Click here to switch to the map view.

The map label for this gene is ydcA [H]

Identifier: 212224193

GI number: 212224193

Start: 966022

End: 966630

Strand: Reverse

Name: ydcA [H]

Synonym: TON_1044

Alternate gene names: 212224193

Gene position: 966630-966022 (Counterclockwise)

Preceding gene: 212224194

Following gene: 212224192

Centisome position: 52.32

GC content: 50.74

Gene sequence:

>609_bases
ATGATCTTTAAAGGCTCCACAATGAAATACGGGAAGGTCACAACGGCGCTCTTCGTGATTAACGTTGTCGTTTACATTTT
CGAGGCCATACTGAGTGGTAACCCCATAGACATCAGCATCGAGGTTCTTGCCAGAATCGGTCAGTGGAACTATGCAGTCC
TTAATGGTGCTTGGTGGCAGCTCTTCACCGCCATGTTCGTTCACGTGGGAATACTTCACATAGTCTTCAACATGTACTTC
CTCCTTATGCTTGGCAGTCAGCTGGAACGCCTTTTCGGGGGCAGGGTTCTTGTCTTTACTTACTTGGCCGCTGGTCTTGT
CGGTAATCTGGTCACGCTCTTCCTCCTCCCGCCGAACTCGATCAGCGCCGGCGCGAGTGGGGCTCTCTTCGGAATCGTAG
GCGTTCTGATAATGGTATCGGGGATACTCGGTGGCAACATCCAGAGTGTCTTCGTGAATGCTTTCATCCTCTTCCTGATA
AACAGCATGTTTCCGGGAGTAAACGCCTATGCCCACCTGGGAGGCCTCATAACTGGCATCCTGCTTGGTCTCCACTATGG
CAAGAAACTCAAGAAAAAACTCGTGGCAATGACCTACAGCTATGCCTAG

Upstream 100 bases:

>100_bases
GGAAACGAGCTCAAGCTCAACCTCAGCGCCACGGAGACAACCAATCTAATAGCTGTGAATGACAGATATTTACTTGACCT
AATTCTGGAGGAACTCGCCA

Downstream 100 bases:

>100_bases
TGAACGAAAGATTTAAAAATACCCCCCGAAAGGTATAACCCGGGCGCTTGTGCCGGGGTAGCTTAGCCTGGTCAGAGCGC
TCGGCTCATAGGGCCGCTCC

Product: integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MIFKGSTMKYGKVTTALFVINVVVYIFEAILSGNPIDISIEVLARIGQWNYAVLNGAWWQLFTAMFVHVGILHIVFNMYF
LLMLGSQLERLFGGRVLVFTYLAAGLVGNLVTLFLLPPNSISAGASGALFGIVGVLIMVSGILGGNIQSVFVNAFILFLI
NSMFPGVNAYAHLGGLITGILLGLHYGKKLKKKLVAMTYSYA

Sequences:

>Translated_202_residues
MIFKGSTMKYGKVTTALFVINVVVYIFEAILSGNPIDISIEVLARIGQWNYAVLNGAWWQLFTAMFVHVGILHIVFNMYF
LLMLGSQLERLFGGRVLVFTYLAAGLVGNLVTLFLLPPNSISAGASGALFGIVGVLIMVSGILGGNIQSVFVNAFILFLI
NSMFPGVNAYAHLGGLITGILLGLHYGKKLKKKLVAMTYSYA
>Mature_202_residues
MIFKGSTMKYGKVTTALFVINVVVYIFEAILSGNPIDISIEVLARIGQWNYAVLNGAWWQLFTAMFVHVGILHIVFNMYF
LLMLGSQLERLFGGRVLVFTYLAAGLVGNLVTLFLLPPNSISAGASGALFGIVGVLIMVSGILGGNIQSVFVNAFILFLI
NSMFPGVNAYAHLGGLITGILLGLHYGKKLKKKLVAMTYSYA

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S54 family [H]

Homologues:

Organism=Homo sapiens, GI190341097, Length=135, Percent_Identity=29.6296296296296, Blast_Score=68, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI115532986, Length=132, Percent_Identity=28.7878787878788, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI133901888, Length=132, Percent_Identity=28.7878787878788, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002610
- InterPro:   IPR022764 [H]

Pfam domain/function: PF01694 Rhomboid [H]

EC number: NA

Molecular weight: Translated: 21904; Mature: 21904

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFKGSTMKYGKVTTALFVINVVVYIFEAILSGNPIDISIEVLARIGQWNYAVLNGAWWQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCCHHHHHHHHHH
LFTAMFVHVGILHIVFNMYFLLMLGSQLERLFGGRVLVFTYLAAGLVGNLVTLFLLPPNS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEECCCC
ISAGASGALFGIVGVLIMVSGILGGNIQSVFVNAFILFLINSMFPGVNAYAHLGGLITGI
CCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LLGLHYGKKLKKKLVAMTYSYA
HHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIFKGSTMKYGKVTTALFVINVVVYIFEAILSGNPIDISIEVLARIGQWNYAVLNGAWWQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCCHHHHHHHHHH
LFTAMFVHVGILHIVFNMYFLLMLGSQLERLFGGRVLVFTYLAAGLVGNLVTLFLLPPNS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEECCCC
ISAGASGALFGIVGVLIMVSGILGGNIQSVFVNAFILFLINSMFPGVNAYAHLGGLITGI
CCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LLGLHYGKKLKKKLVAMTYSYA
HHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]