTGTTCTCCAATAATATAGCAAGCGAA AGCGATGACCACGGTATCGTCCTGGAGAACTCAAGCAACAGTAACGAACTTAGCGGCAACACAGCAGACTCTAACCGCGC TTATGGCATATACCTCACAGGTTCAAATAATAACGATATCAGTAACAATAAAGTATCCGAAAATTCAAGGGGTATTTACC TTATGACGTCTAACGGGAACGCCCTTTTGAATAATACGGTGTTGAATAATGGAGAATATGCAATTCTGTTGGCGTATTCA TCAGGTAACGATATCCTGGAAAACGAGGCTTCGAGCAGCAACAGGGGTATTCACCTGAGCACCTCCGATGACAACACGCT TTCAGGCAATAATATTGTCTCAAACGGTGTTTCCGGCTTACATATGACTTCTACAAGCAACAATAATACCTTCTTTAACA ACTATCTAAACAATAATGTTAATGCGGATGTTAAGCAGGGCAGTGTCGGAAATGTCTGGAATACAACAAAAACCAAAGGC ACAAGCATAACAGGCGGACCATATCTGGGGGGCAATTTCTGGGGAAAACCTGATGGGACAGGCTTCTCTCAGACAACAGC CGATTCCGATGTAGACGGTATTGCCGATGGGGAGTTTAATATTTCAAACAGCGGCTATGCGGACTATCTTCCTCTTGTAG CTGTTTCCGATACAGAGCAGCCCGTAATTCCTGAAAATTTAACGGATGACGAGCCGGAAATGCCAGAAAATGAAACGGAA ACGAATATTAACACAACAGAAACTAACACAACGGAAACAACTATCAGCGAGACAGAAACGGATACTTACGAAAACGAGAC TGCATAA
Upstream 100 bases:
>100_bases TATTATTCTGACATTATTTTCTAATAGATTTATATTATTTCATGTTTATTTCAACATGGGATATATAAATCTAAATAATA AATAACATCTGACGTGGGGG
Downstream 100 bases:
>100_bases AAAAATCCGCTCAAAAAATGAAAAATAATGAAAAATATACCGGGCATGAAGTTCAGTTTACAGCCTGAAACTGGACGATT CAACCGAATTAAAGAAGACT
Product: surface layer protein B
Products: NA
Alternate protein names: Surface Layer Protein B; Cell Surface Glycoprotein; Nitrous Oxide Reductase Maturation Protein NosD; Cell Surfacr Protein; Parallel Beta-Helix Repeat-Containing Protein; Surface Layer Protein; Nitrous Oxidase Accessory Protein; Nitrous Oxidase Accessory Protein-Like; NosD Protein; PKD Domain Containing Protein
Number of amino acids: Translated: 668; Mature: 668
Protein sequence:
>668_residues MNINRVFALFLALVVFSSALGIGAAAEITVQPGQSIQDVLNSSVSGDEIIISPGNYADNLRITTGDITVRSASGNPEDTI VTAASPAEDVFYVEASNVTITGLGINGAGYDRAGVYLIRSNNCIIENNEFLNNALGIYLKNSTYNLILNNTAVEGKRAVN VERSNYNTISGNNVSDQRFGIYFLISEANIASNNQVSGSVDHGIVLESCSDTSLVNNTVSSNEDNGIHIVGSTNNSLTGN TADSNLVYGIYLRDSNGNNLTDNKALNNSRGIFLLRSGESELSGNEVSNNRNGILLTSAGNSSILYSTVLQNNVSGISLL NSTYCNISENVLSGNTLGIDLAFSSNSTIVNNNIQEGGRGLNLQDSNYNILVNNTALKNRYGAYLLRSGWNVFSNNIASE SDDHGIVLENSSNSNELSGNTADSNRAYGIYLTGSNNNDISNNKVSENSRGIYLMTSNGNALLNNTVLNNGEYAILLAYS SGNDILENEASSSNRGIHLSTSDDNTLSGNNIVSNGVSGLHMTSTSNNNTFFNNYLNNNVNADVKQGSVGNVWNTTKTKG TSITGGPYLGGNFWGKPDGTGFSQTTADSDVDGIADGEFNISNSGYADYLPLVAVSDTEQPVIPENLTDDEPEMPENETE TNINTTETNTTETTISETETDTYENETA
