Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209696351

Identifier: 209696351

GI number: 209696351

Start: 3200681

End: 3201700

Strand: Reverse

Name: 209696351

Synonym: VSAL_I2955

Alternate gene names: NA

Gene position: 3201700-3200681 (Counterclockwise)

Preceding gene: 209696353

Following gene: 209696350

Centisome position: 96.29

GC content: 43.04

Gene sequence:

>1020_bases
ATGAAGCTTTCACTACTGACTTTCACCGCTCTTCTGTTTTTATCAGGGTGTAGCCAGCAATCAGCAATAGACACATCCAC
AGATGATTTTGGTAACAGTCAATCCGCATCAGGGGCTCATACTTTTATACTGCGTGGTACTGTAGTCATTGGCCACGAAT
CACAAAGTATTCAACCTTGTGGCAGTGACCAACAATATTGGATAAACCTCACTTCAGAGCAATGGAAAGCAGGAACCGAC
ATTCAATCAACACCTTACCAATCAATGTATGGTGAATTAATCGGTCATTTTGAAGCACCACCAAAGGGCGGATTTGCGAA
TGATTACCCTGCACGTTTTGTCGTTTCTCATATCAACAAATTAGTTGCAGGTGAAGGCGCACGCTGCCAACAACCCGCTC
AACCAACAACCGCATCGGGTAATGAACCTTTTTGGAATGTTCAAGTAAATAAAGGGATATTTAGCGTATCGGAAATGGGT
AAAAAGGCCCAACAGCAAGCTATTACGGATCAAGCATTATCCATCGAGCAACGCACCTATCAATCCGATGACATTTCTCT
TGTGATGGACAGTGCTATCTGCAAAGACACCATGGTTGATACTGTTTATGGTTGGGCATCAGACGTCACGATAAATGATA
AAAACTATCAAGGTTGTGCTTCAATCTCACCAAAAGATACCACGCTAAACTGGGTAAACACATACAAAGGAACCAGTACG
GCAGGTAACTCAGGTTTAACCATTGGTCTAACCTTGCGTCCTGATCATTCCGCCGTCACTACGTATGATTATCAAAATGG
CGAATCTCAGTTAGTTGAAACTGGCGTGTGGCAAGCCATTAATGAAAACCAAGTTCACGTATTAATGAGCCGTCACCAAC
GACAATACATGATTGCAGAACGAACCTTTACCCGTAAAGGCAATACCATCAACGCAGAGAAAGAAACGGTGAATGGCGTA
GTCTTTCCCATCCAATCAGGGCTAACCTTATTCTCACCAGTACAACCGTTGGATAAATAA

Upstream 100 bases:

>100_bases
TATTATCAATAGCTCTGATAAAGGTGAATTCCAATCTATTTTAGGTGTCCTATGGCATACTGGTTTTTATTCAACTTATC
ATCGATTTCTGGAGTTTATT

Downstream 100 bases:

>100_bases
TGTCTTGTTCAATTTGTGGATTTACCTATAACTGTATTTGCTCTCATCAGCCAAATTTAATCTCGCACATTGAATTTGCG
CTGCTGTACCATGAGAACGA

Product: lipoprotein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MKLSLLTFTALLFLSGCSQQSAIDTSTDDFGNSQSASGAHTFILRGTVVIGHESQSIQPCGSDQQYWINLTSEQWKAGTD
IQSTPYQSMYGELIGHFEAPPKGGFANDYPARFVVSHINKLVAGEGARCQQPAQPTTASGNEPFWNVQVNKGIFSVSEMG
KKAQQQAITDQALSIEQRTYQSDDISLVMDSAICKDTMVDTVYGWASDVTINDKNYQGCASISPKDTTLNWVNTYKGTST
AGNSGLTIGLTLRPDHSAVTTYDYQNGESQLVETGVWQAINENQVHVLMSRHQRQYMIAERTFTRKGNTINAEKETVNGV
VFPIQSGLTLFSPVQPLDK

Sequences:

>Translated_339_residues
MKLSLLTFTALLFLSGCSQQSAIDTSTDDFGNSQSASGAHTFILRGTVVIGHESQSIQPCGSDQQYWINLTSEQWKAGTD
IQSTPYQSMYGELIGHFEAPPKGGFANDYPARFVVSHINKLVAGEGARCQQPAQPTTASGNEPFWNVQVNKGIFSVSEMG
KKAQQQAITDQALSIEQRTYQSDDISLVMDSAICKDTMVDTVYGWASDVTINDKNYQGCASISPKDTTLNWVNTYKGTST
AGNSGLTIGLTLRPDHSAVTTYDYQNGESQLVETGVWQAINENQVHVLMSRHQRQYMIAERTFTRKGNTINAEKETVNGV
VFPIQSGLTLFSPVQPLDK
>Mature_339_residues
MKLSLLTFTALLFLSGCSQQSAIDTSTDDFGNSQSASGAHTFILRGTVVIGHESQSIQPCGSDQQYWINLTSEQWKAGTD
IQSTPYQSMYGELIGHFEAPPKGGFANDYPARFVVSHINKLVAGEGARCQQPAQPTTASGNEPFWNVQVNKGIFSVSEMG
KKAQQQAITDQALSIEQRTYQSDDISLVMDSAICKDTMVDTVYGWASDVTINDKNYQGCASISPKDTTLNWVNTYKGTST
AGNSGLTIGLTLRPDHSAVTTYDYQNGESQLVETGVWQAINENQVHVLMSRHQRQYMIAERTFTRKGNTINAEKETVNGV
VFPIQSGLTLFSPVQPLDK

Specific function: Unknown

COG id: COG3650

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37119; Mature: 37119

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSLLTFTALLFLSGCSQQSAIDTSTDDFGNSQSASGAHTFILRGTVVIGHESQSIQPC
CEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCC
GSDQQYWINLTSEQWKAGTDIQSTPYQSMYGELIGHFEAPPKGGFANDYPARFVVSHINK
CCCCEEEEEECHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
LVAGEGARCQQPAQPTTASGNEPFWNVQVNKGIFSVSEMGKKAQQQAITDQALSIEQRTY
HHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHC
QSDDISLVMDSAICKDTMVDTVYGWASDVTINDKNYQGCASISPKDTTLNWVNTYKGTST
CCCCCEEEEHHHHHHHHHHHHHHCCEECEEECCCCCCCCCCCCCCCCEEEEEEECCCCCC
AGNSGLTIGLTLRPDHSAVTTYDYQNGESQLVETGVWQAINENQVHVLMSRHQRQYMIAE
CCCCCEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEHHHCHHEEHHH
RTFTRKGNTINAEKETVNGVVFPIQSGLTLFSPVQPLDK
HHCCCCCCEECCCHHHCCEEEEEECCCCEEECCCCCCCC
>Mature Secondary Structure
MKLSLLTFTALLFLSGCSQQSAIDTSTDDFGNSQSASGAHTFILRGTVVIGHESQSIQPC
CEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCC
GSDQQYWINLTSEQWKAGTDIQSTPYQSMYGELIGHFEAPPKGGFANDYPARFVVSHINK
CCCCEEEEEECHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
LVAGEGARCQQPAQPTTASGNEPFWNVQVNKGIFSVSEMGKKAQQQAITDQALSIEQRTY
HHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHC
QSDDISLVMDSAICKDTMVDTVYGWASDVTINDKNYQGCASISPKDTTLNWVNTYKGTST
CCCCCEEEEHHHHHHHHHHHHHHCCEECEEECCCCCCCCCCCCCCCCEEEEEEECCCCCC
AGNSGLTIGLTLRPDHSAVTTYDYQNGESQLVETGVWQAINENQVHVLMSRHQRQYMIAE
CCCCCEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEHHHCHHEEHHH
RTFTRKGNTINAEKETVNGVVFPIQSGLTLFSPVQPLDK
HHCCCCCCEECCCHHHCCEEEEEECCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA