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The map label for this gene is pdaD [H]

Identifier: 212224474

GI number: 212224474

Start: 1201419

End: 1201937

Strand: Reverse

Name: pdaD [H]

Synonym: TON_1323

Alternate gene names: 212224474

Gene position: 1201937-1201419 (Counterclockwise)

Preceding gene: 212224475

Following gene: 212224473

Centisome position: 65.05

GC content: 55.68

Gene sequence:

>519_bases
ATGTATAACCGTCTAATCCGTGAGAAAGGAAAGGAGGAAGTTGGGATGAGCTGGACGACCCCGAAAAGAGCCTTTATAGG
TGCCGCCACCGCAGAAGGTGGGACTAAACTTAACGCTTTCGATAACGCCCTCCTCAAGTTGGGCATAGGCAATGTCAACC
TCGTTAAGCTGAGTAGCGTCATACCCGCTCACATCGAGTGGATCGACCAAGTCCACGACGTCCCAATAGGAATGCTCCTG
CCGACAGTCTATGCGCACATCGAGAGCGACGAGCCCGGGATGACCATCAGCGCCGCTCTTGGCATTGGCATCAGTGAGGG
CAATGCAGGCGGACTAATCTACGAGTACGCCGGATACTGCACCAAGGAAGAGGCCGAGGAAATGGTCAGGAAGATGGTCG
AGGAGGGCTTTCGTGTCAGGGGCTGGAAGCTGAAGGAGTTCAAGGTCGCCTCGGCCGAAATAACCGTCAGGGACAAGCCG
GCTGCGGCCATAGCCGCTGTCGTAATGTTCCCCTACTGA

Upstream 100 bases:

>100_bases
CAATGTTTTCCCAAGAGAAAGATTTTTTGACGTTCTTTCCAATATAGCGAAACGTTTTTAAGTCCCCTACAGAGTAGCGA
GTGAGCGAATCCTTGCTTTG

Downstream 100 bases:

>100_bases
GGGTTTAGTTTTTAAGCCCTTTCCCTTCTTCAGCTTTTAGAGGTGGAACTTATGGGATTTAACGAGCAGGAGAATGCATT
CATCGAGTGGTATCCAAGGG

Product: pyruvoyl-dependent arginine decarboxylase

Products: NA

Alternate protein names: PvlArgDC [H]

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MYNRLIREKGKEEVGMSWTTPKRAFIGAATAEGGTKLNAFDNALLKLGIGNVNLVKLSSVIPAHIEWIDQVHDVPIGMLL
PTVYAHIESDEPGMTISAALGIGISEGNAGGLIYEYAGYCTKEEAEEMVRKMVEEGFRVRGWKLKEFKVASAEITVRDKP
AAAIAAVVMFPY

Sequences:

>Translated_172_residues
MYNRLIREKGKEEVGMSWTTPKRAFIGAATAEGGTKLNAFDNALLKLGIGNVNLVKLSSVIPAHIEWIDQVHDVPIGMLL
PTVYAHIESDEPGMTISAALGIGISEGNAGGLIYEYAGYCTKEEAEEMVRKMVEEGFRVRGWKLKEFKVASAEITVRDKP
AAAIAAVVMFPY
>Mature_172_residues
MYNRLIREKGKEEVGMSWTTPKRAFIGAATAEGGTKLNAFDNALLKLGIGNVNLVKLSSVIPAHIEWIDQVHDVPIGMLL
PTVYAHIESDEPGMTISAALGIGISEGNAGGLIYEYAGYCTKEEAEEMVRKMVEEGFRVRGWKLKEFKVASAEITVRDKP
AAAIAAVVMFPY

Specific function: Unknown

COG id: COG1945

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdaD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016104
- InterPro:   IPR016105
- InterPro:   IPR002724
- ProDom:   PD010449 [H]

Pfam domain/function: PF01862 PvlArgDC [H]

EC number: =4.1.1.19 [H]

Molecular weight: Translated: 18759; Mature: 18759

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNRLIREKGKEEVGMSWTTPKRAFIGAATAEGGTKLNAFDNALLKLGIGNVNLVKLSSV
CCCHHHHHCCCHHCCCCCCCCCHHEEEEEECCCCCEEHHHHHHEEEECCCCEEEEEECCH
IPAHIEWIDQVHDVPIGMLLPTVYAHIESDEPGMTISAALGIGISEGNAGGLIYEYAGYC
HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCCCEEEECCCCC
TKEEAEEMVRKMVEEGFRVRGWKLKEFKVASAEITVRDKPAAAIAAVVMFPY
CHHHHHHHHHHHHHCCCEECCEEEEEEEEECEEEEECCCCHHHEEEEEECCC
>Mature Secondary Structure
MYNRLIREKGKEEVGMSWTTPKRAFIGAATAEGGTKLNAFDNALLKLGIGNVNLVKLSSV
CCCHHHHHCCCHHCCCCCCCCCHHEEEEEECCCCCEEHHHHHHEEEECCCCEEEEEECCH
IPAHIEWIDQVHDVPIGMLLPTVYAHIESDEPGMTISAALGIGISEGNAGGLIYEYAGYC
HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCCCEEEECCCCC
TKEEAEEMVRKMVEEGFRVRGWKLKEFKVASAEITVRDKPAAAIAAVVMFPY
CHHHHHHHHHHHHHCCCEECCEEEEEEEEECEEEEECCCCHHHEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA