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The map label for this gene is ybfL [H]

Identifier: 209696402

GI number: 209696402

Start: 3259572

End: 3260684

Strand: Direct

Name: ybfL [H]

Synonym: VSAL_I3009

Alternate gene names: 209696402

Gene position: 3259572-3260684 (Clockwise)

Preceding gene: 209696401

Following gene: 209696403

Centisome position: 98.03

GC content: 42.41

Gene sequence:

>1113_bases
ATGCATATCGACAGCTTCAAAGAGCATTTTAAAATCATTGCTGATCAACGCCAAAGTGCGAAAGTTACTTACCCTCTGTT
TGACGTTTTATTTGGTTCTCTTTGCGCTGTGATCGCCGGTGCTAAAGGCTGGTTTGACATTCGAGAGTACATTCAAGGCC
ATCACCATTGGTTTCAAAAGAACGATATGTTCATGGTTGATATTCCTGCTGACGATACTATTGCTCGGATCATATCAACG
ATAGAGCCGGTGCAGTTTCACGAATGTTTTTTGAACTGGATGCAATCAGTACATACTTTGACTGAAGGTCAAGTGATCGC
AATTGATGGTAAAACACTTCGCGGCTCATACAACCGAGAAGACCGAGCCAGCACAATCCATATGATAAGTGCTTACGCCT
CTTCGAATAAACTGGTGCTTGGACAGATAAAAACCGACCAAAAGAGCAATGAAATTACCGCCATTCCTGAACTTTTAAAG
ATGCTAGACTTACGTGGTGCTCTAGTCACCATCGATGCGATGGCATGCCAAACAAAAATTGCCAAAGCCATAGTTAATCA
AGACGGAGACTACTTGCTTGCGGTTAAAAACAACCAAGGTCAACTGCGTAAAGCGGTAGAGAAAGCGTTTAGTCATCAAA
GAGCTACGACAGCGCAAGACATAGAATTCGAGAATGGCCATGGCCGTGTAGAGTCACGCCAGTGCTATGTGCTCAACAGT
GATGTTTTAGAAGGTAATTTCTCTCGTTGGACAGGGTTAAAAAACATCATCATGGTTGAGAGTTTCCGGTATAAAAAAGG
AAAATCCATAGGGCTAGAATATCGCTATTACATTAGCTCGAAAACATTAACAGCAGAGCAAGCAGCTAATGCTGTTCGTG
AGCATTGGGGCATAGAGTCGATGCACTGGATACTTGACGTTAGTATGAATGAAGATGCCTGTCAGATATACAAAGATAAC
GGTGCGGAAAATCTATCCTGTCTACGTCACATGGCTCTGAATATGCTTCGGGTTGAGCCAACGAAAGTGAGTATCGTCGG
AAAACAAAAGCGTTGTTTAATGAATATATCAATGCTGGAAAACGTGTTGATTGCGGGGTTGTCTAAAAACTAA

Upstream 100 bases:

>100_bases
TAAAAAGCAGGGCAAGATCGTGAACGTTTTTTAAACAAAAAAGATCGGTTTGACGATCTCATTTACTTGTGATCTTATAC
TCCTTTTTTAGGGAGCCAGT

Downstream 100 bases:

>100_bases
ACACTCATGCGGTTGCCCTGGGATAAAAAGTGTCTCAGCTCAATTCTGAAAGCGATAAAAAGCAGATGTCCAGTATTATT
GTTATAACTACAACTATGCG

Product: transposase

Products: NA

Alternate protein names: H repeat-associated protein in rhsC-phrB intergenic region; ORF-H2 [H]

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MHIDSFKEHFKIIADQRQSAKVTYPLFDVLFGSLCAVIAGAKGWFDIREYIQGHHHWFQKNDMFMVDIPADDTIARIIST
IEPVQFHECFLNWMQSVHTLTEGQVIAIDGKTLRGSYNREDRASTIHMISAYASSNKLVLGQIKTDQKSNEITAIPELLK
MLDLRGALVTIDAMACQTKIAKAIVNQDGDYLLAVKNNQGQLRKAVEKAFSHQRATTAQDIEFENGHGRVESRQCYVLNS
DVLEGNFSRWTGLKNIIMVESFRYKKGKSIGLEYRYYISSKTLTAEQAANAVREHWGIESMHWILDVSMNEDACQIYKDN
GAENLSCLRHMALNMLRVEPTKVSIVGKQKRCLMNISMLENVLIAGLSKN

Sequences:

>Translated_370_residues
MHIDSFKEHFKIIADQRQSAKVTYPLFDVLFGSLCAVIAGAKGWFDIREYIQGHHHWFQKNDMFMVDIPADDTIARIIST
IEPVQFHECFLNWMQSVHTLTEGQVIAIDGKTLRGSYNREDRASTIHMISAYASSNKLVLGQIKTDQKSNEITAIPELLK
MLDLRGALVTIDAMACQTKIAKAIVNQDGDYLLAVKNNQGQLRKAVEKAFSHQRATTAQDIEFENGHGRVESRQCYVLNS
DVLEGNFSRWTGLKNIIMVESFRYKKGKSIGLEYRYYISSKTLTAEQAANAVREHWGIESMHWILDVSMNEDACQIYKDN
GAENLSCLRHMALNMLRVEPTKVSIVGKQKRCLMNISMLENVLIAGLSKN
>Mature_370_residues
MHIDSFKEHFKIIADQRQSAKVTYPLFDVLFGSLCAVIAGAKGWFDIREYIQGHHHWFQKNDMFMVDIPADDTIARIIST
IEPVQFHECFLNWMQSVHTLTEGQVIAIDGKTLRGSYNREDRASTIHMISAYASSNKLVLGQIKTDQKSNEITAIPELLK
MLDLRGALVTIDAMACQTKIAKAIVNQDGDYLLAVKNNQGQLRKAVEKAFSHQRATTAQDIEFENGHGRVESRQCYVLNS
DVLEGNFSRWTGLKNIIMVESFRYKKGKSIGLEYRYYISSKTLTAEQAANAVREHWGIESMHWILDVSMNEDACQIYKDN
GAENLSCLRHMALNMLRVEPTKVSIVGKQKRCLMNISMLENVLIAGLSKN

Specific function: Unknown

COG id: COG5433

COG function: function code L; Transposase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 11 family [H]

Homologues:

Organism=Escherichia coli, GI1789896, Length=379, Percent_Identity=45.1187335092348, Blast_Score=317, Evalue=8e-88,
Organism=Escherichia coli, GI1787733, Length=379, Percent_Identity=44.8548812664908, Blast_Score=316, Evalue=1e-87,
Organism=Escherichia coli, GI1786924, Length=236, Percent_Identity=47.8813559322034, Blast_Score=227, Evalue=9e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002559 [H]

Pfam domain/function: PF01609 Transposase_11 [H]

EC number: NA

Molecular weight: Translated: 41969; Mature: 41969

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIDSFKEHFKIIADQRQSAKVTYPLFDVLFGSLCAVIAGAKGWFDIREYIQGHHHWFQK
CCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEECC
NDMFMVDIPADDTIARIISTIEPVQFHECFLNWMQSVHTLTEGQVIAIDGKTLRGSYNRE
CCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCEECCCCCCC
DRASTIHMISAYASSNKLVLGQIKTDQKSNEITAIPELLKMLDLRGALVTIDAMACQTKI
HHHHHHHEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEHHHHHHHHH
AKAIVNQDGDYLLAVKNNQGQLRKAVEKAFSHQRATTAQDIEFENGHGRVESRQCYVLNS
HHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCHHCCEEECCCCCCCCCEEEEEEC
DVLEGNFSRWTGLKNIIMVESFRYKKGKSIGLEYRYYISSKTLTAEQAANAVREHWGIES
HHHCCCCHHHHCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCC
MHWILDVSMNEDACQIYKDNGAENLSCLRHMALNMLRVEPTKVSIVGKQKRCLMNISMLE
EEEEEEEECCCCHHHEEECCCCCHHHHHHHHHHHHEEECCCEEEEECCCHHHHHHHHHHH
NVLIAGLSKN
HHHHHCCCCC
>Mature Secondary Structure
MHIDSFKEHFKIIADQRQSAKVTYPLFDVLFGSLCAVIAGAKGWFDIREYIQGHHHWFQK
CCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEECC
NDMFMVDIPADDTIARIISTIEPVQFHECFLNWMQSVHTLTEGQVIAIDGKTLRGSYNRE
CCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCEECCCCCCC
DRASTIHMISAYASSNKLVLGQIKTDQKSNEITAIPELLKMLDLRGALVTIDAMACQTKI
HHHHHHHEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEHHHHHHHHH
AKAIVNQDGDYLLAVKNNQGQLRKAVEKAFSHQRATTAQDIEFENGHGRVESRQCYVLNS
HHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCHHCCEEECCCCCCCCCEEEEEEC
DVLEGNFSRWTGLKNIIMVESFRYKKGKSIGLEYRYYISSKTLTAEQAANAVREHWGIES
HHHCCCCHHHHCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCC
MHWILDVSMNEDACQIYKDNGAENLSCLRHMALNMLRVEPTKVSIVGKQKRCLMNISMLE
EEEEEEEECCCCHHHEEECCCCCHHHHHHHHHHHHEEECCCEEEEECCCHHHHHHHHHHH
NVLIAGLSKN
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8387990; 8905232; 9278503 [H]