| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is hdrA [H]
Identifier: 21226158
GI number: 21226158
Start: 73806
End: 76187
Strand: Reverse
Name: hdrA [H]
Synonym: MM_0056
Alternate gene names: 21226158
Gene position: 76187-73806 (Counterclockwise)
Preceding gene: 21226164
Following gene: 21226157
Centisome position: 1.86
GC content: 50.25
Gene sequence:
>2382_bases ATGAGAATCGGAGTCTACGTTTGCCATTGCGGACTGAATATTGCAGGAGTAATTGATGTTTCAGCCCTTGAAGAAATGGC AGGTGAACTGGAAGATGTGGTGCTTGCCCGGGAAGTACAGTTTCTATGTTCCGATTCCGGACAGGAAGGCATCATAAAGG ACATAAAAGATAATAAAATCGACAGGGTTGTGATAGCAGCCTGTTCCCCAAGGCTGCACGAAAAAACATTCAGGCATGTC ATGGAAAAAGCTGACCTCAACCCTTACCTTATGGAAATGGTAAACATAAGGGAGCAGTGCTCCTGGGTACACGCGGATGA CCCCCAGATGGCGACCCAGAAGGCTTTTGACCTGATAAGGATGGGAGTTGCAAAAGCCCGTTTCCTTAGGGAATTGAGTG CGACAAGCTCTAAAGCCAGCAGAAATGTCCTTATCATAGGCGGAGGAGTTGCAGGAATAGAAGCCGCCTTAAACCTCGCA GAAGCCGGCTTTCCCGTAACCATGGTAGAAAGGGAATCCACAATCGGGGGCAAAATGGCTCTCATGAATGAGGTATTCCC CACAAACGACTGTTCTATCTGCGTGCTTGCCCCCAAAATGACTGAAGTTCAGAACCACCCCAACATTACTCTTTATACAT ATTCTGAGGTCACAGATATCTCAGGTTCCGTTGGAAAATTCCATGTTAGGGTCACACGCAAACCCAGGTTCGTTCTTGAA GACAAATGTAAAGGCTGTGTTGACCTTTGCTCAGAGGTCTGTCCCGTAGAAATAGAAAACCCCATGAACTATGGGATTGG GAAGTCCAGGGCAATCTATATGCCAATTCCGCAGTCAGTCCCGCAGGTAGTACTTATAGATCCTGACCACTGTGTGGGCT GCGGGCTCTGCCAGCTTGCATGTCCTGCAGAGGCTGTGGACTACGAGCAGAAACCCGAAGAAATAGAGTTCGAAGCAGGG GCAGTGATTGTTTCAACAGGCTACCAGCTCTTTGATGCTTCCCGGAAAAAAGAGTACGGGTTTGGAAAATACCCTGATGT CATAACGAATATGCAGCTTGAAAGGATGCTGAACTCTGCGGGACCCACAGGTGGGAGAGTCCTTGTGCCTTCAACAGGTC AGCCTCCAGAGAGTGTCGCATTTATTCAGTGTGTCGGGTCAAGGGACAAAACCGTAGGCAACGAACACTGTTCAAGAGTC TGCTGCATGGCAGCCCTTAAAAATTCCCAGATGGTTAAGGAACGCTATCCTGGTACTGATATCACGATCCACTATATAGA TATCCGGGCTGCAGGGGAGATGTATGAAGAATATTACGCCAGGACGCAGGGGATGGGTGTGGACTTCATCCGGGGAAAGG TCGCTGAGGTCTACGCCGGCGAAGACGGAAGGCCTGTTGTCCGCTACGAAAATACTCTTGAGTCCAGAGTTGAAGAAGAA GCTCACGACCTTGTTGTGCTTTCCACAGGGTACGAGCCGAGCAAAGCCGCAGAAGGAATTGGCAGGATGCTTAACCTTGC CCGGCGCCCTGACCGCTTTTTTGCAAGCGCACACCCGAAAATGCGCCCTGTTGATGCGCCGGTGAGCGGAGTCTTCCTTG CAGGCTGCGCCTCGGGGCCCAAAGAAATCCAGGTCTCCATAGCTCAGGGCAGTGCCTGTGCTTCCAAAGTTATGCAGCTC CTGGGCACGGGAGAACTTGAAGCCGACCCCATGGGTGCACATGTTGACCCTGATAAGTGTATAGGCTGCAGGACATGTGT TGAAGTCTGCAAGTTCGGAAAGATAAGCATTGTCGATAAAAAGGCTGTCGTTGACGAGGTTTCGTGCTACGGCTGCGGTG ACTGCAGTGCTGCATGCCCGGTAGGTGCAATCCAGATGCGGAACTTTGAAAATGAGCAGATTCTTGCGCAGGTCAGAGCT GCGACAGCTCATAAGTCCCAGTGCCCCTTTGTTGTCGCTTTTCTCTGCAACTGGTGCAGTTATGCCTGTGCAGACCTTAC CGGAATGTCCAGGATACATTACCCGACAAACATCAGAGTTATCCGTACCATGTGTTCTGCCAGGATAAACCCGGAGTTCG TCCTTGAAGCCCTCAAAGGCGGAGCTGACGGTGTGCTTGTTGCGGGCTGCAGGATGGACGAATGCCATTATATTCATGGA AATTTTGATGCGAAAAAGCGCATGGACGTTTTAAAAGAGATCATAAAGGAAATAGGGCTTGACCCGAAAAGGCTCAGGAC ACTCTGGATCTCGGCTGCAGAAGGAGAACGTTTCTCGAACACGATTACCGAGTTTGTAAAGGAACTTGAAGAAATAGGGC CCATAGGGAGTGAACTCAAACGGGAATACACCGCAACCGGACTCGAGGAGGTGGCTAAATGA
Upstream 100 bases:
>100_bases TCTGAACTTTTAACTTACAAATTATATTATAATCATATAACAAAATATATGCCATAGGTCAAACTCTAGGACTATTCATG GATATCAGGAGTAAACAAGC
Downstream 100 bases:
>100_bases GCGAGAAACTTCCGGAACATCCCGGAGAATGTCCCGAAAAATGCCCGGACCAGGAAATTCACGTATGTAACGGGTGCTGT GGTACCGGAGAAGGAGAAGA
Product: heterodisulfate reductase subunit A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 793; Mature: 793
Protein sequence:
>793_residues MRIGVYVCHCGLNIAGVIDVSALEEMAGELEDVVLAREVQFLCSDSGQEGIIKDIKDNKIDRVVIAACSPRLHEKTFRHV MEKADLNPYLMEMVNIREQCSWVHADDPQMATQKAFDLIRMGVAKARFLRELSATSSKASRNVLIIGGGVAGIEAALNLA EAGFPVTMVERESTIGGKMALMNEVFPTNDCSICVLAPKMTEVQNHPNITLYTYSEVTDISGSVGKFHVRVTRKPRFVLE DKCKGCVDLCSEVCPVEIENPMNYGIGKSRAIYMPIPQSVPQVVLIDPDHCVGCGLCQLACPAEAVDYEQKPEEIEFEAG AVIVSTGYQLFDASRKKEYGFGKYPDVITNMQLERMLNSAGPTGGRVLVPSTGQPPESVAFIQCVGSRDKTVGNEHCSRV CCMAALKNSQMVKERYPGTDITIHYIDIRAAGEMYEEYYARTQGMGVDFIRGKVAEVYAGEDGRPVVRYENTLESRVEEE AHDLVVLSTGYEPSKAAEGIGRMLNLARRPDRFFASAHPKMRPVDAPVSGVFLAGCASGPKEIQVSIAQGSACASKVMQL LGTGELEADPMGAHVDPDKCIGCRTCVEVCKFGKISIVDKKAVVDEVSCYGCGDCSAACPVGAIQMRNFENEQILAQVRA ATAHKSQCPFVVAFLCNWCSYACADLTGMSRIHYPTNIRVIRTMCSARINPEFVLEALKGGADGVLVAGCRMDECHYIHG NFDAKKRMDVLKEIIKEIGLDPKRLRTLWISAAEGERFSNTITEFVKELEEIGPIGSELKREYTATGLEEVAK
Sequences:
>Translated_793_residues MRIGVYVCHCGLNIAGVIDVSALEEMAGELEDVVLAREVQFLCSDSGQEGIIKDIKDNKIDRVVIAACSPRLHEKTFRHV MEKADLNPYLMEMVNIREQCSWVHADDPQMATQKAFDLIRMGVAKARFLRELSATSSKASRNVLIIGGGVAGIEAALNLA EAGFPVTMVERESTIGGKMALMNEVFPTNDCSICVLAPKMTEVQNHPNITLYTYSEVTDISGSVGKFHVRVTRKPRFVLE DKCKGCVDLCSEVCPVEIENPMNYGIGKSRAIYMPIPQSVPQVVLIDPDHCVGCGLCQLACPAEAVDYEQKPEEIEFEAG AVIVSTGYQLFDASRKKEYGFGKYPDVITNMQLERMLNSAGPTGGRVLVPSTGQPPESVAFIQCVGSRDKTVGNEHCSRV CCMAALKNSQMVKERYPGTDITIHYIDIRAAGEMYEEYYARTQGMGVDFIRGKVAEVYAGEDGRPVVRYENTLESRVEEE AHDLVVLSTGYEPSKAAEGIGRMLNLARRPDRFFASAHPKMRPVDAPVSGVFLAGCASGPKEIQVSIAQGSACASKVMQL LGTGELEADPMGAHVDPDKCIGCRTCVEVCKFGKISIVDKKAVVDEVSCYGCGDCSAACPVGAIQMRNFENEQILAQVRA ATAHKSQCPFVVAFLCNWCSYACADLTGMSRIHYPTNIRVIRTMCSARINPEFVLEALKGGADGVLVAGCRMDECHYIHG NFDAKKRMDVLKEIIKEIGLDPKRLRTLWISAAEGERFSNTITEFVKELEEIGPIGSELKREYTATGLEEVAK >Mature_793_residues MRIGVYVCHCGLNIAGVIDVSALEEMAGELEDVVLAREVQFLCSDSGQEGIIKDIKDNKIDRVVIAACSPRLHEKTFRHV MEKADLNPYLMEMVNIREQCSWVHADDPQMATQKAFDLIRMGVAKARFLRELSATSSKASRNVLIIGGGVAGIEAALNLA