| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21226128
Identifier: 21226128
GI number: 21226128
Start: 28927
End: 29472
Strand: Reverse
Name: 21226128
Synonym: MM_0026
Alternate gene names: NA
Gene position: 29472-28927 (Counterclockwise)
Preceding gene: 21226129
Following gene: 21226122
Centisome position: 0.72
GC content: 38.46
Gene sequence:
>546_bases ATGAGCGATCGCGAACTTATAAAGCAAAAGAAAGAAGCTCTCATTGAGATGACAAACGGTTTTGCGGATCGTTATCTTGA TGAAGACTATAAAATGCTGTGCAGGAAGCTCATCGACAAAATGAGCCGGAAAAGGAAGGTGCCATTTATTTCAGGAAAGC TGGAGATTTGGGCGGCTGCAATAGTTTATTCTCTTGGGCAGATTAATTTCCTTTTTGATAAAAGTTTTGAGCCCTACGTG AGCGCTACTGATCTTTGCAATTATTTCGGGACAAGCCAGAGCACAACTTCACAGAAAGCAAAGATAATCCGCGATATGTT CAAAATGAGATATTTCGATGAGGAATTCTCAACAAAAAGAATGCTCAAGGAAAATCCCCTGAATGAGTTCGTAATGATCA ATGGGCTTATTGTCCCTGTTTCTGCCGTTATTAGGTTATTTGAAGAAAAGGAAGCTCAATTGAAGAAGGAATTAAATTTG GAAAATGAGGACTCTGTTGTGAAGAAAAAAGATAATAGAATAAATCGGGATCTAGGAGACTTTTGA
Upstream 100 bases:
>100_bases TGTCGAATAAATACTGGTTTTGGGATGAGCTCAGAGATAAAATATGGATCTGAAAAACTATAAAGTATAAATCATATAAA AGGTACTCAGGGGATGAACT
Downstream 100 bases:
>100_bases ATATCTTCTAGAATCATAAAAATCTACTATCAATTCCACTAATCAGAATTCATAGAAAACAAACATATTTTTATATATTG AGCTGATCCCAAAACCAATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 181; Mature: 180
Protein sequence:
>181_residues MSDRELIKQKKEALIEMTNGFADRYLDEDYKMLCRKLIDKMSRKRKVPFISGKLEIWAAAIVYSLGQINFLFDKSFEPYV SATDLCNYFGTSQSTTSQKAKIIRDMFKMRYFDEEFSTKRMLKENPLNEFVMINGLIVPVSAVIRLFEEKEAQLKKELNL ENEDSVVKKKDNRINRDLGDF
Sequences:
>Translated_181_residues MSDRELIKQKKEALIEMTNGFADRYLDEDYKMLCRKLIDKMSRKRKVPFISGKLEIWAAAIVYSLGQINFLFDKSFEPYV SATDLCNYFGTSQSTTSQKAKIIRDMFKMRYFDEEFSTKRMLKENPLNEFVMINGLIVPVSAVIRLFEEKEAQLKKELNL ENEDSVVKKKDNRINRDLGDF >Mature_180_residues SDRELIKQKKEALIEMTNGFADRYLDEDYKMLCRKLIDKMSRKRKVPFISGKLEIWAAAIVYSLGQINFLFDKSFEPYVS ATDLCNYFGTSQSTTSQKAKIIRDMFKMRYFDEEFSTKRMLKENPLNEFVMINGLIVPVSAVIRLFEEKEAQLKKELNLE NEDSVVKKKDNRINRDLGDF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21268; Mature: 21137
Theoretical pI: Translated: 9.00; Mature: 9.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDRELIKQKKEALIEMTNGFADRYLDEDYKMLCRKLIDKMSRKRKVPFISGKLEIWAAA CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHH IVYSLGQINFLFDKSFEPYVSATDLCNYFGTSQSTTSQKAKIIRDMFKMRYFDEEFSTKR HHHHHHHHHEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH MLKENPLNEFVMINGLIVPVSAVIRLFEEKEAQLKKELNLENEDSVVKKKDNRINRDLGD HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC F C >Mature Secondary Structure SDRELIKQKKEALIEMTNGFADRYLDEDYKMLCRKLIDKMSRKRKVPFISGKLEIWAAA CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHH IVYSLGQINFLFDKSFEPYVSATDLCNYFGTSQSTTSQKAKIIRDMFKMRYFDEEFSTKR HHHHHHHHHEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH MLKENPLNEFVMINGLIVPVSAVIRLFEEKEAQLKKELNLENEDSVVKKKDNRINRDLGD HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC F C
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA