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The map label for this gene is glyQ

Identifier: 209696358

GI number: 209696358

Start: 3209005

End: 3209937

Strand: Direct

Name: glyQ

Synonym: VSAL_I2964

Alternate gene names: 209696358

Gene position: 3209005-3209937 (Clockwise)

Preceding gene: 209696355

Following gene: 209696359

Centisome position: 96.51

GC content: 44.91

Gene sequence:

>933_bases
ATGCAAAAATACGATATCAAAACCTTCCAGGGAATGATCCTCGCGCTGCAGGATTATTGGGCACAACAGGGTTGTACGAT
TGTACAGCCATTAGATATGGAAGTGGGCGCAGGTACATCTCACCCAATGACATGTCTGCGAGCGCTTGGCCCAGAGCCAA
TGGCTACCGCTTATGTTCAACCATCTCGTCGTCCTACGGATGGCCGTTATGGTGAAAACCCTAACCGTCTGCAGCACTAC
TATCAATTTCAGGTAGCGTTAAAGCCTTCTCCAGATAATATTCAAGAACTGTACTTAGGTTCTTTAGAAGTGCTTGGTAT
CGATCCTCTTGTTCATGATATTCGTTTCGTAGAAGACAACTGGGAAAACCCAACATTGGGTGCTTGGGGTTTAGGCTGGG
AAATCTGGCTAAACGGCATGGAAGTAACGCAATTTACTTACTTCCAACAAGTTGGCGGTCTTGAGTGTAAACCAGTAACT
GGTGAAATCACTTACGGTATCGAACGTCTTGCTATGTATATTCAAGAAGTAGGCTCGGTTTACGATCTTGTTTGGAACTA
TGGCCCTCAAGGTGTGGTTACTTATGGTGATATTTTCCACCAAAATGAAGTAGAGCAATCGACTTACAACTTTGAACACG
CCGATGTTGATTTCCTATTTGGATTCTTCGATCAGTGCGAGAAAGAGTGTAAAGAATTGCTTGAACTTGAAAAGCCGCTA
CCTCTTCCAGCGTACGAGCGCATTCTAAAAGCCGGTCATGCATTTAACTTGCTAGATGCTCGTAAAGCGATCTCTGTAAC
AGAGCGTCAGCGTTACATTCTTCGTATTCGCAACCTAACTAAATCGGTGGCAGAAGCCTATTACGCATCACGTGAAGCGC
TAGGCTTCCCAATGTGTCGCTCTACTAAACCAACAGCGACAGAGGAGAAGTAA

Upstream 100 bases:

>100_bases
TGAGGTGAATTTACACAAAGTGTCTATTTTCACTACTCCCAAAGAGGTCTGCGAGGTATACTTCTTGGTTATATTTATCA
ACGATCGCGCGAATTAAATT

Downstream 100 bases:

>100_bases
TCATGGCGAAGAATTTTCTAATCGAATTAGGTACAGAAGAGCTTCCACCGAAAGCACTTCGTTCATTAGCTGAAGCGTTT
GCTGCAAATTTTGAAGCCGG

Product: glycyl-tRNA synthetase subunit alpha

Products: NA

Alternate protein names: Glycine--tRNA ligase alpha subunit; GlyRS

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MQKYDIKTFQGMILALQDYWAQQGCTIVQPLDMEVGAGTSHPMTCLRALGPEPMATAYVQPSRRPTDGRYGENPNRLQHY
YQFQVALKPSPDNIQELYLGSLEVLGIDPLVHDIRFVEDNWENPTLGAWGLGWEIWLNGMEVTQFTYFQQVGGLECKPVT
GEITYGIERLAMYIQEVGSVYDLVWNYGPQGVVTYGDIFHQNEVEQSTYNFEHADVDFLFGFFDQCEKECKELLELEKPL
PLPAYERILKAGHAFNLLDARKAISVTERQRYILRIRNLTKSVAEAYYASREALGFPMCRSTKPTATEEK

Sequences:

>Translated_310_residues
MQKYDIKTFQGMILALQDYWAQQGCTIVQPLDMEVGAGTSHPMTCLRALGPEPMATAYVQPSRRPTDGRYGENPNRLQHY
YQFQVALKPSPDNIQELYLGSLEVLGIDPLVHDIRFVEDNWENPTLGAWGLGWEIWLNGMEVTQFTYFQQVGGLECKPVT
GEITYGIERLAMYIQEVGSVYDLVWNYGPQGVVTYGDIFHQNEVEQSTYNFEHADVDFLFGFFDQCEKECKELLELEKPL
PLPAYERILKAGHAFNLLDARKAISVTERQRYILRIRNLTKSVAEAYYASREALGFPMCRSTKPTATEEK
>Mature_310_residues
MQKYDIKTFQGMILALQDYWAQQGCTIVQPLDMEVGAGTSHPMTCLRALGPEPMATAYVQPSRRPTDGRYGENPNRLQHY
YQFQVALKPSPDNIQELYLGSLEVLGIDPLVHDIRFVEDNWENPTLGAWGLGWEIWLNGMEVTQFTYFQQVGGLECKPVT
GEITYGIERLAMYIQEVGSVYDLVWNYGPQGVVTYGDIFHQNEVEQSTYNFEHADVDFLFGFFDQCEKECKELLELEKPL
PLPAYERILKAGHAFNLLDARKAISVTERQRYILRIRNLTKSVAEAYYASREALGFPMCRSTKPTATEEK

Specific function: Unknown

COG id: COG0752

COG function: function code J; Glycyl-tRNA synthetase, alpha subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family

Homologues:

Organism=Escherichia coli, GI1789983, Length=303, Percent_Identity=86.1386138613861, Blast_Score=556, Evalue=1e-160,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SYGA_ALISL (B6EGT2)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002264289.1
- GeneID:   6988286
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I2964
- HOGENOM:   HBG285316
- OMA:   CRRPTDG
- ProtClustDB:   PRK09348
- GO:   GO:0005737
- HAMAP:   MF_00254
- InterPro:   IPR006194
- InterPro:   IPR002310
- PRINTS:   PR01044
- TIGRFAMs:   TIGR00388

Pfam domain/function: PF02091 tRNA-synt_2e

EC number: =6.1.1.14

Molecular weight: Translated: 35479; Mature: 35479

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS50861 AA_TRNA_LIGASE_II_GLYAB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKYDIKTFQGMILALQDYWAQQGCTIVQPLDMEVGAGTSHPMTCLRALGPEPMATAYVQ
CCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCEEEEEC
PSRRPTDGRYGENPNRLQHYYQFQVALKPSPDNIQELYLGSLEVLGIDPLVHDIRFVEDN
CCCCCCCCCCCCCHHHHHHEEEEEEEECCCCCCHHHHHHCCEEEEECCHHHHHHHHHCCC
WENPTLGAWGLGWEIWLNGMEVTQFTYFQQVGGLECKPVTGEITYGIERLAMYIQEVGSV
CCCCCCCCCCCCHHHEECCCHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHH
YDLVWNYGPQGVVTYGDIFHQNEVEQSTYNFEHADVDFLFGFFDQCEKECKELLELEKPL
HHHHHCCCCCCEEEEHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
PLPAYERILKAGHAFNLLDARKAISVTERQRYILRIRNLTKSVAEAYYASREALGFPMCR
CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
STKPTATEEK
CCCCCCCCCC
>Mature Secondary Structure
MQKYDIKTFQGMILALQDYWAQQGCTIVQPLDMEVGAGTSHPMTCLRALGPEPMATAYVQ
CCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCEEEEEC
PSRRPTDGRYGENPNRLQHYYQFQVALKPSPDNIQELYLGSLEVLGIDPLVHDIRFVEDN
CCCCCCCCCCCCCHHHHHHEEEEEEEECCCCCCHHHHHHCCEEEEECCHHHHHHHHHCCC
WENPTLGAWGLGWEIWLNGMEVTQFTYFQQVGGLECKPVTGEITYGIERLAMYIQEVGSV
CCCCCCCCCCCCHHHEECCCHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHH
YDLVWNYGPQGVVTYGDIFHQNEVEQSTYNFEHADVDFLFGFFDQCEKECKELLELEKPL
HHHHHCCCCCCEEEEHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
PLPAYERILKAGHAFNLLDARKAISVTERQRYILRIRNLTKSVAEAYYASREALGFPMCR
CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
STKPTATEEK
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA