| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21226110
Identifier: 21226110
GI number: 21226110
Start: 8186
End: 9343
Strand: Reverse
Name: 21226110
Synonym: MM_0008
Alternate gene names: NA
Gene position: 9343-8186 (Counterclockwise)
Preceding gene: 21226111
Following gene: NA
Centisome position: 0.23
GC content: 49.48
Gene sequence:
>1158_bases GTGCCTCCTGTCGGAGTCGAACCTTTGCTTGAAAAGCTGCGCAAGGCAGGAATTAGCGAGGATACATATACGATTGTCCT GTCACCGGAGATGGTGATTTCGAAGCGGATCGATGTCCTGAAAAAACGCTTTCCTGACCAGCGGATTTCCAGAGAAGAGC TCATTGCGCGTGCAGAAGATCTTGCCCCTCCTGCCTCAACATATATCGCATTTCTGGTGCTGAGCACGGCTATTGCAACC GGCGGTCTCCTGCTCGATTCGGCTGCAACAATTATCGGGGCCATGGTTATAGCTCCTTTAATGGGACCTGCAATCTCTAC AAGTGTAGGTACAGTTGTTTATGATCGGAAGCTTATTACTCGCGGGTTAACTCTGCAGGTGGCAGGCCTTTTGCTTGCAA TTGCAGTAGGTGCCTTTATCGGCTTTCTGATCACGGAATTAGGCATGATGCCGCCAGGAATAGATATCCGCGAGATTTCA CAGGTAGCTGAGCGCACAAACCCAACCTTCCTGTCTCTATTTCTTGCTCTGGGATCCGGTATTGCAGGTGCCATAAGTAT CATAAGAAATGCAGGGTCTGCTCTTGTAGGGGTTGCGATTGCAGCTGCCCTTGTCCCTCCCGCAGCAACTTCAGGGCTTG GGTTTGCGTTTGGGCTACCTGCTGTAGCGATTATTTCTGCGGTTCTGGTGCTGGTGAATGTGCTTGCTATCAATATCTCC GCTCTTATCCTTTTCTGGCTTTCAGGCTTCAGGCCCCTCGGATCTTCGGCTGTAGGCAGAGCCCGTAAAGCTGTGGTCTT GAATATTCTGGTGCTCGGAGTAGCAATAGCAATACTTTCAACTGTACTCGGGCTTGTAACCTATGTATCCTCACAAACCG CGCTTATAGAACAGCAGGCAAAAGCAGAAGTATCAGTTATGCTTAATGAATCCGAATATGAGGATATGAGACTGGTCACT GAGAGTGTAGATGTCAGTTATAGACCTGCGGACCTGATTTTAAATGAACCTGCAAGGGTAACAGTCATTTTATATCGCAG GGCAGGTCAGGAACTGCCCCCGGGTATAGCTCAGAGGATTGATGACCGCCTGACAGAGTTTACAGGCAGAGAAGTCAGGG TCAGGGTAGGGTTCATAGAAGCTCAGCAGACCACTTGA
Upstream 100 bases:
>100_bases GAAAGATTCTGTACTGTAAGCTCTCGACAGCGAGGAGATTGACTACGCAGTATGGAACGAGACCGGAAGAGGAGACTTTG AAGCTGTTATCCAGTTTCCC
Downstream 100 bases:
>100_bases AAACTCTTTATAGCTCTAAAAAAATTGAAAAAATCAGCTCATCAATAGTGTCAGACTTTCAATAGTGTCAGACTTTCAAT AGTGTCAGACCCTGTTCACA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 385; Mature: 384
Protein sequence:
>385_residues MPPVGVEPLLEKLRKAGISEDTYTIVLSPEMVISKRIDVLKKRFPDQRISREELIARAEDLAPPASTYIAFLVLSTAIAT GGLLLDSAATIIGAMVIAPLMGPAISTSVGTVVYDRKLITRGLTLQVAGLLLAIAVGAFIGFLITELGMMPPGIDIREIS QVAERTNPTFLSLFLALGSGIAGAISIIRNAGSALVGVAIAAALVPPAATSGLGFAFGLPAVAIISAVLVLVNVLAINIS ALILFWLSGFRPLGSSAVGRARKAVVLNILVLGVAIAILSTVLGLVTYVSSQTALIEQQAKAEVSVMLNESEYEDMRLVT ESVDVSYRPADLILNEPARVTVILYRRAGQELPPGIAQRIDDRLTEFTGREVRVRVGFIEAQQTT
Sequences:
>Translated_385_residues MPPVGVEPLLEKLRKAGISEDTYTIVLSPEMVISKRIDVLKKRFPDQRISREELIARAEDLAPPASTYIAFLVLSTAIAT GGLLLDSAATIIGAMVIAPLMGPAISTSVGTVVYDRKLITRGLTLQVAGLLLAIAVGAFIGFLITELGMMPPGIDIREIS QVAERTNPTFLSLFLALGSGIAGAISIIRNAGSALVGVAIAAALVPPAATSGLGFAFGLPAVAIISAVLVLVNVLAINIS ALILFWLSGFRPLGSSAVGRARKAVVLNILVLGVAIAILSTVLGLVTYVSSQTALIEQQAKAEVSVMLNESEYEDMRLVT ESVDVSYRPADLILNEPARVTVILYRRAGQELPPGIAQRIDDRLTEFTGREVRVRVGFIEAQQTT >Mature_384_residues PPVGVEPLLEKLRKAGISEDTYTIVLSPEMVISKRIDVLKKRFPDQRISREELIARAEDLAPPASTYIAFLVLSTAIATG GLLLDSAATIIGAMVIAPLMGPAISTSVGTVVYDRKLITRGLTLQVAGLLLAIAVGAFIGFLITELGMMPPGIDIREISQ VAERTNPTFLSLFLALGSGIAGAISIIRNAGSALVGVAIAAALVPPAATSGLGFAFGLPAVAIISAVLVLVNVLAINISA LILFWLSGFRPLGSSAVGRARKAVVLNILVLGVAIAILSTVLGLVTYVSSQTALIEQQAKAEVSVMLNESEYEDMRLVTE SVDVSYRPADLILNEPARVTVILYRRAGQELPPGIAQRIDDRLTEFTGREVRVRVGFIEAQQTT
Specific function: Unknown
COG id: COG1808
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Drosophila melanogaster, GI20129117, Length=153, Percent_Identity=32.6797385620915, Blast_Score=78, Evalue=1e-14, Organism=Drosophila melanogaster, GI19921100, Length=174, Percent_Identity=33.9080459770115, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI281364738, Length=217, Percent_Identity=27.1889400921659, Blast_Score=73, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005233 - InterPro: IPR013031 - InterPro: IPR005240 [H]
Pfam domain/function: PF04087 DUF389 [H]
EC number: NA
Molecular weight: Translated: 40676; Mature: 40544
Theoretical pI: Translated: 5.55; Mature: 5.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPVGVEPLLEKLRKAGISEDTYTIVLSPEMVISKRIDVLKKRFPDQRISREELIARAED CCCCCHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHH LAPPASTYIAFLVLSTAIATGGLLLDSAATIIGAMVIAPLMGPAISTSVGTVVYDRKLIT CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH RGLTLQVAGLLLAIAVGAFIGFLITELGMMPPGIDIREISQVAERTNPTFLSLFLALGSG CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCC IAGAISIIRNAGSALVGVAIAAALVPPAATSGLGFAFGLPAVAIISAVLVLVNVLAINIS HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH ALILFWLSGFRPLGSSAVGRARKAVVLNILVLGVAIAILSTVLGLVTYVSSQTALIEQQA HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH KAEVSVMLNESEYEDMRLVTESVDVSYRPADLILNEPARVTVILYRRAGQELPPGIAQRI HHHHHEEECCCCHHHHHHHHHHCCCCCCCHHHEECCCCEEEEEEEECCCCCCCCHHHHHH DDRLTEFTGREVRVRVGFIEAQQTT HHHHHHHCCCEEEEEEEEEECCCCC >Mature Secondary Structure PPVGVEPLLEKLRKAGISEDTYTIVLSPEMVISKRIDVLKKRFPDQRISREELIARAED CCCCHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHH LAPPASTYIAFLVLSTAIATGGLLLDSAATIIGAMVIAPLMGPAISTSVGTVVYDRKLIT CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH RGLTLQVAGLLLAIAVGAFIGFLITELGMMPPGIDIREISQVAERTNPTFLSLFLALGSG CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCC IAGAISIIRNAGSALVGVAIAAALVPPAATSGLGFAFGLPAVAIISAVLVLVNVLAINIS HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH ALILFWLSGFRPLGSSAVGRARKAVVLNILVLGVAIAILSTVLGLVTYVSSQTALIEQQA HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH KAEVSVMLNESEYEDMRLVTESVDVSYRPADLILNEPARVTVILYRRAGQELPPGIAQRI HHHHHEEECCCCHHHHHHHHHHCCCCCCCHHHEECCCCEEEEEEEECCCCCCCCHHHHHH DDRLTEFTGREVRVRVGFIEAQQTT HHHHHHHCCCEEEEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]