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The map label for this gene is rpoE1 [H]

Identifier: 212225065

GI number: 212225065

Start: 1801328

End: 1801894

Strand: Reverse

Name: rpoE1 [H]

Synonym: TON_1913

Alternate gene names: 212225065

Gene position: 1801894-1801328 (Counterclockwise)

Preceding gene: 212225066

Following gene: 212225064

Centisome position: 97.53

GC content: 52.73

Gene sequence:

>567_bases
ATGTACAAGCTCCTGAAGATTAAGGATGTTGTAAGGATTCCCCCCCGGATGTTCACCATGGATCCCAAGGAGGCGGCAAA
GATAGTCCTCAGGGAAACTTACGAGGGTATCTACGACAGGGATGAGGGGGTTATTTTAGCCGTCATGGATGTTGAAGAGA
TAAGCCAGGGTGTCGTCGTTCCCGGCGATGGCGCAACCTACCACGAGGTTGTCTTCGACGTCCTCGTCTGGAAGCCCGAG
ATGCACGAGGTTGTTGAGGGAGAGGTTATAGACGTCGCTCCCTACGGAGCCTTCATAAGGATCGGTCCGATGGACGGTCT
CGTTCACATCTCACAGCTTATGGACGATTACGTAGTCTTCGACGAGAAGAACAAGCAGTTCCTCGGTAAGGAGACCAAGA
GAATCCTCAAGCTTGGAGACGAGGTCAAAGCGAGAATTATAGCGATAAGCATTAAGAGCCGCGTTATCAGGGAGAATAAG
ATAGGCCTCACCATGCGCCAGCCCGGCCTTGGCAAGTCCGACTGGATAGCTAAGGAGAAGCGCAAGGAGGAGGCTGAGGA
GGCATGA

Upstream 100 bases:

>100_bases
CAAGAGGGAAATCCTCAGGGCCATCGAGATGTACAAAGAGAAGTTCGGTAAGAAGGAGTGATTTCTTTCCTCTTATTCCC
TTCACCAAGGAGGTAAAGGC

Downstream 100 bases:

>100_bases
AGGAGCGCGCCTGCAGGCACTGCCACTACATAACCACGGAAGACCGCTGCCCTGTCTGCGGCAGCAGGGATCTGAGCGAC
GAGTGGTTCGACCTCGTCAT

Product: DNA-directed RNA polymerase subunit E'

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MYKLLKIKDVVRIPPRMFTMDPKEAAKIVLRETYEGIYDRDEGVILAVMDVEEISQGVVVPGDGATYHEVVFDVLVWKPE
MHEVVEGEVIDVAPYGAFIRIGPMDGLVHISQLMDDYVVFDEKNKQFLGKETKRILKLGDEVKARIIAISIKSRVIRENK
IGLTMRQPGLGKSDWIAKEKRKEEAEEA

Sequences:

>Translated_188_residues
MYKLLKIKDVVRIPPRMFTMDPKEAAKIVLRETYEGIYDRDEGVILAVMDVEEISQGVVVPGDGATYHEVVFDVLVWKPE
MHEVVEGEVIDVAPYGAFIRIGPMDGLVHISQLMDDYVVFDEKNKQFLGKETKRILKLGDEVKARIIAISIKSRVIRENK
IGLTMRQPGLGKSDWIAKEKRKEEAEEA
>Mature_188_residues
MYKLLKIKDVVRIPPRMFTMDPKEAAKIVLRETYEGIYDRDEGVILAVMDVEEISQGVVVPGDGATYHEVVFDVLVWKPE
MHEVVEGEVIDVAPYGAFIRIGPMDGLVHISQLMDDYVVFDEKNKQFLGKETKRILKLGDEVKARIIAISIKSRVIRENK
IGLTMRQPGLGKSDWIAKEKRKEEAEEA

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1095

COG function: function code K; DNA-directed RNA polymerase, subunit E'

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR022967
- InterPro:   IPR005576
- InterPro:   IPR004519 [H]

Pfam domain/function: PF03876 RNA_pol_Rpb7_N; PF00575 S1 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 21400; Mature: 21400

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKLLKIKDVVRIPPRMFTMDPKEAAKIVLRETYEGIYDRDEGVILAVMDVEEISQGVVV
CCCCHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHCCEEE
PGDGATYHEVVFDVLVWKPEMHEVVEGEVIDVAPYGAFIRIGPMDGLVHISQLMDDYVVF
CCCCCHHHHHHHHHHHCCCHHHHHHCCCEEEEECCCCEEEECCCHHHHHHHHHHHHHEEE
DEKNKQFLGKETKRILKLGDEVKARIIAISIKSRVIRENKIGLTMRQPGLGKSDWIAKEK
ECCCCHHHHHHHHHHHHCCCHHEEEEEEEEHHHHHHHCCCCCEEEECCCCCCHHHHHHHH
RKEEAEEA
HHHHHCCC
>Mature Secondary Structure
MYKLLKIKDVVRIPPRMFTMDPKEAAKIVLRETYEGIYDRDEGVILAVMDVEEISQGVVV
CCCCHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHCCEEE
PGDGATYHEVVFDVLVWKPEMHEVVEGEVIDVAPYGAFIRIGPMDGLVHISQLMDDYVVF
CCCCCHHHHHHHHHHHCCCHHHHHHCCCEEEEECCCCEEEECCCHHHHHHHHHHHHHEEE
DEKNKQFLGKETKRILKLGDEVKARIIAISIKSRVIRENKIGLTMRQPGLGKSDWIAKEK
ECCCCHHHHHHHHHHHHCCCHHEEEEEEEEHHHHHHHCCCCCEEEECCCCCCHHHHHHHH
RKEEAEEA
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]