EAGFPVTMVERESTIGGKMALMNEVFPTNDCSICVLAPKMTEVQNHPNITLYTYSEVTDISGSVGKFHVRVTRKPRFVLE DKCKGCVDLCSEVCPVEIENPMNYGIGKSRAIYMPIPQSVPQVVLIDPDHCVGCGLCQLACPAEAVDYEQKPEEIEFEAG AVIVSTGYQLFDASRKKEYGFGKYPDVITNMQLERMLNSAGPTGGRVLVPSTGQPPESVAFIQCVGSRDKTVGNEHCSRV CCMAALKNSQMVKERYPGTDITIHYIDIRAAGEMYEEYYARTQGMGVDFIRGKVAEVYAGEDGRPVVRYENTLESRVEEE AHDLVVLSTGYEPSKAAEGIGRMLNLARRPDRFFASAHPKMRPVDAPVSGVFLAGCASGPKEIQVSIAQGSACASKVMQL LGTGELEADPMGAHVDPDKCIGCRTCVEVCKFGKISIVDKKAVVDEVSCYGCGDCSAACPVGAIQMRNFENEQILAQVRA ATAHKSQCPFVVAFLCNWCSYACADLTGMSRIHYPTNIRVIRTMCSARINPEFVLEALKGGADGVLVAGCRMDECHYIHG NFDAKKRMDVLKEIIKEIGLDPKRLRTLWISAAEGERFSNTITEFVKELEEIGPIGSELKREYTATGLEEVAK
Specific function: Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B). May act as the catalytic subunit [H]
COG id: COG1148
COG function: function code C; Heterodisulfide reductase, subunit A and related polyferredoxins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 4 4Fe-4S ferredoxin-type domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001450 - InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR003953 - InterPro: IPR003813 - InterPro: IPR016040 [H]
Pfam domain/function: PF00890 FAD_binding_2; PF00037 Fer4; PF02662 FlpD [H]
EC number: =1.8.98.1 [H]
Molecular weight: Translated: 86804; Mature: 86804
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: PS00061 ADH_SHORT ; PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.5 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 8.1 %Cys+Met (Translated Protein) 4.5 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 8.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIGVYVCHCGLNIAGVIDVSALEEMAGELEDVVLAREVQFLCSDSGQEGIIKDIKDNKI CEEEEEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCC DRVVIAACSPRLHEKTFRHVMEKADLNPYLMEMVNIREQCSWVHADDPQMATQKAFDLIR CEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH MGVAKARFLRELSATSSKASRNVLIIGGGVAGIEAALNLAEAGFPVTMVERESTIGGKMA HHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH LMNEVFPTNDCSICVLAPKMTEVQNHPNITLYTYSEVTDISGSVGKFHVRVTRKPRFVLE HHHHCCCCCCCEEEEECCCHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCEEHH DKCKGCVDLCSEVCPVEIENPMNYGIGKSRAIYMPIPQSVPQVVLIDPDHCVGCGLCQLA HHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCHHHHC CPAEAVDYEQKPEEIEFEAGAVIVSTGYQLFDASRKKEYGFGKYPDVITNMQLERMLNSA CCHHHCCCCCCCCCEEECCCEEEEECCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC GPTGGRVLVPSTGQPPESVAFIQCVGSRDKTVGNEHCSRVCCMAALKNSQMVKERYPGTD CCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCC ITIHYIDIRAAGEMYEEYYARTQGMGVDFIRGKVAEVYAGEDGRPVVRYENTLESRVEEE EEEEEEEEECHHHHHHHHHHHHCCCCCHHHHCCEEEEEECCCCCEEEEEHHHHHHHHHHH AHDLVVLSTGYEPSKAAEGIGRMLNLARRPDRFFASAHPKMRPVDAPVSGVFLAGCASGP HCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCEEEEECCCCC KEIQVSIAQGSACASKVMQLLGTGELEADPMGAHVDPDKCIGCRTCVEVCKFGKISIVDK CCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEH KAVVDEVSCYGCGDCSAACPVGAIQMRNFENEQILAQVRAATAHKSQCPFVVAFLCNWCS HHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH YACADLTGMSRIHYPTNIRVIRTMCSARINPEFVLEALKGGADGVLVAGCRMDECHYIHG HHHHHHCCCCEECCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEECCCCCCEEEEEC NFDAKKRMDVLKEIIKEIGLDPKRLRTLWISAAEGERFSNTITEFVKELEEIGPIGSELK CCCHHHHHHHHHHHHHHHCCCHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHH REYTATGLEEVAK HHHHHCCHHHHCC >Mature Secondary Structure MRIGVYVCHCGLNIAGVIDVSALEEMAGELEDVVLAREVQFLCSDSGQEGIIKDIKDNKI CEEEEEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCC DRVVIAACSPRLHEKTFRHVMEKADLNPYLMEMVNIREQCSWVHADDPQMATQKAFDLIR CEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH MGVAKARFLRELSATSSKASRNVLIIGGGVAGIEAALNLAEAGFPVTMVERESTIGGKMA HHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH LMNEVFPTNDCSICVLAPKMTEVQNHPNITLYTYSEVTDISGSVGKFHVRVTRKPRFVLE HHHHCCCCCCCEEEEECCCHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCEEHH DKCKGCVDLCSEVCPVEIENPMNYGIGKSRAIYMPIPQSVPQVVLIDPDHCVGCGLCQLA HHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCHHHHC CPAEAVDYEQKPEEIEFEAGAVIVSTGYQLFDASRKKEYGFGKYPDVITNMQLERMLNSA CCHHHCCCCCCCCCEEECCCEEEEECCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC GPTGGRVLVPSTGQPPESVAFIQCVGSRDKTVGNEHCSRVCCMAALKNSQMVKERYPGTD CCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCC ITIHYIDIRAAGEMYEEYYARTQGMGVDFIRGKVAEVYAGEDGRPVVRYENTLESRVEEE EEEEEEEEECHHHHHHHHHHHHCCCCCHHHHCCEEEEEECCCCCEEEEEHHHHHHHHHHH AHDLVVLSTGYEPSKAAEGIGRMLNLARRPDRFFASAHPKMRPVDAPVSGVFLAGCASGP HCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCEEEEECCCCC KEIQVSIAQGSACASKVMQLLGTGELEADPMGAHVDPDKCIGCRTCVEVCKFGKISIVDK CCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEH KAVVDEVSCYGCGDCSAACPVGAIQMRNFENEQILAQVRAATAHKSQCPFVVAFLCNWCS HHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH YACADLTGMSRIHYPTNIRVIRTMCSARINPEFVLEALKGGADGVLVAGCRMDECHYIHG HHHHHHCCCCEECCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEECCCCCCEEEEEC NFDAKKRMDVLKEIIKEIGLDPKRLRTLWISAAEGERFSNTITEFVKELEEIGPIGSELK CCCHHHHHHHHHHHHHHHCCCHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHH REYTATGLEEVAK HHHHHCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11932238 [H]