Sequences:
>Translated_668_residues MNINRVFALFLALVVFSSALGIGAAAEITVQPGQSIQDVLNSSVSGDEIIISPGNYADNLRITTGDITVRSASGNPEDTI VTAASPAEDVFYVEASNVTITGLGINGAGYDRAGVYLIRSNNCIIENNEFLNNALGIYLKNSTYNLILNNTAVEGKRAVN VERSNYNTISGNNVSDQRFGIYFLISEANIASNNQVSGSVDHGIVLESCSDTSLVNNTVSSNEDNGIHIVGSTNNSLTGN TADSNLVYGIYLRDSNGNNLTDNKALNNSRGIFLLRSGESELSGNEVSNNRNGILLTSAGNSSILYSTVLQNNVSGISLL NSTYCNISENVLSGNTLGIDLAFSSNSTIVNNNIQEGGRGLNLQDSNYNILVNNTALKNRYGAYLLRSGWNVFSNNIASE SDDHGIVLENSSNSNELSGNTADSNRAYGIYLTGSNNNDISNNKVSENSRGIYLMTSNGNALLNNTVLNNGEYAILLAYS SGNDILENEASSSNRGIHLSTSDDNTLSGNNIVSNGVSGLHMTSTSNNNTFFNNYLNNNVNADVKQGSVGNVWNTTKTKG TSITGGPYLGGNFWGKPDGTGFSQTTADSDVDGIADGEFNISNSGYADYLPLVAVSDTEQPVIPENLTDDEPEMPENETE TNINTTETNTTETTISETETDTYENETA >Mature_668_residues MNINRVFALFLALVVFSSALGIGAAAEITVQPGQSIQDVLNSSVSGDEIIISPGNYADNLRITTGDITVRSASGNPEDTI VTAASPAEDVFYVEASNVTITGLGINGAGYDRAGVYLIRSNNCIIENNEFLNNALGIYLKNSTYNLILNNTAVEGKRAVN VERSNYNTISGNNVSDQRFGIYFLISEANIASNNQVSGSVDHGIVLESCSDTSLVNNTVSSNEDNGIHIVGSTNNSLTGN TADSNLVYGIYLRDSNGNNLTDNKALNNSRGIFLLRSGESELSGNEVSNNRNGILLTSAGNSSILYSTVLQNNVSGISLL NSTYCNISENVLSGNTLGIDLAFSSNSTIVNNNIQEGGRGLNLQDSNYNILVNNTALKNRYGAYLLRSGWNVFSNNIASE SDDHGIVLENSSNSNELSGNTADSNRAYGIYLTGSNNNDISNNKVSENSRGIYLMTSNGNALLNNTVLNNGEYAILLAYS SGNDILENEASSSNRGIHLSTSDDNTLSGNNIVSNGVSGLHMTSTSNNNTFFNNYLNNNVNADVKQGSVGNVWNTTKTKG TSITGGPYLGGNFWGKPDGTGFSQTTADSDVDGIADGEFNISNSGYADYLPLVAVSDTEQPVIPENLTDDEPEMPENETE TNINTTETNTTETTISETETDTYENETA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 71022; Mature: 71022
Theoretical pI: Translated: 3.92; Mature: 3.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNINRVFALFLALVVFSSALGIGAAAEITVQPGQSIQDVLNSSVSGDEIIISPGNYADNL CCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHCCCCCCEEEECCCCCCCCE RITTGDITVRSASGNPEDTIVTAASPAEDVFYVEASNVTITGLGINGAGYDRAGVYLIRS EEEECCEEEEECCCCCCCEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCCCCEEEEEC NNCIIENNEFLNNALGIYLKNSTYNLILNNTAVEGKRAVNVERSNYNTISGNNVSDQRFG CCEEEECCHHHCCEEEEEEECCEEEEEEECCCCCCCEEEEEECCCCCEECCCCCCCCEEE IYFLISEANIASNNQVSGSVDHGIVLESCSDTSLVNNTVSSNEDNGIHIVGSTNNSLTGN EEEEEEECCCCCCCCCCCCCCCCEEEECCCCCHHHCCCCCCCCCCCEEEEECCCCCCCCC TADSNLVYGIYLRDSNGNNLTDNKALNNSRGIFLLRSGESELSGNEVSNNRNGILLTSAG CCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCC NSSILYSTVLQNNVSGISLLNSTYCNISENVLSGNTLGIDLAFSSNSTIVNNNIQEGGRG CCCEEEEEHHHCCCCCEEEEECCCCCCCCCEECCCEEEEEEEECCCCEEEECCHHHCCCC LNLQDSNYNILVNNTALKNRYGAYLLRSGWNVFSNNIASESDDHGIVLENSSNSNELSGN CCEECCCCEEEEECCCCCCCCCEEEEECCCHHHHCCCCCCCCCCCEEEECCCCCCCCCCC TADSNRAYGIYLTGSNNNDISNNKVSENSRGIYLMTSNGNALLNNTVLNNGEYAILLAYS CCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEEEECEEECCCCEEEEEEEC SGNDILENEASSSNRGIHLSTSDDNTLSGNNIVSNGVSGLHMTSTSNNNTFFNNYLNNNV CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHCCCCCEEEEECCCCCEEEEHHCCCCC NADVKQGSVGNVWNTTKTKGTSITGGPYLGGNFWGKPDGTGFSQTTADSDVDGIADGEFN CCEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE ISNSGYADYLPLVAVSDTEQPVIPENLTDDEPEMPENETETNINTTETNTTETTISETET ECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC DTYENETA CCCCCCCC >Mature Secondary Structure MNINRVFALFLALVVFSSALGIGAAAEITVQPGQSIQDVLNSSVSGDEIIISPGNYADNL CCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHCCCCCCEEEECCCCCCCCE RITTGDITVRSASGNPEDTIVTAASPAEDVFYVEASNVTITGLGINGAGYDRAGVYLIRS EEEECCEEEEECCCCCCCEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCCCCEEEEEC NNCIIENNEFLNNALGIYLKNSTYNLILNNTAVEGKRAVNVERSNYNTISGNNVSDQRFG CCEEEECCHHHCCEEEEEEECCEEEEEEECCCCCCCEEEEEECCCCCEECCCCCCCCEEE IYFLISEANIASNNQVSGSVDHGIVLESCSDTSLVNNTVSSNEDNGIHIVGSTNNSLTGN EEEEEEECCCCCCCCCCCCCCCCEEEECCCCCHHHCCCCCCCCCCCEEEEECCCCCCCCC TADSNLVYGIYLRDSNGNNLTDNKALNNSRGIFLLRSGESELSGNEVSNNRNGILLTSAG CCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCC NSSILYSTVLQNNVSGISLLNSTYCNISENVLSGNTLGIDLAFSSNSTIVNNNIQEGGRG CCCEEEEEHHHCCCCCEEEEECCCCCCCCCEECCCEEEEEEEECCCCEEEECCHHHCCCC LNLQDSNYNILVNNTALKNRYGAYLLRSGWNVFSNNIASESDDHGIVLENSSNSNELSGN CCEECCCCEEEEECCCCCCCCCEEEEECCCHHHHCCCCCCCCCCCEEEECCCCCCCCCCC TADSNRAYGIYLTGSNNNDISNNKVSENSRGIYLMTSNGNALLNNTVLNNGEYAILLAYS CCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEEEECEEECCCCEEEEEEEC SGNDILENEASSSNRGIHLSTSDDNTLSGNNIVSNGVSGLHMTSTSNNNTFFNNYLNNNV CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHCCCCCEEEEECCCCCEEEEHHCCCCC NADVKQGSVGNVWNTTKTKGTSITGGPYLGGNFWGKPDGTGFSQTTADSDVDGIADGEFN CCEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE ISNSGYADYLPLVAVSDTEQPVIPENLTDDEPEMPENETETNINTTETNTTETTISETET ECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC DTYENETA CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA