| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209696429
Identifier: 209696429
GI number: 209696429
Start: 3294823
End: 3295386
Strand: Direct
Name: 209696429
Synonym: VSAL_I3043
Alternate gene names: NA
Gene position: 3294823-3295386 (Clockwise)
Preceding gene: 209696428
Following gene: 209696430
Centisome position: 99.09
GC content: 38.3
Gene sequence:
>564_bases ATGACGTATCTCACCGACAAGTACCTCAATCCGTTTACAGACTTTGGCTTTAAAAAGCTGTTTGGCTCTGAGGCGAATAA AACCATTCTCATTGATTTCTTAAATACGTTATTAGAAGGAGAGGAATCAACGATTGTAGATTTAACCTTTATTTCTAATG AGCAATTAGGTAAGCAGATTGTCGATCGCAGTGTGTTTTATTCGTCATTTCCTATTCAAGAGCAGGGACAAAAGGGTAAT TGGAACCTTGAAAGCTTACAAGATTATCCAGAATTGCTGACTGAAGGTGTTTTTAAGTCTTTTTTTGCAGAGGCTGAATT AGCACAATTGCCGTTAGAAAAGCAAAGAGAGTACGAGAATAGCCTCAAGTATTACCGAGATTTAAATAACGTAATAGATA CCGCGTTTGATGATGGTAAGGAGCTAGGTAAGGCCGAGGGTATAGAGCTAGGTAAGGCTGAAGGGATATTAGAAGTGGCA AGGAATTTATTGGATGTTCTTGATAATGATACCATTGCCTTGAAAACGGGGTTGAGTGTTGAAGAGATCCAAAGATTAAG ATAG
Upstream 100 bases:
>100_bases TGAACTTTGCCAGCGAAGCGAACTTAATCCTAGTTTTTGCTCTTTAATTAACCACAGTATATACTCATATTTACCTGTTT ATTCTTACAGTAGGCTTAGC
Downstream 100 bases:
>100_bases TAGGGGAAAGCAGGGTTCAGGTTTCAGGAAGATCAAAAGCGAGTGCCCCTGAAACCTCTGCGCGTAGCGTCCTGAAGCCT AGTTTTTAGTTTTTTATAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 187; Mature: 186
Protein sequence:
>187_residues MTYLTDKYLNPFTDFGFKKLFGSEANKTILIDFLNTLLEGEESTIVDLTFISNEQLGKQIVDRSVFYSSFPIQEQGQKGN WNLESLQDYPELLTEGVFKSFFAEAELAQLPLEKQREYENSLKYYRDLNNVIDTAFDDGKELGKAEGIELGKAEGILEVA RNLLDVLDNDTIALKTGLSVEEIQRLR
Sequences:
>Translated_187_residues MTYLTDKYLNPFTDFGFKKLFGSEANKTILIDFLNTLLEGEESTIVDLTFISNEQLGKQIVDRSVFYSSFPIQEQGQKGN WNLESLQDYPELLTEGVFKSFFAEAELAQLPLEKQREYENSLKYYRDLNNVIDTAFDDGKELGKAEGIELGKAEGILEVA RNLLDVLDNDTIALKTGLSVEEIQRLR >Mature_186_residues TYLTDKYLNPFTDFGFKKLFGSEANKTILIDFLNTLLEGEESTIVDLTFISNEQLGKQIVDRSVFYSSFPIQEQGQKGNW NLESLQDYPELLTEGVFKSFFAEAELAQLPLEKQREYENSLKYYRDLNNVIDTAFDDGKELGKAEGIELGKAEGILEVAR NLLDVLDNDTIALKTGLSVEEIQRLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21309; Mature: 21178
Theoretical pI: Translated: 4.14; Mature: 4.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTYLTDKYLNPFTDFGFKKLFGSEANKTILIDFLNTLLEGEESTIVDLTFISNEQLGKQI CCCCCCHHCCHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCEEEEEECCCHHHHHHH VDRSVFYSSFPIQEQGQKGNWNLESLQDYPELLTEGVFKSFFAEAELAQLPLEKQREYEN HHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH SLKYYRDLNNVIDTAFDDGKELGKAEGIELGKAEGILEVARNLLDVLDNDTIALKTGLSV HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCH EEIQRLR HHHHHCC >Mature Secondary Structure TYLTDKYLNPFTDFGFKKLFGSEANKTILIDFLNTLLEGEESTIVDLTFISNEQLGKQI CCCCCHHCCHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCEEEEEECCCHHHHHHH VDRSVFYSSFPIQEQGQKGNWNLESLQDYPELLTEGVFKSFFAEAELAQLPLEKQREYEN HHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH SLKYYRDLNNVIDTAFDDGKELGKAEGIELGKAEGILEVARNLLDVLDNDTIALKTGLSV HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCH EEIQRLR HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA