| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is yigP [H]
Identifier: 209696391
GI number: 209696391
Start: 3247263
End: 3247886
Strand: Direct
Name: yigP [H]
Synonym: VSAL_I2997
Alternate gene names: 209696391
Gene position: 3247263-3247886 (Clockwise)
Preceding gene: 209696390
Following gene: 209696392
Centisome position: 97.66
GC content: 40.87
Gene sequence:
>624_bases ATGCCATTAGATCCGTTTGTAACAGGTGTGATTGAAACGGGGTTAAACGCCCTGCTAAAAGAATCGCCAGAGAGCAAAGC TGCATTGCATCGATTAAAAGAGAAGATTATTCATGTTCATTTGAATGAGTTTAATAAAGATCTCTATTTTATTTTTAGCC AACAGCACGTTGATATCTTGTCTAAATTTGAAGGTGAGGTTGATTGTTATCTTGCGTTGAATTTGTCGGTGTTGCCGCAA TTGCGAGAGCAAAACAATATTACTCAATTAATAAAGCAAGATAAGTTAGTGCTTGAAGGTGATCTTAACCTCGCTCAGCA ATTCTCTGCATTATTAACAGAATTAAAACCGGATGTTGAAGAGAAATTGTCTCAATATACGGGAGACATTGTTGCGCATA CATTGGTGAGTGGCGTTAAAGGCAGTGCATGCTGGATTAAAAAGCAAGTGACGCGTCAAACTCGTCATGCTGCAGAAGTC CTAACGGAAGAATGGAAGATTGCCCCACCGCCTTTAGAGGTTGCGTACTTCTGCGATCAAGTGTCTGATGTTGAAAAACA CCTCGCACAATTAGACGCTCGCTTGACGCAATTATTACAGACAGCATCAATGGAGCGCGCATGA
Upstream 100 bases:
>100_bases CATGATGGAAGAGGCTGGCTTTGAGCAAGCAAACTACTACAACTTAACTGGTGGTATTGTTGCTCTGCATCGTGGTTACA AATTTTAATAGGATAAAATG
Downstream 100 bases:
>100_bases CCCCATCAGAGCTAAAACGCTTATATCAAATCACCAAGGTTCAACTTGAGTATGGATTGGATGAGCTATTGCCTGATCAT GCATTAACTCAATTACCAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 207; Mature: 206
Protein sequence:
>207_residues MPLDPFVTGVIETGLNALLKESPESKAALHRLKEKIIHVHLNEFNKDLYFIFSQQHVDILSKFEGEVDCYLALNLSVLPQ LREQNNITQLIKQDKLVLEGDLNLAQQFSALLTELKPDVEEKLSQYTGDIVAHTLVSGVKGSACWIKKQVTRQTRHAAEV LTEEWKIAPPPLEVAYFCDQVSDVEKHLAQLDARLTQLLQTASMERA
Sequences:
>Translated_207_residues MPLDPFVTGVIETGLNALLKESPESKAALHRLKEKIIHVHLNEFNKDLYFIFSQQHVDILSKFEGEVDCYLALNLSVLPQ LREQNNITQLIKQDKLVLEGDLNLAQQFSALLTELKPDVEEKLSQYTGDIVAHTLVSGVKGSACWIKKQVTRQTRHAAEV LTEEWKIAPPPLEVAYFCDQVSDVEKHLAQLDARLTQLLQTASMERA >Mature_206_residues PLDPFVTGVIETGLNALLKESPESKAALHRLKEKIIHVHLNEFNKDLYFIFSQQHVDILSKFEGEVDCYLALNLSVLPQL REQNNITQLIKQDKLVLEGDLNLAQQFSALLTELKPDVEEKLSQYTGDIVAHTLVSGVKGSACWIKKQVTRQTRHAAEVL TEEWKIAPPPLEVAYFCDQVSDVEKHLAQLDARLTQLLQTASMERA
Specific function: Unknown
COG id: COG3165
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI2367308, Length=198, Percent_Identity=39.3939393939394, Blast_Score=159, Evalue=1e-40,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003033 [H]
Pfam domain/function: PF02036 SCP2 [H]
EC number: NA
Molecular weight: Translated: 23385; Mature: 23254
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLDPFVTGVIETGLNALLKESPESKAALHRLKEKIIHVHLNEFNKDLYFIFSQQHVDIL CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHH SKFEGEVDCYLALNLSVLPQLREQNNITQLIKQDKLVLEGDLNLAQQFSALLTELKPDVE HHCCCCEEEEEEECHHHHHHHHHCCHHHHHHHHCCEEEECCCCHHHHHHHHHHHHCCCHH EKLSQYTGDIVAHTLVSGVKGSACWIKKQVTRQTRHAAEVLTEEWKIAPPPLEVAYFCDQ HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH VSDVEKHLAQLDARLTQLLQTASMERA HHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PLDPFVTGVIETGLNALLKESPESKAALHRLKEKIIHVHLNEFNKDLYFIFSQQHVDIL CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHH SKFEGEVDCYLALNLSVLPQLREQNNITQLIKQDKLVLEGDLNLAQQFSALLTELKPDVE HHCCCCEEEEEEECHHHHHHHHHCCHHHHHHHHCCEEEECCCCHHHHHHHHHHHHCCCHH EKLSQYTGDIVAHTLVSGVKGSACWIKKQVTRQTRHAAEVLTEEWKIAPPPLEVAYFCDQ HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH VSDVEKHLAQLDARLTQLLQTASMERA HHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1379743; 9278503 [H]