| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21226111
Identifier: 21226111
GI number: 21226111
Start: 9608
End: 10900
Strand: Reverse
Name: 21226111
Synonym: MM_0009
Alternate gene names: NA
Gene position: 10900-9608 (Counterclockwise)
Preceding gene: 21226112
Following gene: 21226110
Centisome position: 0.27
GC content: 51.12
Gene sequence:
>1293_bases ATGCGTCTGGTTCAGGTACTTATTCCTGTGGGGAAGAGGCAGCCTGTGCTGGCAGTTCTGGATGACGAGGGAATAGACTA TGCCGTATGGGGCGAAACAGGAAGAAAGGACTTTGAGGCCCTTGTTCAGTTTCCAGTCCCTCCTATTGGCGTGGAACCGG TGCTTGAGAGGTTGCGCAAAGCCGGGGTCAGCGAAAACACTTATACAATCGTCCTGGCGCCTGAAACTGTAGTCTCGACC CGCATCGAAGCTCTGAAGCAGCGTTATTCCGGATCCCGAATCTCAAGGGAAGAATTAACTGCGCGCGCAGAGGACCTTGC ACCCGAAACTTCGACCTATATTGCATTTCTTGTCCTGAGTACGGTTATTGCAACCGGCGGTCTCCTGCTCGATTCGGCTG CAACAATTATCGGGGCTATGGTTGTGGCTCCGCTTATGGGGCCTGCCATATCTGCGAGTGTAGGGACTGTCCTCGATAAC AGGAAACTTGCTTCCAGAGGGATAAAGATGCAGGTGGGAGGGCTTCTGCTTGCAATTGCGATAGGTGCACTGCTTGGAGT ACTTCTGAAAGAATCCATACTTTTGCCTCCCGGTCTCGATATTCGTGAAATCCCACAGGTCGCCGAAAGGACAAGCCCTA ACTTTCTGTCCCTTTTCCTTGCCCTGGGGTCAGGCATAGCAGGCGCTATCAGTATAATACGGGGTTCAGGGTCTGCTCTT GTAGGGGTTGCAATTGCGATCGCTCTTGTCCCTCCGGCTGCAACTTCAGGGCTGGGAATCGCATGGGGGCTTTCCGGAGT GGCAATTGCAGCTGCCGTGCTTGTGCTTGTTAATCTGCTTGCAGTTAACATCTCAGCTCTGATAATGCTCTGGATTTCCG GTTTTCGCCCGGAAGGAACAGAAGCAGCCGGACGTGCTCGTTCTTCTGTGATATCGCATACTGTTTTCCTTGCCCTTTTA ATTGCCTTACTTTCCGTAGCTCTCGGGCTTGTTACGTATACTTCCTTCCAGGCAACCCTTGTAGAACAGGAAATAAACGG AGAAATGACAGCCATGTTTCAGGAACCCGAATATGCAGAAATGGGTCTGACACTTGAAGGGGTTACAGTTGACTATATGC CTGCAGATATCCTCTTAAATAAACCTGCAAAGATCTCTGTTCTTGTAGGCCGTAGAGCAGGCCAGGAGGTCCCTCCTGAC ATAGCCCGCAAAGCGAACATGCGCCTGACAGAATCTACGGGCAAAGATATCATGATCAGAGTTGGTTTCGTAGAAGCACA GAGCTTCCCATAA
Upstream 100 bases:
>100_bases CAAACACCTGGCTACTATAAGTTATATTTTTTTGTAATTTATACTGCATGTTTTATTTTATTCTGGTTAATAATAATTAT TCGAATAGCGTATATTTATT
Downstream 100 bases:
>100_bases TTGCCTTCTTATAATTAAATTCTAACTTTTATTAGTCTGTATTTTTACCTGAAAATTCTAGCTTCTTGCTGCTGCCTGTT TTATTTCACCTTCAATTATA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 430; Mature: 430
Protein sequence:
>430_residues MRLVQVLIPVGKRQPVLAVLDDEGIDYAVWGETGRKDFEALVQFPVPPIGVEPVLERLRKAGVSENTYTIVLAPETVVST RIEALKQRYSGSRISREELTARAEDLAPETSTYIAFLVLSTVIATGGLLLDSAATIIGAMVVAPLMGPAISASVGTVLDN RKLASRGIKMQVGGLLLAIAIGALLGVLLKESILLPPGLDIREIPQVAERTSPNFLSLFLALGSGIAGAISIIRGSGSAL VGVAIAIALVPPAATSGLGIAWGLSGVAIAAAVLVLVNLLAVNISALIMLWISGFRPEGTEAAGRARSSVISHTVFLALL IALLSVALGLVTYTSFQATLVEQEINGEMTAMFQEPEYAEMGLTLEGVTVDYMPADILLNKPAKISVLVGRRAGQEVPPD IARKANMRLTESTGKDIMIRVGFVEAQSFP
Sequences:
>Translated_430_residues MRLVQVLIPVGKRQPVLAVLDDEGIDYAVWGETGRKDFEALVQFPVPPIGVEPVLERLRKAGVSENTYTIVLAPETVVST RIEALKQRYSGSRISREELTARAEDLAPETSTYIAFLVLSTVIATGGLLLDSAATIIGAMVVAPLMGPAISASVGTVLDN RKLASRGIKMQVGGLLLAIAIGALLGVLLKESILLPPGLDIREIPQVAERTSPNFLSLFLALGSGIAGAISIIRGSGSAL VGVAIAIALVPPAATSGLGIAWGLSGVAIAAAVLVLVNLLAVNISALIMLWISGFRPEGTEAAGRARSSVISHTVFLALL IALLSVALGLVTYTSFQATLVEQEINGEMTAMFQEPEYAEMGLTLEGVTVDYMPADILLNKPAKISVLVGRRAGQEVPPD IARKANMRLTESTGKDIMIRVGFVEAQSFP >Mature_430_residues MRLVQVLIPVGKRQPVLAVLDDEGIDYAVWGETGRKDFEALVQFPVPPIGVEPVLERLRKAGVSENTYTIVLAPETVVST RIEALKQRYSGSRISREELTARAEDLAPETSTYIAFLVLSTVIATGGLLLDSAATIIGAMVVAPLMGPAISASVGTVLDN RKLASRGIKMQVGGLLLAIAIGALLGVLLKESILLPPGLDIREIPQVAERTSPNFLSLFLALGSGIAGAISIIRGSGSAL VGVAIAIALVPPAATSGLGIAWGLSGVAIAAAVLVLVNLLAVNISALIMLWISGFRPEGTEAAGRARSSVISHTVFLALL IALLSVALGLVTYTSFQATLVEQEINGEMTAMFQEPEYAEMGLTLEGVTVDYMPADILLNKPAKISVLVGRRAGQEVPPD IARKANMRLTESTGKDIMIRVGFVEAQSFP
Specific function: Unknown
COG id: COG1808
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Drosophila melanogaster, GI20129117, Length=161, Percent_Identity=31.6770186335404, Blast_Score=75, Evalue=7e-14, Organism=Drosophila melanogaster, GI19921100, Length=192, Percent_Identity=32.2916666666667, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI281364738, Length=159, Percent_Identity=30.188679245283, Blast_Score=72, Evalue=9e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005233 - InterPro: IPR013031 - InterPro: IPR005240 [H]
Pfam domain/function: PF04087 DUF389 [H]
EC number: NA
Molecular weight: Translated: 45162; Mature: 45162
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLVQVLIPVGKRQPVLAVLDDEGIDYAVWGETGRKDFEALVQFPVPPIGVEPVLERLRK CCCEEEECCCCCCCCEEEEECCCCCCEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHH AGVSENTYTIVLAPETVVSTRIEALKQRYSGSRISREELTARAEDLAPETSTYIAFLVLS CCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH TVIATGGLLLDSAATIIGAMVVAPLMGPAISASVGTVLDNRKLASRGIKMQVGGLLLAIA HHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHCCCEEHHHHHHHHHH IGALLGVLLKESILLPPGLDIREIPQVAERTSPNFLSLFLALGSGIAGAISIIRGSGSAL HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCCHH VGVAIAIALVPPAATSGLGIAWGLSGVAIAAAVLVLVNLLAVNISALIMLWISGFRPEGT HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC EAAGRARSSVISHTVFLALLIALLSVALGLVTYTSFQATLVEQEINGEMTAMFQEPEYAE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHH MGLTLEGVTVDYMPADILLNKPAKISVLVGRRAGQEVPPDIARKANMRLTESTGKDIMIR CCEEEECCEEECCCHHHEECCCCEEEEEEECCCCCCCCHHHHHHCCCEEECCCCCEEEEE VGFVEAQSFP EEEEECCCCC >Mature Secondary Structure MRLVQVLIPVGKRQPVLAVLDDEGIDYAVWGETGRKDFEALVQFPVPPIGVEPVLERLRK CCCEEEECCCCCCCCEEEEECCCCCCEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHH AGVSENTYTIVLAPETVVSTRIEALKQRYSGSRISREELTARAEDLAPETSTYIAFLVLS CCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH TVIATGGLLLDSAATIIGAMVVAPLMGPAISASVGTVLDNRKLASRGIKMQVGGLLLAIA HHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHCCCEEHHHHHHHHHH IGALLGVLLKESILLPPGLDIREIPQVAERTSPNFLSLFLALGSGIAGAISIIRGSGSAL HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCCHH VGVAIAIALVPPAATSGLGIAWGLSGVAIAAAVLVLVNLLAVNISALIMLWISGFRPEGT HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC EAAGRARSSVISHTVFLALLIALLSVALGLVTYTSFQATLVEQEINGEMTAMFQEPEYAE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHH MGLTLEGVTVDYMPADILLNKPAKISVLVGRRAGQEVPPDIARKANMRLTESTGKDIMIR CCEEEECCEEECCCHHHEECCCCEEEEEEECCCCCCCCHHHHHHCCCEEECCCCCEEEEE VGFVEAQSFP EEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]