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The map label for this gene is yabD [H]

Identifier: 209696397

GI number: 209696397

Start: 3253913

End: 3254710

Strand: Reverse

Name: yabD [H]

Synonym: VSAL_I3003

Alternate gene names: 209696397

Gene position: 3254710-3253913 (Counterclockwise)

Preceding gene: 209696432

Following gene: 209696388

Centisome position: 97.88

GC content: 40.48

Gene sequence:

>798_bases
ATGATAGAAAGAGAATTTTATTTTAAGGCTTTTATCATGATAGATACGCACGCTCATATTTATGCAAAAGAATTCGATGA
CGATCGTGATGCGGTTGTTCAGCGAGCTTTAGAACAAGGTATTAATCAAATATTACTGCCAAATATCGATCTAGCATCCA
TTGAACCTATGCTTCAAACAGAAGCCGCTTACCCTGACATTTGCCGCTCAATGATGGGCTTACACCCTTGCTATGTGAAC
GCCGATGTTAAGCAAACTCTCGCAACTATTCACGCATGGTTTGAGAAGCACAACTTCATTGCAGTAGGTGAAATAGGTAT
TGACCTATACTGGGACAAAACCTTTAAAGCTGAACAAGAGATGGCATTTATCACCCAATTAAACTGGGCAAAAGAGATGA
CGTTGCCTGTTGTTATTCATACTCGTGATTCTATTGAAGAAACATTAAGCCTTCTAAAAAAAGAACAGGATGGCTCGTTA
TCAGGCACATTCCACTGTTTTGGCGGCTCGGTTGACGAAGCAAAAGCAATCAATGATCTAGGCTTTCATTTAGGATTAGG
CGGTGTTTCTACCTTTAAAAATGGCGGAATGGATAAAATCATTCCTCACTTGAATATGGATTACTTAATTCTAGAGACCG
ATTGCCCATATTTAGCACCAGTACCACACCGTGGTAAGCGTAATGAGCCAGCGTACACACAATTAGTCGCGCAACGTGTG
GCTGATTTACGTGAAATGAGCTTGGCCGATGTCGATGCGATTACGACGAAAAATGCGAAAAGACTTTTTGAGATTTAA

Upstream 100 bases:

>100_bases
ATATATACCCATCGTCTTTTGAATCCAACTATCGCCCATAAATGTTCATCATATTTCTCTTCCTTATTCTTAGAGATCTG
ATTTTTGCTATGAACTTGGT

Downstream 100 bases:

>100_bases
GAGAAAAAATAGAGTTCAGAGGTGATTGTCGTAAATGATTAATACAACTAGAAACGATACGCTTCGCTAACTATAAGATC
AAAAAAATACTGAACAATTA

Product: TatD related DNase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MIEREFYFKAFIMIDTHAHIYAKEFDDDRDAVVQRALEQGINQILLPNIDLASIEPMLQTEAAYPDICRSMMGLHPCYVN
ADVKQTLATIHAWFEKHNFIAVGEIGIDLYWDKTFKAEQEMAFITQLNWAKEMTLPVVIHTRDSIEETLSLLKKEQDGSL
SGTFHCFGGSVDEAKAINDLGFHLGLGGVSTFKNGGMDKIIPHLNMDYLILETDCPYLAPVPHRGKRNEPAYTQLVAQRV
ADLREMSLADVDAITTKNAKRLFEI

Sequences:

>Translated_265_residues
MIEREFYFKAFIMIDTHAHIYAKEFDDDRDAVVQRALEQGINQILLPNIDLASIEPMLQTEAAYPDICRSMMGLHPCYVN
ADVKQTLATIHAWFEKHNFIAVGEIGIDLYWDKTFKAEQEMAFITQLNWAKEMTLPVVIHTRDSIEETLSLLKKEQDGSL
SGTFHCFGGSVDEAKAINDLGFHLGLGGVSTFKNGGMDKIIPHLNMDYLILETDCPYLAPVPHRGKRNEPAYTQLVAQRV
ADLREMSLADVDAITTKNAKRLFEI
>Mature_265_residues
MIEREFYFKAFIMIDTHAHIYAKEFDDDRDAVVQRALEQGINQILLPNIDLASIEPMLQTEAAYPDICRSMMGLHPCYVN
ADVKQTLATIHAWFEKHNFIAVGEIGIDLYWDKTFKAEQEMAFITQLNWAKEMTLPVVIHTRDSIEETLSLLKKEQDGSL
SGTFHCFGGSVDEAKAINDLGFHLGLGGVSTFKNGGMDKIIPHLNMDYLILETDCPYLAPVPHRGKRNEPAYTQLVAQRV
ADLREMSLADVDAITTKNAKRLFEI

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=267, Percent_Identity=26.9662921348315, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI110349734, Length=267, Percent_Identity=26.5917602996255, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI226061853, Length=274, Percent_Identity=26.2773722627737, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI226061614, Length=252, Percent_Identity=26.5873015873016, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI226061595, Length=231, Percent_Identity=25.1082251082251, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI14042943, Length=205, Percent_Identity=26.3414634146341, Blast_Score=70, Evalue=3e-12,
Organism=Escherichia coli, GI1787342, Length=257, Percent_Identity=30.7392996108949, Blast_Score=141, Evalue=3e-35,
Organism=Escherichia coli, GI48994985, Length=259, Percent_Identity=30.8880308880309, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI87082439, Length=255, Percent_Identity=28.6274509803922, Blast_Score=113, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI71980746, Length=263, Percent_Identity=26.2357414448669, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17559024, Length=285, Percent_Identity=25.2631578947368, Blast_Score=92, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24648690, Length=290, Percent_Identity=26.2068965517241, Blast_Score=93, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24586117, Length=221, Percent_Identity=26.6968325791855, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI221330018, Length=221, Percent_Identity=26.6968325791855, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 29994; Mature: 29994

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEREFYFKAFIMIDTHAHIYAKEFDDDRDAVVQRALEQGINQILLPNIDLASIEPMLQT
CCCCCEEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHHCCCEEECCCCCHHHCCHHHHH
EAAYPDICRSMMGLHPCYVNADVKQTLATIHAWFEKHNFIAVGEIGIDLYWDKTFKAEQE
CCCCHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHCCEEEEEEEEEEEEECCCCCCHHH
MAFITQLNWAKEMTLPVVIHTRDSIEETLSLLKKEQDGSLSGTFHCFGGSVDEAKAINDL
HHHHHHHCCHHHCCEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHH
GFHLGLGGVSTFKNGGMDKIIPHLNMDYLILETDCPYLAPVPHRGKRNEPAYTQLVAQRV
HHHHCCCCHHHHCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH
ADLREMSLADVDAITTKNAKRLFEI
HHHHHHHHHHHHHHHCCCHHHHHCC
>Mature Secondary Structure
MIEREFYFKAFIMIDTHAHIYAKEFDDDRDAVVQRALEQGINQILLPNIDLASIEPMLQT
CCCCCEEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHHCCCEEECCCCCHHHCCHHHHH
EAAYPDICRSMMGLHPCYVNADVKQTLATIHAWFEKHNFIAVGEIGIDLYWDKTFKAEQE
CCCCHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHCCEEEEEEEEEEEEECCCCCCHHH
MAFITQLNWAKEMTLPVVIHTRDSIEETLSLLKKEQDGSLSGTFHCFGGSVDEAKAINDL
HHHHHHHCCHHHCCEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHH
GFHLGLGGVSTFKNGGMDKIIPHLNMDYLILETDCPYLAPVPHRGKRNEPAYTQLVAQRV
HHHHCCCCHHHHCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH
ADLREMSLADVDAITTKNAKRLFEI
HHHHHHHHHHHHHHHCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]